DK946954 [AcEST]

DK946954
Clone id	YMU02A01NGRL0014_E19
Library	YMU02
Length	499
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_E19. 5' end sequence.
Accession	DK946954
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCGTAGCGGGTATAGTTTAGTGGTAAAAATGTGACTCGTCTCGCAGTGATTTTGATAG TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAAAACTTTATCTTCGCAGAAA ATATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCA TTCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAA TACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAAATCTATGGGTAGAC GTCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTT GGAATAAATAAATCCGGGTTCGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCC CTCGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCCGAAAAAAAAAAA AAAAAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	P16237
Definition	sp\|P16237\|HMDH_SCHMA 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Schistosoma mansoni
Align length	42
Score (bit)	29.3
E-value	8.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946954\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0014_E19, 5' (469 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|P16237\|HMDH_SCHMA 3-hydroxy-3-methylglutaryl-coenzyme A reduc... 29 8.9 >sp\|P16237\|HMDH_SCHMA 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Schistosoma mansoni PE=2 SV=1 Length = 948 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 5/42 (11%) Frame = -3 Query: 122 IFCEDKVFFLSVN--LAEIRSLNYQN---HCETSHIFTTKLY 12 +F + VFF+ + L EI +NY++ HC SH+F+ +L+ Sbjct: 129 LFSDLSVFFIVLEYYLLEIELVNYEHAKRHCLLSHLFSNQLF 170
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A2FK37
Definition	tr\|A2FK37\|A2FK37_TRIVA Sodium:sulfate symporter transmembrane region family protein OS=Trichomonas vaginalis G3
Align length	47
Score (bit)	33.5
E-value	5.5
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946954\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0014_E19, 5' (469 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A2FK37\|A2FK37_TRIVA Sodium:sulfate symporter transmembrane re... 33 5.5 >tr\|A2FK37\|A2FK37_TRIVA Sodium:sulfate symporter transmembrane region family protein OS=Trichomonas vaginalis G3 GN=TVAG_355950 PE=4 SV=1 Length = 705 Score = 33.5 bits (75), Expect = 5.5 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = -3 Query: 137 NKKTHIFCEDKVFFLSVNLAEIRSLNYQNHCETSHI---FTTKL-YP 9 +++T I K+F ++NL EIRS NH TSHI F KL YP Sbjct: 104 DEETAIAIHKKIFITTLNLYEIRSFLEVNHSATSHIIKKFVKKLVYP 150