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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946934
Clone id YMU02A01NGRL0014_D19
Library
Length 313
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_D19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTG
GTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAG
ATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATAA
ATAAATCCAGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTT
CGACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTTCTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9M158
Definition sp|Q9M158|Y4105_ARATH Uncharacterized protein At4g01050 OS=Arabidopsis thaliana
Align length 46
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946934|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_D19, 5'
         (282 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M158|Y4105_ARATH Uncharacterized protein At4g01050 OS=Arabi...    29   6.4  

>sp|Q9M158|Y4105_ARATH Uncharacterized protein At4g01050
           OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2
          Length = 466

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 254 SPSCRNEGSRSTK*MFNNLDKPGFIYSNFLSQIYSLRFSDDESAIL 117
           SP+ +  G ++   ++N  DKPGF+      +  SL+F D E+  L
Sbjct: 164 SPNIKGLGKKAVSTVYNGEDKPGFL------KKLSLKFKDPENTTL 203
tr_hit_id Q54CB7
Definition tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 55
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946934|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_D19, 5'
         (282 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty...    33   7.2  

>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
          Length = 955

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 54  ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSRFVKIIEHLF 218
           I+G ++ SGE+N E   ++   DS   +T    IN+GK   IN S  +  I   F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796