NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946980
Clone id YMU02A01NGRL0014_G03
Library
Length 289
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_G03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATATTTACATTATTTGTAATAGCCGTTGCAGCTGCTGAAGCTGCTACCGGGTTAGCTAT
TGCCCTTTCTATACATCGAAACAGGAGATCTACTCGTATCGATCAATCGAATTTGTTAAA
ATGGTGATTGATTGATAGGTTATACAGTTTTAAACACCTAGTTGTTGAATTTTCCCTTGG
CGGCGATATTTTCACCTCAACAAATTAGTTTGATACTTTCTTCCAATTATATCTGCTAAC
TAACACCTTTTTTAGTTTACCATAACTTCAATATATAGCTTATCCCCCC
■■Homology search results ■■ -
sp_hit_id Q85FH3
Definition sp|Q85FH3|NU4LC_ADICA NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Adiantum capillus-veneris
Align length 41
Score (bit) 52.0
E-value 9.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946980|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_G03, 5'
         (289 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FH3|NU4LC_ADICA NAD(P)H-quinone oxidoreductase subunit 4L,...    52   9e-07
sp|P06260|NU4LC_MARPO NAD(P)H-quinone oxidoreductase subunit 4L,...    42   7e-04
sp|B1VKI6|NU4LC_CRYJA NAD(P)H-quinone oxidoreductase subunit 4L,...    40   0.003
sp|Q6YXQ1|NU4LC_PHYPA NAD(P)H-quinone oxidoreductase subunit 4L,...    40   0.004
sp|Q70XW2|NU4LC_AMBTC NAD(P)H-quinone oxidoreductase subunit 4L,...    40   0.004
sp|A6H5P4|NU4LC_CYCTA NAD(P)H-quinone oxidoreductase subunit 4L,...    39   0.010
sp|A2T385|NU4LC_ANGEV NAD(P)H-quinone oxidoreductase subunit 4L,...    39   0.010
sp|Q06GK7|NU4LC_PIPCE NAD(P)H-quinone oxidoreductase subunit 4L,...    38   0.014
sp|Q06GU4|NU4LC_DRIGR NAD(P)H-quinone oxidoreductase subunit 4L,...    38   0.014
sp|A6MMH5|NU4LC_CHLSC NAD(P)H-quinone oxidoreductase subunit 4L,...    38   0.014
sp|Q7YJT2|NU4LC_CALFG NAD(P)H-quinone oxidoreductase subunit 4L,...    38   0.014
sp|P69379|NU4LC_WHEAT NAD(P)H-quinone oxidoreductase subunit 4L,...    38   0.018
sp|A8Y9D9|NU4LC_LOLPR NAD(P)H-quinone oxidoreductase subunit 4L,...    38   0.018
sp|P69378|NU4LC_HORVU NAD(P)H-quinone oxidoreductase subunit 4L,...    38   0.018
sp|A1EA61|NU4LC_AGRST NAD(P)H-quinone oxidoreductase subunit 4L,...    38   0.018
sp|Q32S05|NU4LC_STAPU NAD(P)H-quinone oxidoreductase subunit 4L,...    37   0.023
sp|A7Y3L4|NU4LC_IPOPU NAD(P)H-quinone oxidoreductase subunit 4L,...    37   0.023
sp|A1XGT9|NU4LC_RANMC NAD(P)H-quinone oxidoreductase subunit 4L,...    37   0.030
sp|Q5SCZ8|NU4LC_HUPLU NAD(P)H-quinone oxidoreductase subunit 4L,...    37   0.030
sp|A8SEF7|NU4LC_CERDE NAD(P)H-quinone oxidoreductase subunit 4L,...    37   0.030
sp|Q8M9T9|NU4LC_CHAGL NAD(P)H-quinone oxidoreductase subunit 4L,...    37   0.039
sp|A1E9X6|NU4LC_SORBI NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052
sp|Q6ENP5|NU4LC_SACOF NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052
sp|Q6L3D8|NU4LC_SACHY NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052
sp|P0C334|NU4LC_ORYSJ NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052
sp|P0C333|NU4LC_ORYSI NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052
sp|P0C332|NU4LC_ORYSA NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052
sp|Q6ENA5|NU4LC_ORYNI NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052
sp|P11646|NU4LC_MAIZE NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052
sp|B3TNA1|NU4LC_BRADI NAD(P)H-quinone oxidoreductase subunit 4L,...    36   0.052

