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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946977
Clone id YMU02A01NGRL0014_F24
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_F24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGG
TGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCA
CGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGAC
CGATAGCGAAGAAGTCCTGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCA
GAAGGGATCTCCCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGGAGAA
AGAATTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O67061
Definition sp|O67061|DAPB_AQUAE Dihydrodipicolinate reductase OS=Aquifex aeolicus
Align length 91
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946977|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_F24, 5'
         (310 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O67061|DAPB_AQUAE Dihydrodipicolinate reductase OS=Aquifex ae...    30   2.9  
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   4.9  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   4.9  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   4.9  
sp|Q12E37|COXX_POLSJ Protoheme IX farnesyltransferase OS=Polarom...    29   8.3  

>sp|O67061|DAPB_AQUAE Dihydrodipicolinate reductase OS=Aquifex
           aeolicus GN=dapB PE=3 SV=1
          Length = 265

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPS-SMGHAKSRVNQRGPPCKAKYS*VTDSEEVLEEKGG 214
           +E    D D  V G        PS  +G A  +   +G P  ++   +    +V+ E  G
Sbjct: 19  IELALQDKDVEVVGGVEHPDCVPSIDLGEALGKEELKGKPLTSRLEELLPYTDVVIEFSG 78

Query: 215 LPTKYLTWQKGSPRDKKG*YIGTTSREEKEL 307
            PT  +   + +  +KK   IGTT   ++E+
Sbjct: 79  NPTAAVGHAELTTLEKKAIVIGTTGFTKQEI 109


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 47  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 47  CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 154
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 2   ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 106
           E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|Q12E37|COXX_POLSJ Protoheme IX farnesyltransferase
           OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=ctaB
           PE=3 SV=1
          Length = 304

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -1

Query: 214 APLFFQDFFAIGHSGIFSLTRWSSLIHTGFCVPHA-TW--VGA*ASCTSGYWTITIWGAA 44
           AP  F  F+A+    +  L  + +LI     VPH  TW  V       +G W +    AA
Sbjct: 15  APSRFAQFYALTKPRVVQLIVFCALIGMVLAVPHVPTWPEVKLALIACAGIWLVAGAAAA 74

Query: 43  LNC 35
            NC
Sbjct: 75  FNC 77
tr_hit_id A6H5B3
Definition tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata
Align length 53
Score (bit) 85.5
E-value 1.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946977|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_F24, 5'
         (310 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    86   1e-15
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    86   1e-15
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    86   1e-15
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    86   1e-15
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    71   2e-11
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            55   1e-06
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    49   7e-06
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    51   3e-05
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    50   6e-05
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    49   1e-04
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    49   2e-04
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    48   2e-04
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    47   4e-04
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    47   5e-04
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    46   0.001
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    44   0.003
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    44   0.003
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    44   0.003
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    44   0.003
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    44   0.003
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.003
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    44   0.004
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    44   0.004
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    44   0.005
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen...    43   0.009
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    42   0.012
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin...    42   0.020
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen...    41   0.034
tr|A7B6K6|A7B6K6_RUMGN Putative uncharacterized protein OS=Rumin...    40   0.045
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    40   0.059

>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 40/53 (75%), Positives = 45/53 (84%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 75


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 40/53 (75%), Positives = 45/53 (84%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 81


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 40/53 (75%), Positives = 45/53 (84%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 84


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 40/53 (75%), Positives = 45/53 (84%)
 Frame = +2

Query: 38  VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 79


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = +2

Query: 59  GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEEV 196
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE V
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVV 46


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = -1

Query: 193 FFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 95
           +FAIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 12  YFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 48.9 bits (115), Expect(2) = 7e-06
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = -1

Query: 193 FFAIGHSGIFSLTRWSSLIHTGFCVPHAT 107
           +FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 244 YFAISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 23.9 bits (50), Expect(2) = 7e-06
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 90  LAVLPATGLSPSGVQH 43
           L +L ATG SPS VQH
Sbjct: 274 LVMLSATGHSPSRVQH 289


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 27/52 (51%), Positives = 32/52 (61%)
 Frame = -2

Query: 210 PFSSRTSSLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 55
           PF   TSSLSVT+EYL L+ GP  F +DF CP LL  +        TGLSP+
Sbjct: 106 PFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPA 154


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
          Length = 101

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 26/52 (50%), Positives = 32/52 (61%)
 Frame = -2

Query: 210 PFSSRTSSLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPS 55
           PF   T SLSV++EYLA +GGP  F +DF CP LL      +    TGLSP+
Sbjct: 30  PFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLNTSHRAS---HTGLSPA 78


>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011927001 PE=4 SV=1
          Length = 60

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 25/48 (52%), Positives = 31/48 (64%)
 Frame = +2

Query: 2   ESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 145
           ES++   LL EA ECCT DG+SPVA S  S  S+ SSMGH   +  +R
Sbjct: 13  ESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60