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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946955
Clone id YMU02A01NGRL0014_E20
Library
Length 491
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_E20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTATGAAGATCCATCTGCAGCACATTCTGCTGGAGGGTTCTTTAATGATCATGTCTTGAG
GGGTCATCAGATAAAGGTTATCATGGCAGAGAAGTCAGCTCCAAGGCCAGCTGCGGCGGG
GGGCTATGGTCAAGGACATGGAGGTGGCCATGGTGGGCCTGATCGACGCTTCGGCGGTGG
GCATCGTTCCCGACCCTATTAACTTGTCTGGTTCTGGTGGCTGGAGTCAACAAAGCTTTG
CAAGTGGACTTTCATCTTTTGTAGTTCTAACAGTCCTCATCCGACAGTACATGGCACTTG
CTGTTTGTGCTCAGGCTGTAACTTTTTTGAGTCCAGCTACGGCTAGGTGTCTTCTGTAGG
ATCTGGCCCTGATAACTAGGTTGCTATTTTGATCTTACTGGTCGAAATTGTTAAGTGGTT
TGTTTGCAGCAGCAATCTGAGAGTGCGATGGATTCGAGGCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6C449
Definition sp|Q6C449|IRS4_YARLI Increased rDNA silencing protein 4 OS=Yarrowia lipolytica
Align length 69
Score (bit) 32.0
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946955|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_E20, 5'
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6C449|IRS4_YARLI Increased rDNA silencing protein 4 OS=Yarro...    32   1.3  
sp|O95248|MTMR5_HUMAN Myotubularin-related protein 5 OS=Homo sap...    30   3.8  
sp|Q4WK35|AMDR_ASPFU Acetamidase regulatory protein OS=Aspergill...    30   6.5  
sp|Q09908|PHF2_SCHPO SWM histone demethylase complex subunit phf...    29   8.5  

>sp|Q6C449|IRS4_YARLI Increased rDNA silencing protein 4 OS=Yarrowia
           lipolytica GN=IRS4 PE=3 SV=1
          Length = 1005

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -1

Query: 365 QILQKTPSRSWTQKSYSLSTNSKCHVLSDEDC*NYKR*KSTCKALLTPATRTRQVNRVG- 189
           QI++  PS S + +S  LS +S   VLSDED  N++R   + ++  T  T       +G 
Sbjct: 197 QIIRDLPSPSNSVRSKRLSQSSLVPVLSDEDIYNHRRYARSSQSFATIPTDEDSPGEMGD 256

Query: 188 ----NDAHR 174
               N  HR
Sbjct: 257 FEDNNQVHR 265


>sp|O95248|MTMR5_HUMAN Myotubularin-related protein 5 OS=Homo
           sapiens GN=SBF1 PE=1 SV=3
          Length = 1867

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 15/105 (14%)
 Frame = -1

Query: 371 QGQILQKTPSRSWTQKSYSLSTNSKCHVLSDEDC---------------*NYKR*KSTCK 237
           QGQILQ+ P + W    +       C     + C                N +R    C 
Sbjct: 24  QGQILQRFPEKDWEDNPFPQGIELFCQPSGWQLCPERNPPTFFVAVLTDINSERHYCACL 83

Query: 236 ALLTPATRTRQVNRVGNDAHRRSVDQAHHGHLHVLDHSPPPQLAL 102
               PA  +++  RV  DA  R  +    G  H+   +P P   L
Sbjct: 84  TFWEPAEPSQETTRV-EDATEREEEGDEGGQTHLSPTAPAPSAQL 127


>sp|Q4WK35|AMDR_ASPFU Acetamidase regulatory protein OS=Aspergillus
           fumigatus GN=amdR PE=3 SV=1
          Length = 772

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -2

Query: 226 LQPPEPDKLIGSGTMPTAEASIRPTMATSMSLTIAPRRSWPWS*LLCHDNLYLMTPQD 53
           +QPP+PD+L+ S   PT +++  P  A      ++P ++  +   +   NL  + P D
Sbjct: 663 VQPPQPDRLLPSYDSPTPDSTSLPQTA------VSPHQNLTFDSWIPSTNLATVDPMD 714


>sp|Q09908|PHF2_SCHPO SWM histone demethylase complex subunit phf2
           OS=Schizosaccharomyces pombe GN=phf2 PE=2 SV=1
          Length = 538

