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NBDC - LSDB Archive
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DK946951
Clone id YMU02A01NGRL0014_E16
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_E16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCAT
CTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTC
AAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCT
CGCCATCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAA
GAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGT
GGACTTCATGGTCCGAAGAGGCTGGACCCCTTGCATTGAGTTCGACGAAATCGGGAGCGT
GTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAA
GCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGC
CAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCA
GGTCTCCGGCTT
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 147
Score (bit) 180.0
E-value 5.0e-45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946951|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_E16, 5'
         (552 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   180   5e-45
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   177   2e-44
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   175   1e-43
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   174   2e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   174   3e-43
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   174   3e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   173   4e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   173   4e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   173   4e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   173   4e-43
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   173   6e-43
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   172   7e-43
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   172   1e-42
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   171   2e-42
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   171   2e-42
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   170   4e-42
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   170   4e-42
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   170   5e-42
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   170   5e-42
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   170   5e-42
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   170   5e-42
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   170   5e-42
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   169   6e-42
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   169   6e-42

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  180 bits (456), Expect = 5e-45
 Identities = 85/147 (57%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 283
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 284 QIAKQVDFMVRRGWTPCIEFD-EIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
            ++K++D+++R  W PC+EF+ E G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 461 REIAECAKEYPEAFIRVLGFDAKRQVQ 541
           +E+ EC KEYP AFIRV+GFD  RQVQ
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQ 168


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  177 bits (450), Expect = 2e-44
 Identities = 86/144 (59%), Positives = 106/144 (73%), Gaps = 5/144 (3%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 296 QVDFMVRRGWTPCIEFD-EIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++R+   PC+EF+ E G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQV 544
           EC K YP AFIR++GFD KRQVQ+
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQI 171


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  175 bits (444), Expect = 1e-43
 Identities = 82/143 (57%), Positives = 104/143 (72%), Gaps = 5/143 (3%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 296 QVDFMVRRGWTPCIEFD-EIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++R  W PC+EF+ E G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQ 541
           EC KEYP AFIR++GFD  RQVQ
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQ 166


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  174 bits (442), Expect = 2e-43
 Identities = 83/146 (56%), Positives = 108/146 (73%), Gaps = 4/146 (2%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 286
           L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 287 IAKQVDFMVRRGWTPCIEFD-EIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 463
           + K+V++++R+GW PC+EF+ E G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 464 EIAECAKEYPEAFIRVLGFDAKRQVQ 541
           E+AEC  EYPEAFIR++GFD  RQVQ
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQ 166


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  174 bits (441), Expect = 3e-43
 Identities = 82/142 (57%), Positives = 104/142 (73%), Gaps = 4/142 (2%)
 Frame = +2

Query: 128 FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 298
           F+GLK+   F   K  N  +   SNG RV  M VW P   KK+ETLSYLPPL+  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 299 VDFMVRRGWTPCIEFD-EIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++R+ W PC+EF+ E G VYRE+    GYYDGRYW MWKLPMFGC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 476 CAKEYPEAFIRVLGFDAKRQVQ 541
           C KEYP+A+IR++GFD  RQVQ
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQVQ 166


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  174 bits (441), Expect = 3e-43
 Identities = 83/142 (58%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRRGWTPCIEFDEIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           +VD+++R  W PCIEF + G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFDAKRQVQ 541
             K YPE F+R++GFD KRQVQ
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQ 167


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  174 bits (441), Expect = 3e-43
 Identities = 83/142 (58%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
 Frame = +2

Query: 128 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 296 QVDFMVRRGWTPCIEFDEIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           +VD+++R  W PCIEF + G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 476 CAKEYPEAFIRVLGFDAKRQVQ 541
             K YPE F+R++GFD KRQVQ
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQ 167


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  174 bits (441), Expect = 3e-43
 Identities = 84/143 (58%), Positives = 104/143 (72%), Gaps = 5/143 (3%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           F+GLK++  F    K+ N +    SNG RVS M VW P   KKFETLSYLP LS  ++AK
Sbjct: 24  FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAK 83

Query: 296 QVDFMVRRGWTPCIEFD-EIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           +VD+++R  W PC+EF+ E G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQ 541
           EC KEYP AFIR++GFD  RQVQ
Sbjct: 144 ECKKEYPGAFIRIIGFDNTRQVQ 166


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  173 bits (439), Expect = 4e-43
 Identities = 79/139 (56%), Positives = 99/139 (71%)
 Frame = +2