>sp|Q85FH3|NU4LC_ADICA NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Adiantum capillus-veneris GN=ndhE PE=2
           SV=3
          Length = 99

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 27/41 (65%), Positives = 27/41 (65%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IFTLFVI              LSIHRNRRSTRIDQSNLLKW
Sbjct: 59  IFTLFVIAVAAAEAATGLAIALSIHRNRRSTRIDQSNLLKW 99


>sp|P06260|NU4LC_MARPO NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Marchantia polymorpha GN=ndhE PE=3 SV=1
          Length = 100

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IF++F+I              L+I+RNR+STRIDQ NLLKW
Sbjct: 60  IFSIFIIAIAAAEATIGLAIVLAIYRNRKSTRIDQFNLLKW 100


>sp|B1VKI6|NU4LC_CRYJA NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Cryptomeria japonica GN=ndhE PE=3 SV=1
          Length = 100

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IF++FVI              L+I+RNR+STRIDQ NL KW
Sbjct: 60  IFSIFVIAIAAAEAAIGLAIVLAIYRNRKSTRIDQFNLSKW 100


>sp|Q6YXQ1|NU4LC_PHYPA NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Physcomitrella patens GN=ndhE PE=3 SV=1
          Length = 100

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IF +F+I              L+I+RN+ STRIDQ NLLKW
Sbjct: 60  IFAIFIIAIAAAEAAIGLAIVLAIYRNKNSTRIDQFNLLKW 100


>sp|Q70XW2|NU4LC_AMBTC NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Amborella trichopoda GN=ndhE PE=3 SV=1
          Length = 101

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 21/40 (52%), Positives = 25/40 (62%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLK 121
           IF++FVI               SIHRNR+STRI+QSNLLK
Sbjct: 61  IFSIFVIAIAAAEAAIGPAIVSSIHRNRKSTRINQSNLLK 100


>sp|A6H5P4|NU4LC_CYCTA NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Cycas taitungensis GN=ndhE PE=3 SV=1
          Length = 100

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IF++FV               L+I+RNR+STRIDQ NL KW
Sbjct: 60  IFSIFVTAIAAAEAAIGLAIALAIYRNRKSTRIDQFNLSKW 100


>sp|A2T385|NU4LC_ANGEV NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Angiopteris evecta GN=ndhE PE=3 SV=1
          Length = 100

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 20/41 (48%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IF++ VI              L I+RNR+STRIDQ NLLKW
Sbjct: 60  IFSISVIAIAAAEAAIGLSIILIIYRNRKSTRIDQFNLLKW 100


>sp|Q06GK7|NU4LC_PIPCE NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Piper cenocladum GN=ndhE PE=3 SV=1
          Length = 101

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLL 118
           IF++FVI               SIHRNR+STRI+QSNLL
Sbjct: 61  IFSIFVITIAAAEAAIGLAIVSSIHRNRKSTRINQSNLL 99


>sp|Q06GU4|NU4LC_DRIGR NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Drimys granadensis GN=ndhE PE=3 SV=1
          Length = 101

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLL 118
           IF++FVI               SIHRNR+STRI+QSNLL
Sbjct: 61  IFSIFVIAIAAAEAAIGPAIVSSIHRNRKSTRINQSNLL 99


>sp|A6MMH5|NU4LC_CHLSC NAD(P)H-quinone oxidoreductase subunit 4L,
           chloroplastic OS=Chloranthus spicatus GN=ndhE PE=3 SV=1
          Length = 101