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 208 DKLIGSGTMPTAEASIRPTMATSMSLTIAPRRSWPWS*LLCHDN 77
           D    S   P   AS  P    S+++ IA +RSWP S  +  DN
Sbjct: 132 DSQTKSALPPNVPASSSPLPPMSIAMNIARKRSWPASLAIERDN 175
tr_hit_id A9U3C2
Definition tr|A9U3C2|A9U3C2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 36
Score (bit) 64.3
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946955|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_E20, 5'
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U3C2|A9U3C2_PHYPA Predicted protein OS=Physcomitrella paten...    64   3e-09
tr|A9T0V1|A9T0V1_PHYPA Predicted protein OS=Physcomitrella paten...    64   3e-09
tr|Q94KD0|Q94KD0_ARATH AT5g58470/mqj2_60 OS=Arabidopsis thaliana...    60   4e-08
tr|Q6S7B1|Q6S7B1_ARATH TAF15b (Fragment) OS=Arabidopsis thaliana...    60   4e-08
tr|Q0JQG3|Q0JQG3_ORYSJ Os01g0164400 protein (Fragment) OS=Oryza ...    60   4e-08
tr|B8ADF0|B8ADF0_ORYSI Putative uncharacterized protein OS=Oryza...    60   4e-08
tr|A2ZPL7|A2ZPL7_ORYSJ Putative uncharacterized protein OS=Oryza...    60   4e-08
tr|A7Q315|A7Q315_VITVI Chromosome chr12 scaffold_47, whole genom...    60   5e-08
tr|Q9FGH5|Q9FGH5_ARATH Genomic DNA, chromosome 5, P1 clone:MQJ2 ...    37   0.64 
tr|Q7WZE6|Q7WZE6_SHEVI Putative uncharacterized protein OS=Shewa...    35   1.9  
tr|A9V5F1|A9V5F1_MONBE Predicted protein OS=Monosiga brevicollis...    34   4.1  
tr|A8RYN9|A8RYN9_9CLOT Putative uncharacterized protein OS=Clost...    33   5.4  
tr|A8HPQ3|A8HPQ3_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   5.4  
tr|B4PF75|B4PF75_DROYA GE21827 OS=Drosophila yakuba GN=GE21827 P...    33   5.4  
tr|B4MR15|B4MR15_DROWI GK21343 OS=Drosophila willistoni GN=GK213...    33   5.4  
tr|B4WP33|B4WP33_9SYNE Cytochrome C assembly protein OS=Synechoc...    33   7.0  
tr|A1SNP1|A1SNP1_NOCSJ Xanthine/uracil/vitamin C permease OS=Noc...    33   9.2  
tr|B5I683|B5I683_9ACTO Putative uncharacterized protein OS=Strep...    33   9.2  

>tr|A9U3C2|A9U3C2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173455 PE=4 SV=1
          Length = 481

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFNDHVLRGHQIKVIMAEKSAPRP 109
           YEDP AAHSAGGFFND+ +RGH+IKV MA KSAP+P
Sbjct: 273 YEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSAPKP 308


>tr|A9T0V1|A9T0V1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_231987 PE=4 SV=1
          Length = 336

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFNDHVLRGHQIKVIMAEKSAPRP 109
           YEDP AAHSAGGFFND+ +RGH+IKV MA KSAP+P
Sbjct: 270 YEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSAPKP 305


>tr|Q94KD0|Q94KD0_ARATH AT5g58470/mqj2_60 OS=Arabidopsis thaliana
           GN=At5g58470 PE=2 SV=1
          Length = 422

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/35 (77%), Positives = 32/35 (91%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFNDHVLRGHQIKVIMAEKSAPR 106
           YEDPSAAHSAGGFFN++ +RG++I V MAEKSAPR
Sbjct: 341 YEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPR 375


>tr|Q6S7B1|Q6S7B1_ARATH TAF15b (Fragment) OS=Arabidopsis thaliana
           GN=TAF15b PE=2 SV=1
          Length = 387

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/35 (77%), Positives = 32/35 (91%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFNDHVLRGHQIKVIMAEKSAPR 106
           YEDPSAAHSAGGFFN++ +RG++I V MAEKSAPR
Sbjct: 341 YEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPR 375


>tr|Q0JQG3|Q0JQG3_ORYSJ Os01g0164400 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0164400 PE=4 SV=1
          Length = 283

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFNDHVLRGHQIKVIMAEKSAPRPAA 115
           YEDPSAAHSAGGF+N++ +RG++I V MAEKSAPR  A
Sbjct: 207 YEDPSAAHSAGGFYNNYEMRGYKISVAMAEKSAPRAPA 244


>tr|B8ADF0|B8ADF0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00526 PE=4 SV=1
          Length = 440

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFNDHVLRGHQIKVIMAEKSAPRPAA 115
           YEDPSAAHSAGGF+N++ +RG++I V MAEKSAPR  A
Sbjct: 364 YEDPSAAHSAGGFYNNYEMRGYKISVAMAEKSAPRAPA 401


>tr|A2ZPL7|A2ZPL7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000489 PE=4 SV=1
          Length = 578

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFNDHVLRGHQIKVIMAEKSAPRPAA 115
           YEDPSAAHSAGGF+N++ +RG++I V MAEKSAPR  A
Sbjct: 502 YEDPSAAHSAGGFYNNYEMRGYKISVAMAEKSAPRAPA 539


>tr|A7Q315|A7Q315_VITVI Chromosome chr12 scaffold_47, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029111001
           PE=4 SV=1
          Length = 341

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFNDHVLRGHQIKVIMAEKSAPRPAAA 118
           YEDPSAAHSAGGF+N++ +RG++I V MAEKSAPR   A
Sbjct: 261 YEDPSAAHSAGGFYNNYEMRGYKINVAMAEKSAPRAPPA 299


>tr|Q9FGH5|Q9FGH5_ARATH Genomic DNA, chromosome 5, P1 clone:MQJ2
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 363

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 2   YEDPSAAHSAGGFFN 46
           YEDPSAAHSAGGFFN
Sbjct: 341 YEDPSAAHSAGGFFN 355


>tr|Q7WZE6|Q7WZE6_SHEVI Putative uncharacterized protein
           OS=Shewanella violacea PE=4 SV=1
          Length = 360

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +1

Query: 58  EGSSDKGYHGREVSSKASCGGGLWSRTWRWPWWA*STLRRWASFPTLLTCLVLVAGVNKA 237
           EG  ++ +H R+ SS +   G +  R  +W +WA    +   +  T L  LVL+AG+ + 
Sbjct: 163 EGVVEEKHHKRQTSSSSRLSGSMAMR--QWSYWAKENRKLLLAVATGLGVLVLIAGLLEL 220

Query: 238 LQVD 249
           L  D
Sbjct: 221 LSTD 224