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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946963
Clone id YMU02A01NGRL0014_F05
Library
Length 267
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_F05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATCGTCTGCTGCAGACGATCCAGCGATGGCGTTTCGCAAGTTTCTGAGCCTGTTCATGG
CGGGCGCGGTATGGTGCGTTGCATACAGCACAATTGCGGTGCTCCGAGGCGCCCTCCAGG
TTGTTCTTTTGAGGGTCCCAACCTGATAATCCCTGCAGTTTACTGCTAATCTCCATGTAA
TGCTTACTTTGGGTGTTGTATCTAAGCCATTAATGCTATCTATGTGAATTTCTGGGCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8R4S7
Definition sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli
Align length 49
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946963|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_F05, 5'
         (237 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli GN=A...    31   2.2  
sp|Q6FX62|PBN1_CANGA Protein PBN1 OS=Candida glabrata GN=PBN1 PE...    30   2.9  
sp|Q8R4S2|AHR_MUSSP Aryl hydrocarbon receptor OS=Mus spretus GN=...    30   2.9  
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE...    30   4.9  
sp|Q8R4S4|AHR_MUSSI Aryl hydrocarbon receptor OS=Mus spicilegus ...    30   4.9  
sp|Q8R4S5|AHR_MUSMM Aryl hydrocarbon receptor OS=Mus musculus mo...    30   4.9  
sp|Q8R4S6|AHR_MUSMC Aryl hydrocarbon receptor OS=Mus musculus ca...    30   4.9  
sp|P30561|AHR_MOUSE Aryl hydrocarbon receptor OS=Mus musculus GN...    30   4.9  
sp|Q9NYA4|MTMR4_HUMAN Myotubularin-related protein 4 OS=Homo sap...    29   6.4  

>sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli GN=Ahr
           PE=2 SV=1
          Length = 854

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 185 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHEQAQKL 39
           KHY  + S LQG +   P K  ++G    +N A CN P    H ++ +L
Sbjct: 678 KHY-HLFSSLQGTAQEFPYKPEVDGMPYTQNFAPCNQPLLPEHSKSVQL 725


>sp|Q6FX62|PBN1_CANGA Protein PBN1 OS=Candida glabrata GN=PBN1 PE=3
           SV=1
          Length = 416

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -3

Query: 211 NGLDTTPKVSIT----WRLAVNCRDYQVGTLKRTTWRAPRSTAIVLYATHHTAPAMNRLR 44
           +G+   P  +IT    W  A+   DY++ +++R +WR P ST          AP  N   
Sbjct: 26  DGVIVFPNSNITIQDRWTYAI---DYELDSIRRISWRNPSSTRQFSVIESRLAPGFNIYS 82

Query: 43  NLRNA 29
           N + A
Sbjct: 83  NDKEA 87


>sp|Q8R4S2|AHR_MUSSP Aryl hydrocarbon receptor OS=Mus spretus GN=Ahr
           PE=2 SV=1
          Length = 854

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 185 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHEQAQKL 39
           KHY +I S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 678 KHY-QIFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 725


>sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1
           SV=2
          Length = 769

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = +2

Query: 11  CRRSSDGVSQVSEPVHGGRGMVRCIQHNCGAPRRPPGCSFEGPNLIIPAVYC*SPCNAYF 190
           C R+++G          GRG  RC    C +  + P C  E P        C SPC  Y 
Sbjct: 575 CERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQ-ECPG-------CPSPCGKYI 626

Query: 191 GC 196
            C
Sbjct: 627 SC 628


>sp|Q8R4S4|AHR_MUSSI Aryl hydrocarbon receptor OS=Mus spicilegus
           GN=Ahr PE=2 SV=1
          Length = 854

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 185 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHEQAQKL 39
           KHY ++ S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 678 KHY-QLFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 725


>sp|Q8R4S5|AHR_MUSMM Aryl hydrocarbon receptor OS=Mus musculus
           molossinus GN=Ahr PE=2 SV=1
          Length = 883

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 185 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHEQAQKL 39
           KHY ++ S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 672 KHY-QLFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 719


>sp|Q8R4S6|AHR_MUSMC Aryl hydrocarbon receptor OS=Mus musculus
           castaneus GN=Ahr PE=2 SV=1
          Length = 848

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 185 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHEQAQKL 39
           KHY ++ S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 672 KHY-QLFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 719


>sp|P30561|AHR_MOUSE Aryl hydrocarbon receptor OS=Mus musculus
           GN=Ahr PE=1 SV=3
          Length = 848

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 185 KHYMEISSKLQGLSGWDPQKNNLEGASEHRNCAVCNAPYRARHEQAQKL 39
           KHY ++ S LQG +   P K  ++     +N A CN P    H ++ +L
Sbjct: 672 KHY-QLFSSLQGTAQEFPYKPEVDSVPYTQNFAPCNQPLLPEHSKSVQL 719


>sp|Q9NYA4|MTMR4_HUMAN Myotubularin-related protein 4 OS=Homo
           sapiens GN=MTMR4 PE=2 SV=1
          Length = 1195

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -1

Query: 135 PSKEQPGGRLGAPQLCCMQR---TIPRPP*TGSETCETPSLDRLQQ 7
           P + QP   LG P  C +     T+  PP    +T   PS D L Q
Sbjct: 790 PQQAQPDSMLGVPSKCVLDHSLSTVCNPPSAACQTPLDPSTDFLNQ 835
tr_hit_id Q8VHL6
Definition tr|Q8VHL6|Q8VHL6_SIGHI Integrin beta OS=Sigmodon hispidus
Align length 62
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946963|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_F05, 5'
         (237 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8VHL6|Q8VHL6_SIGHI Integrin beta OS=Sigmodon hispidus PE=2 SV=1    37   0.49 

>tr|Q8VHL6|Q8VHL6_SIGHI Integrin beta OS=Sigmodon hispidus PE=2 SV=1
          Length = 769

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +2

Query: 11  CRRSSDGVSQVSEPVHGGRGMVRCIQHNCGAPRRPPGCSFEGPNLIIPAVYC*SPCNAYF 190
           C+RS+DG          GRG   C Q  C    +PP C           + C SPC+ Y 
Sbjct: 575 CKRSTDGCLNTRLVECSGRGRCHCNQCKCEDGYQPPLCE--------ECIGCPSPCSEYI 626

Query: 191 GC 196
            C
Sbjct: 627 SC 628