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLL 118
           IF++FVI               SIHRNR+STRI+QSNLL
Sbjct: 61  IFSIFVIAIAAAEAAIGPAIVSSIHRNRKSTRINQSNLL 99
tr_hit_id A9QB19
Definition tr|A9QB19|A9QB19_9SPER NAD(P)H-quinone oxidoreductase chain 4L, chloroplast (Fragment) OS=Cycas micronesica
Align length 41
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946980|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_G03, 5'
         (289 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9QB19|A9QB19_9SPER NAD(P)H-quinone oxidoreductase chain 4L, ...    39   0.17 
tr|A9QB96|A9QB96_ELAOL NAD(P)H-quinone oxidoreductase chain 4L, ...    38   0.22 
tr|B8Y2U5|B8Y2U5_FESAR NADH-plastoquinone oxidoreductase subunit...    38   0.29 
tr|A9QCB4|A9QCB4_TYPLA NAD(P)H-quinone oxidoreductase chain 4L, ...    38   0.29 
tr|A9QBI8|A9QBI8_MUSAC NAD(P)H-quinone oxidoreductase chain 4L, ...    38   0.29 
tr|Q4C9Z5|Q4C9Z5_CROWT NADH-ubiquinone oxidoreductase, chain 4L ...    37   0.49 
tr|B1WPK1|B1WPK1_CYAA5 NADH dehydrogenase subunit 4L OS=Cyanothe...    37   0.64 
tr|A3ISX3|A3ISX3_9CHRO NADH dehydrogenase subunit K OS=Cyanothec...    37   0.64 
tr|B6D429|B6D429_9MARC NADH-plastoquinone oxidoreductase subunit...    37   0.64 
tr|A9QBF3|A9QBF3_GINBI NAD(P)H-quinone oxidoreductase chain 4L, ...    36   0.84 
tr|A9QAU2|A9QAU2_9APIA NAD(P)H-quinone oxidoreductase chain 4L, ...    36   1.1  
tr|A9QAP1|A9QAP1_9ASPA NAD(P)H-quinone oxidoreductase chain 4L, ...    36   1.1  
tr|A7KVS5|A7KVS5_OLEEU NAD(P)H-quinone oxidoreductase chain 4L, ...    36   1.1  
tr|B8HQP8|B8HQP8_9CHRO NADH-ubiquinone oxidoreductase chain 4L O...    35   1.4  
tr|B0BZW5|B0BZW5_ACAM1 Proton-translocating NAD(P)H-quinone oxid...    35   2.4  
tr|B7T337|B7T337_9ROSI NADH-plastoquinone oxidoreductase subunit...    35   2.4  
tr|Q5N5M1|Q5N5M1_SYNP6 NADH dehydrogenase subunit 4L OS=Synechoc...    34   3.2  
tr|Q31NJ3|Q31NJ3_SYNE7 NADH dehydrogenase subunit 4L OS=Synechoc...    34   3.2  
tr|B4W1D4|B4W1D4_9CYAN NADH-ubiquinone/plastoquinone oxidoreduct...    34   3.2  
tr|B7T3H8|B7T3H8_9ROSI NADH-plastoquinone oxidoreductase subunit...    34   3.2  
tr|B7T3A7|B7T3A7_9ROSI NADH-plastoquinone oxidoreductase subunit...    34   3.2  
tr|B0JHQ2|B0JHQ2_MICAN NADH dehydrogenase subunit 4L OS=Microcys...    34   4.2  
tr|B7KK58|B7KK58_9CHRO NADH-ubiquinone oxidoreductase chain 4L O...    34   4.2  
tr|B4AUM3|B4AUM3_9CHRO NADH-ubiquinone oxidoreductase chain 4L O...    34   4.2  
tr|A8YL58|A8YL58_MICAE NdhE protein OS=Microcystis aeruginosa PC...    34   4.2  
tr|A9QBY4|A9QBY4_9ASTR NAD(P)H-quinone oxidoreductase chain 4L, ...    34   4.2  
tr|Q3M9K6|Q3M9K6_ANAVT NADH-ubiquinone oxidoreductase, chain 4L ...    33   5.4  
tr|B2J7W2|B2J7W2_NOSP7 NADH-ubiquinone oxidoreductase, chain 4L ...    33   5.4  
tr|A0ZMQ0|A0ZMQ0_NODSP NADH dehydrogenase kappa subunit OS=Nodul...    33   5.4  
tr|B8R4B5|B8R4B5_TRISU NADH-plastoquinone oxidoreductase subunit...    33   5.4  

>tr|A9QB19|A9QB19_9SPER NAD(P)H-quinone oxidoreductase chain 4L,
           chloroplast (Fragment) OS=Cycas micronesica GN=ndhE PE=3
           SV=1
          Length = 100

