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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946966
Clone id YMU02A01NGRL0014_F08
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_F08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCATGCCTTGTGCTAAATATCAAAGAAATCTCCAGTCCCAGAATGTAGTCTCGTCCTCTC
GATTCACCCACAGCCACATCATTAAGGCTGCACAGACGCAGTCCGCTCCTCGCGCACGCG
AAACGGAGAACGTATCGCTCAAGGGTGATGCAGAGGATGCTGCCTTGAAGGTATTTGCTG
ATGATACAAAAGGAATTGTATGCTATCGAACAGAGTCTGGTGAAATCGTTTGTGAGGGCA
TGGATGAGGGCCCTCAGTTCTATCCTCCTTCTGGGGCGAACTTCTACATGCCCGATACTC
GAGCTGCTGCTATCCTTCCTCTGCTAGGAGAGGTTATGTATGAAATCTAAGATTACAAAG
GCGTCGTGGGCTTTTCTTGTTCTTCAAGATAAGCATAAGCTTTTGCGAACTTGATGATGT
GGGGAGTAGTTGTAATCCAGAGTAAGCAAAGGTTAATTCACTTATAGAGAGATTATTATC
TTAAGTGTGGTTGGAACTTGACCTGTATATTAATCTGTACCCTAGTTATGTTCGGTTCAT
CTGAG
■■Homology search results ■■ -
sp_hit_id Q9ER58
Definition sp|Q9ER58|TICN2_MOUSE Testican-2 OS=Mus musculus
Align length 35
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946966|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_F08, 5'
         (545 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ER58|TICN2_MOUSE Testican-2 OS=Mus musculus GN=Spock2 PE=2 ...    32   1.5  
sp|B1XLW1|Y2658_SYNP2 PKHD-type hydroxylase SYNPCC7002_A2658 OS=...    31   3.4  
sp|Q92563|TICN2_HUMAN Testican-2 OS=Homo sapiens GN=SPOCK2 PE=1 ...    31   3.4  
sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein OS...    30   7.6  
sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein ...    30   7.6  
sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein ...    30   7.6  
sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens GN...    30   7.6  
sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protei...    30   9.9  
sp|P08863|NO26B_SOYBN Nodulin-26B OS=Glycine max PE=2 SV=2             30   9.9  

>sp|Q9ER58|TICN2_MOUSE Testican-2 OS=Mus musculus GN=Spock2 PE=2
           SV=1
          Length = 423

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 306 QLEYRACRSSPQKEDRTEGPHPCPHKRFHQTLFDS 202
           +LE +AC SS Q   R EGP PCP ++   +  DS
Sbjct: 160 KLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDS 194


>sp|B1XLW1|Y2658_SYNP2 PKHD-type hydroxylase SYNPCC7002_A2658
           OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
           PR-6) GN=SYNPCC7002_A2658 PE=3 SV=1
          Length = 219

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 117 RETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMPD 296
           R T+N  + G   D +  +F ++         E GE+V EG D    +  P+G     P 
Sbjct: 95  RHTDNALMNGMRSDVSFTLFLNEPSDY-----EGGELVIEGADSEQSYKLPAGTAIAYPS 149

Query: 297 T 299
           T
Sbjct: 150 T 150


>sp|Q92563|TICN2_HUMAN Testican-2 OS=Homo sapiens GN=SPOCK2 PE=1
           SV=1
          Length = 424

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 306 QLEYRACRSSPQKEDRTEGPHPCP 235
           +LE +AC SS Q   R EGP PCP
Sbjct: 160 KLEQQACLSSKQLAVRCEGPCPCP 183


>sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein
            OS=Rattus norvegicus GN=Nalcn PE=2 SV=1
          Length = 1738

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 85   RLHRRSPLLAH--AKRRTYRSRVMQRMLP*RYLLMIQKELYAIEQSLVKSFVRAWMRALS 258
            RLH    +  H      +YRS  +++ L    LL  ++  Y IE+ + K  +R W++   
Sbjct: 1521 RLHNGGDVTFHDVLSMLSYRSVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCL 1580

Query: 259  SILLLGRTSTCPILELL 309
              +   +  +C I+  L
Sbjct: 1581 KRIRAKQQQSCSIIHSL 1597


>sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein
            OS=Mus musculus GN=Nalcn PE=2 SV=2
          Length = 1738

