DK946977
Clone id YMU02A01NGRL0014_F24
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_F24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGG
TGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCA
CGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGAC
CGATAGCGAAGAAGTCCTGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCA
GAAGGGATCTCCCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGGAGAA
AGAATTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O67061
Definition sp|O67061|DAPB_AQUAE Dihydrodipicolinate reductase OS=Aquifex aeolicus
Align length 91
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946977|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_F24, 5'
(310 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O67061|DAPB_AQUAE Dihydrodipicolinate reductase OS=Aquifex ae... 30 2.9
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str... 30 4.9
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra... 30 4.9
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1 30 4.9
sp|Q12E37|COXX_POLSJ Protoheme IX farnesyltransferase OS=Polarom... 29 8.3

>sp|O67061|DAPB_AQUAE Dihydrodipicolinate reductase OS=Aquifex
aeolicus GN=dapB PE=3 SV=1
Length = 265

Score = 30.4 bits (67), Expect = 2.9
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPS-SMGHAKSRVNQRGPPCKAKYS*VTDSEEVLEEKGG 214
+E D D V G PS +G A + +G P ++ + +V+ E G
Sbjct: 19 IELALQDKDVEVVGGVEHPDCVPSIDLGEALGKEELKGKPLTSRLEELLPYTDVVIEFSG 78

Query: 215 LPTKYLTWQKGSPRDKKG*YIGTTSREEKEL 307
PT + + + +KK IGTT ++E+
Sbjct: 79 NPTAAVGHAELTTLEKKAIVIGTTGFTKQEI 109


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
AD169) GN=TRS1 PE=3 SV=1
Length = 788

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2

Query: 47 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
AD169) GN=IRS1 PE=3 SV=1
Length = 846

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2

Query: 47 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
Length = 750

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2

Query: 2 ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 106
E ++GF L G AV C P DG++ V + AS NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|Q12E37|COXX_POLSJ Protoheme IX farnesyltransferase
OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=ctaB
PE=3 SV=1
Length = 304

Score = 28.9 bits (63), Expect = 8.3
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -1

Query: 214 APLFFQDFFAIGHSGIFSLTRWSSLIHTGFCVPHA-TW--VGA*ASCTSGYWTITIWGAA 44
AP F F+A+ + L + +LI VPH TW V +G W + AA
Sbjct: 15 APSRFAQFYALTKPRVVQLIVFCALIGMVLAVPHVPTWPEVKLALIACAGIWLVAGAAAA 74

Query: 43 LNC 35
NC
Sbjct: 75 FNC 77


tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 53
Score (bit) 85.5
E-value 1.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946977|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_F24, 5'
(310 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 86 1e-15
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 86 1e-15
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 86 1e-15
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 86 1e-15
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 71 2e-11
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 55 1e-06
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 49 7e-06
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 51 3e-05
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 50 6e-05
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 49 1e-04
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen... 49 2e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 48 2e-04
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri... 47 4e-04
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri... 47 5e-04
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi... 46 0.001
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 44 0.003
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep... 44 0.003
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen... 44 0.003
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 44 0.003
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen... 44 0.003
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh... 44 0.004
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 44 0.004
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte... 44 0.005
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen... 43 0.009
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul... 42 0.012
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin... 42 0.020
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen... 41 0.034
tr|A7B6K6|A7B6K6_RUMGN Putative uncharacterized protein OS=Rumin... 40 0.045
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost... 40 0.059

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 79

Score = 85.5 bits (210), Expect = 1e-15
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 75


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 87

Score = 85.5 bits (210), Expect = 1e-15
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 81


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 90

Score = 85.5 bits (210), Expect = 1e-15
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 84


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 85

Score = 85.5 bits (210), Expect = 1e-15
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = +2

Query: 38 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 79


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
(Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
Length = 52

Score = 71.2 bits (173), Expect = 2e-11
Identities = 34/46 (73%), Positives = 39/46 (84%)
Frame = +2

Query: 59 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
G+SPV+ S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 1 GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 46


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
Length = 44

Score = 55.5 bits (132), Expect = 1e-06
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = -1

Query: 193 FFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 95
+FAIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 12 YFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
PE=4 SV=1
Length = 390

Score = 48.9 bits (115), Expect(2) = 7e-06
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = -1

Query: 193 FFAIGHSGIFSLTRWSSLIHTGFCVPHAT 107
+FAI H +FSL RWS LIHTGF VPHAT
Sbjct: 244 YFAISHPEVFSLARWSLLIHTGFHVPHAT 272



Score = 23.9 bits (50), Expect(2) = 7e-06
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2

Query: 90 LAVLPATGLSPSGVQH 43
L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
Length = 259

Score = 50.8 bits (120), Expect = 3e-05
Identities = 27/52 (51%), Positives = 32/52 (61%)
Frame = -2

Query: 210 PFSSRTSSLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 55
PF TSSLSVT+EYL L+ GP F +DF CP LL + TGLSP+
Sbjct: 106 PFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPA 154


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
Length = 101

Score = 50.1 bits (118), Expect = 6e-05
Identities = 26/52 (50%), Positives = 32/52 (61%)
Frame = -2

Query: 210 PFSSRTSSLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 55
PF T SLSV++EYLA +GGP F +DF CP LL + TGLSP+
Sbjct: 30 PFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00011927001 PE=4 SV=1
Length = 60

Score = 49.3 bits (116), Expect = 1e-04
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +2

Query: 2 ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 145
ES++ LL EA ECCT DG+SPVA S S S+ SSMGH + +R
Sbjct: 13 ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60