Query: 125 SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 304
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 305 FMVRRGWTPCIEFDEIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 484
           +++R GW PCIEF ++G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 485 EYPEAFIRVLGFDAKRQVQ 541
            YP+ F R++GFD  RQVQ
Sbjct: 148 AYPDYFNRIIGFDNTRQVQ 166


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  173 bits (439), Expect = 4e-43
 Identities = 83/142 (58%), Positives = 106/142 (74%), Gaps = 4/142 (2%)
 Frame = +2

Query: 128 FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 298
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 299 VDFMVRRGWTPCIEFD-EIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           VD+++R+ W PC+EF+ E G VYRE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 476 CAKEYPEAFIRVLGFDAKRQVQ 541
             K YP++FIR++GFD  RQVQ
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQ 171
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 145
Score (bit) 276.0
E-value 7.0e-73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946951|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_E16, 5'
         (552 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   276   7e-73
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   195   2e-48
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   192   1e-47
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   191   2e-47
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   188   2e-46
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   181   2e-44
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   181   2e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   180   5e-44
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   178   1e-43
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   177   4e-43
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   176   6e-43
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   176   6e-43
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   176   6e-43
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   175   1e-42
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   174   4e-42
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   174   4e-42
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   173   5e-42
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...   173   5e-42
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   173   5e-42
tr|A5PJI4|A5PJI4_BOVIN Putative uncharacterized protein OS=Bos t...   173   5e-42

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  276 bits (705), Expect = 7e-73
 Identities = 127/145 (87%), Positives = 138/145 (95%)
 Frame = +2

Query: 116 LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 295
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 296 QVDFMVRRGWTPCIEFDEIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 475
           QV++MVR+GWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 476 CAKEYPEAFIRVLGFDAKRQVQVSG 550
           CAKEYP AFIRVLGFDAKRQVQV+G
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAG 166


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  195 bits (495), Expect = 2e-48
 Identities = 91/146 (62%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRRGWTPCIEFDEIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSG 550
           EC + +P  ++RVLGFD+K+QVQ+ G
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICG 172


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  192 bits (487), Expect = 1e-47
 Identities = 90/146 (61%), Positives = 109/146 (74%), Gaps = 3/146 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 302 DFMVRRGWTPCIEFDEIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSG 550
           EC + +P  ++RVLGFD+K+QVQ+ G
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICG 172


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  191 bits (485), Expect = 2e-47
 Identities = 88/146 (60%), Positives = 108/146 (73%), Gaps = 3/146 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 302 DFMVRRGWTPCIEFDEIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSG 550
           EC   YP  ++RVLGFD+K+QVQ+ G
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICG 177


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  191 bits (484), Expect = 3e-47
 Identities = 87/146 (59%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 302 DFMVRRGWTPCIEFDEIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSG 550
           EC  ++P  ++RVLGFD+K+QVQ+ G
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICG 207


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  191 bits (484), Expect = 3e-47
 Identities = 88/146 (60%), Positives = 109/146 (74%), Gaps = 3/146 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 302 DFMVRRGWTPCIEFDEIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSG 550
           EC  ++P  ++RVLGFD+K+QVQ+ G
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICG 177


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  188 bits (477), Expect = 2e-46
 Identities = 85/146 (58%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 302 DFMVRRGWTPCIEFDEIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 472
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 473 ECAKEYPEAFIRVLGFDAKRQVQVSG 550
           EC  ++P  ++RVLGFD+K+QVQ+ G
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICG 176


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  182 bits (461), Expect = 1e-44
 Identities = 85/147 (57%), Positives = 106/147 (72%), Gaps = 5/147 (3%)
 Frame = +2

Query: 116 LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 283
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 284 QIAKQVDFMVRRGWTPCIEFD-EIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 460
            ++K++D+++R  W PC+EF+ E G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 461 REIAECAKEYPEAFIRVLGFDAKRQVQ 541
           +E+ EC KEYP AFIRV+GFD+ RQVQ
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDSVRQVQ 168


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  182 bits (461), Expect = 1e-44
 Identities = 83/143 (58%), Positives = 103/143 (72%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRRGWTPCIEFDEIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAKRQVQVSG 550
           K +P  F+RVLGFD  +QVQ+ G
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICG 174


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  181 bits (460), Expect = 2e-44
 Identities = 84/143 (58%), Positives = 103/143 (72%)
 Frame = +2

Query: 122 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 301
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 302 DFMVRRGWTPCIEFDEIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 481
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 482 KEYPEAFIRVLGFDAKRQVQVSG 550
           K +P  F+RVLGFD  +QVQ+ G
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICG 174