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 85   RLHRRSPLLAH--AKRRTYRSRVMQRMLP*RYLLMIQKELYAIEQSLVKSFVRAWMRALS 258
            RLH    +  H      +YRS  +++ L    LL  ++  Y IE+ + K  +R W++   
Sbjct: 1521 RLHNGGDVTFHDVLSMLSYRSVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCL 1580

Query: 259  SILLLGRTSTCPILELL 309
              +   +  +C I+  L
Sbjct: 1581 KRIRAKQQQSCSIIHSL 1597


>sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein
            OS=Homo sapiens GN=NALCN PE=1 SV=1
          Length = 1738

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 85   RLHRRSPLLAH--AKRRTYRSRVMQRMLP*RYLLMIQKELYAIEQSLVKSFVRAWMRALS 258
            RLH    +  H      +YRS  +++ L    LL  ++  Y IE+ + K  +R W++   
Sbjct: 1521 RLHNGGDVTFHDVLSMLSYRSVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCL 1580

Query: 259  SILLLGRTSTCPILELL 309
              +   +  +C I+  L
Sbjct: 1581 KRIRAKQQQSCSIIHSL 1597


>sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens
           GN=FOXJ3 PE=1 SV=1
          Length = 622

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 276 PQKEDRTEGPHPCPHKRFHQTLFDSIQFLLYHQQIPS-RQHPLHHP 142
           PQ   R+  PHP PH + H  L         H Q PS  QH  HHP
Sbjct: 391 PQHPQRS--PHPAPHPQQHSQLQSP------HPQHPSPHQHIQHHP 428


>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H13 PE=2 SV=3
          Length = 612

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   MPCAKYQRNLQSQN-VVSSSRFTHSHIIKAAQTQSAPRARETENVSLKGDAEDAALKVF 176
           +P   +Q  L ++N  +++++  H+HI+K    Q  P A    NV  K  A   AL+VF
Sbjct: 3   IPHYLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVF 61


>sp|P08863|NO26B_SOYBN Nodulin-26B OS=Glycine max PE=2 SV=2
          Length = 219

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 251 PSVLSSFWGELLHARYSSCCYPSSARRG 334
           P+V +S  G L H+ + SC YPS A  G
Sbjct: 184 PNVATSPLGRLSHSIHESCVYPSGAESG 211
tr_hit_id A7P6B3
Definition tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 60
Score (bit) 56.6
E-value 8.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946966|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_F08, 5'
         (545 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome ...    57   8e-07
tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis...    57   8e-07
tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subs...    55   2e-06
tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella paten...    55   3e-06
tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medic...    53   9e-06
tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|Q9LUL9|Q9LUL9_ARATH Genomic DNA, chromosome 3, P1 clone: MLN2...    52   3e-05
tr|A9NNE4|A9NNE4_PICSI Putative uncharacterized protein OS=Picea...    51   5e-05
tr|A9S8K3|A9S8K3_PHYPA Predicted protein OS=Physcomitrella paten...    50   6e-05
tr|A9TMJ3|A9TMJ3_PHYPA Predicted protein OS=Physcomitrella paten...    50   8e-05
tr|Q0DX03|Q0DX03_ORYSJ Os02g0782900 protein OS=Oryza sativa subs...    48   4e-04
tr|Q94HC7|Q94HC7_ORYSJ Putative uncharacterized protein OSJNBb00...    47   5e-04
tr|B8BGM6|B8BGM6_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|Q6K7E4|Q6K7E4_ORYSJ Putative uncharacterized protein OJ1311_D...    46   0.001
tr|A3AC06|A3AC06_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.89 
tr|Q0SK68|Q0SK68_RHOSR Non-ribosomal peptide synthetase OS=Rhodo...    33   7.6  
tr|A6UHC7|A6UHC7_SINMW Outer membrane autotransporter barrel dom...    33   7.6  
tr|B6GD63|B6GD63_9ACTN Putative uncharacterized protein OS=Colli...    33   9.9  

>tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034001001
           PE=4 SV=1
          Length = 105

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 30/60 (50%), Positives = 37/60 (61%)
 Frame = +3

Query: 168 KVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMPDTRAAAILPLLGEVMYEI 347
           KVF D +KGIVCYR + GEIVCEG DEGP+ +       Y P  R A I+ LL +   +I
Sbjct: 25  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKNYHP--RDAEIIDLLQQNWLQI 82


>tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043719 PE=4 SV=1
          Length = 133

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 30/60 (50%), Positives = 37/60 (61%)
 Frame = +3

Query: 168 KVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMPDTRAAAILPLLGEVMYEI 347
           KVF D +KGIVCYR + GEIVCEG DEGP+ +       Y P  R A I+ LL +   +I
Sbjct: 53  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKNYHP--RDAEIIDLLQQNWLQI 110


>tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subsp.
           japonica GN=P0698A06.24 PE=2 SV=1
          Length = 127

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +3

Query: 84  KAAQTQSAPRARETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 257
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 23  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 80


>tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019601 PE=4 SV=1
          Length = 133

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +3

Query: 84  KAAQTQSAPRARETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 257
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 23  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 80


>tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21995 PE=4 SV=1
          Length = 128

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +3

Query: 84  KAAQTQSAPRARETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 257
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 24  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 81


>tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171438 PE=4 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 30/86 (34%), Positives = 44/86 (51%)
 Frame = +3

Query: 9   CAKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRARETENVSLKGDAEDAALKVFADDT 188
           CA    ++ S+N   S R     ++  +   S  RA  +  V   G   +    VF D++
Sbjct: 12  CASPPISISSRNPPPSQRLATVKMVPKSLRLSICRA--SSEVGPAGVIPEKESTVFKDES 69

Query: 189 KGIVCYRTESGEIVCEGMDEGPQFYP 266
           +GI+CY  E+G+I CEG DEGP F P
Sbjct: 70  QGIICYYDENGDITCEGWDEGPHFQP 95


>tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 133

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 105 APRARETEN-VSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGAN 281
           AP+ + T   V LK  A      V+ D+++GI+CY+ ESGEI+CEG DEGP +   S   
Sbjct: 35  APKKKSTVGPVLLKITASIKNKVVYEDESQGIICYQDESGEIICEGYDEGPSYRQISRPT 94

Query: 282 FYMPDTRAAAIL 317
            +  D     +L
Sbjct: 95  HHQRDVEIVNLL 106


>tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 130

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +3

Query: 3   MPCAKYQRNLQSQNVVSSSRFTHSHI-IKAAQTQSAPRARETENVSLKGDAEDAALKVFA 179
           M C +Y  ++    +  +SR T +   I      S+   +++ +VS  G A     KV+ 
Sbjct: 6   MRCYRYSPSVAMVPMRKTSRTTMTRASISTDGCSSSEPKKKSHSVSFAGKAN----KVYE 61

Query: 180 DDTKGIVCYRTESGEIVCEGMDEGPQ 257
           D   GI+CY  E+GE+VCEG+DEGP+
Sbjct: 62  DKDMGILCYTDENGELVCEGLDEGPR 87


>tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82514 PE=4 SV=1
          Length = 104

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = +3

Query: 138 LKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYM 290
           +K    +   +VF D++ GIVCY  E GEI CEG DEGP F P     + M
Sbjct: 9   MKNSHRNLPEQVFKDESNGIVCYVNEDGEITCEGWDEGPHFIPEPEKGYTM 59


>tr|Q9LUL9|Q9LUL9_ARATH Genomic DNA, chromosome 3, P1 clone: MLN21
           (Putative uncharacterized protein At3g14280) (At3g14280)
           OS=Arabidopsis thaliana GN=At3g14280 PE=2 SV=1
          Length = 141

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 31/110 (28%), Positives = 53/110 (48%)
 Frame = +3

Query: 24  RNLQSQNVVSSSRFTHSHIIKAAQTQSAPRARETENVSLKGDAEDAALKVFADDTKGIVC 203
           + ++++ ++      H  + KA  +Q  P    T+N+            VF D  +GI+C
Sbjct: 19  KTVRAKTLMLQQSQVHVKVKKATVSQPQPIRYSTKNI------------VFEDPIQGIIC 66

Query: 204 YRTESGEIVCEGMDEGPQFYPPSGANFYMPDTRAAAILPLLGEVMYEI*D 353
           Y  ++GE++CEG DEGP+   P+ +      +R   IL LL     E+ D
Sbjct: 67  YTDDNGEVICEGYDEGPRC--PTQSPMVASYSREVEILDLLQRSYQELSD 114