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IF++FV               L+I+RNR+STRIDQ NL KW
Sbjct: 60  IFSIFVTAIAAAEAAIGLAIALAIYRNRKSTRIDQFNLSKW 100


>tr|A9QB96|A9QB96_ELAOL NAD(P)H-quinone oxidoreductase chain 4L,
           chloroplast (Fragment) OS=Elaeis oleifera GN=ndhE PE=3
           SV=1
          Length = 101

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLL 118
           IF++FVI               SIHRNR+STRI+QSNLL
Sbjct: 61  IFSIFVIAVAAAEAAIGLAIVSSIHRNRKSTRINQSNLL 99


>tr|B8Y2U5|B8Y2U5_FESAR NADH-plastoquinone oxidoreductase subunit 4L
           OS=Festuca arundinacea GN=ndhE PE=4 SV=1
          Length = 101

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/39 (51%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLL 118
           IF +FVI               SIHRNR+STRI+QSNLL
Sbjct: 61  IFAIFVIALAAAEAAIGLSILSSIHRNRKSTRINQSNLL 99


>tr|A9QCB4|A9QCB4_TYPLA NAD(P)H-quinone oxidoreductase chain 4L,
           chloroplast (Fragment) OS=Typha latifolia GN=ndhE PE=3
           SV=1
          Length = 101

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLL 118
           IF++F+I               SIHRNR+STRI+QSNLL
Sbjct: 61  IFSIFIIAIAAAEAAIGLAIVSSIHRNRKSTRINQSNLL 99


>tr|A9QBI8|A9QBI8_MUSAC NAD(P)H-quinone oxidoreductase chain 4L,
           chloroplast (Fragment) OS=Musa acuminata GN=ndhE PE=3
           SV=1
          Length = 101

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLL 118
           IF++F+I               SIHRNR+STRI+QSNLL
Sbjct: 61  IFSIFIIAVAAAEAAIGLAIVSSIHRNRKSTRINQSNLL 99


>tr|Q4C9Z5|Q4C9Z5_CROWT NADH-ubiquinone oxidoreductase, chain 4L
           OS=Crocosphaera watsonii GN=CwatDRAFT_6240 PE=3 SV=1
          Length = 103

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IFT+FVI              L+I+RNR +T ++Q NLLKW
Sbjct: 63  IFTIFVITVAAAEAAVGLAIVLTIYRNRETTDMEQFNLLKW 103


>tr|B1WPK1|B1WPK1_CYAA5 NADH dehydrogenase subunit 4L OS=Cyanothece
           (strain ATCC 51142) GN=ndhE PE=4 SV=1
          Length = 103

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IFT+FVI              L+I+RNR +T ++Q NLLKW
Sbjct: 63  IFTVFVITVAAAEAAVGLAIVLTIYRNRETTDMEQFNLLKW 103


>tr|A3ISX3|A3ISX3_9CHRO NADH dehydrogenase subunit K OS=Cyanothece
           sp. CCY 0110 GN=CY0110_28764 PE=3 SV=1
          Length = 103

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IFT+FVI              L+I+RNR +T ++Q NLLKW
Sbjct: 63  IFTVFVITVAAAEAAVGLAIVLTIYRNRETTDMEQFNLLKW 103


>tr|B6D429|B6D429_9MARC NADH-plastoquinone oxidoreductase subunit 4L
           OS=Aneura pinguis GN=ndhE PE=4 SV=1
          Length = 100

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IF++F++               +I+RNR+S RIDQ NLLKW
Sbjct: 60  IFSIFILAIAAAEATIGLAIVPAIYRNRKSIRIDQFNLLKW 100


>tr|A9QBF3|A9QBF3_GINBI NAD(P)H-quinone oxidoreductase chain 4L,
           chloroplast (Fragment) OS=Ginkgo biloba GN=ndhE PE=3
           SV=1
          Length = 101

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   IFTLFVIXXXXXXXXXXXXXXLSIHRNRRSTRIDQSNLLKW 124
           IF++FVI               +I+ NR+STRI+Q NLLKW
Sbjct: 61  IFSIFVIAIAAAEAAIGLAIVPAIYHNRKSTRINQLNLLKW 101