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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947004
Clone id YMU02A01NGRL0014_H07
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_H07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGCAAGGCAGCGACAGCAAATATGGGCCTGTTTGGAGGATGGCGCAAGAAGAAAGCTTC
CAAGGAGGGGGAAGCAGAGGGCGCTCCTGCAAACCCTAGTTCGACTGTCACTTCTAGCCA
ACAGCAGCAGCAGCAGTCTCCTCCAGAGACGAGCGTTTTTGAGTTTGGCTCTGCAAGTGC
AGCAGGTGAGGAGCGCCTAACAATTGCAGGATACTGCCCGGTGTCCAATGATCTGGAGCC
TTGCCGCTGGGAGGTTTTGCCTGCACCTCCCCCTGATAACACTGCCCCCCTTTTTCGCAT
CGTCTTCTGATTGGCATCCTAGACATAGTCCTGAAGGTTTTTCTTCTTGTTGTTTGCATA
TCAACAGAACACAGAAAGGTAGCTTTGTCAACTTTCCTTTTTACCGAACCTCCTCCTCCT
CTCATTGAAGAGAAAGGCTTCTGCTTTTTTGTTGGAGTGACAATGGTGTATGTGGAGAAC
TGTGTGTTTAATTCCCTAATTTTTTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9DAT2
Definition sp|Q9DAT2|MRGBP_MOUSE MRG-binding protein OS=Mus musculus
Align length 49
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947004|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_H07, 5'
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DAT2|MRGBP_MOUSE MRG-binding protein OS=Mus musculus GN=Mrg...    32   2.2  
sp|Q9Y2H5|PKHA6_HUMAN Pleckstrin homology domain-containing fami...    30   4.9  
sp|Q1DAN9|PANB_MYXXD 3-methyl-2-oxobutanoate hydroxymethyltransf...    30   6.6  
sp|A4WQZ1|SYR_RHOS5 Arginyl-tRNA synthetase OS=Rhodobacter sphae...    30   8.4  
sp|Q646R8|MATK_CUPAN Maturase K OS=Cupaniopsis anacardioides GN=...    30   8.4  

>sp|Q9DAT2|MRGBP_MOUSE MRG-binding protein OS=Mus musculus GN=Mrgbp
           PE=2 SV=1
          Length = 218

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 355 KQQEEKPSGLCLGCQSEDDAKKGGSVIRGRCRQNLPAARLQIIGHRAVS 209
           K +E+  S L  GC+    A++ GS+ R  C  N PA   Q   HR +S
Sbjct: 159 KDKEKNSSDL--GCKEGQTAERTGSLTRSDCNSNPPAQCCQEGAHRTLS 205


>sp|Q9Y2H5|PKHA6_HUMAN Pleckstrin homology domain-containing family A
            member 6 OS=Homo sapiens GN=PLEKHA6 PE=1 SV=4
          Length = 1048

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
 Frame = -2

Query: 488  NTQFSTYTIVTPTKKQKPFSSMRGGGGSVKR---KVDKATFLCSVD--MQTTRRKTFRTM 324
            N+  S  +  + T    PFS + G  GS  +      KA +  S     QT    T R +
Sbjct: 689  NSPASPLSSASLTSPLSPFSLVSGSQGSPTKPGSNEPKANYEQSKKDPHQTLPLDTPRDI 748

Query: 323  SRMPIRRRCEKGGQCYQGEVQAKPPSGKAP--DHWTPGSIXXXXXXXXXXXXQSQTQKRS 150
            S +P R+  E   Q    +V   PP  K+P  D  TP ++             SQ + +S
Sbjct: 749  SLVPTRQEVEAEKQAALNKVGVVPPRTKSPTDDEVTPSAVVRRNASGLTNGLSSQERPKS 808

Query: 149  SL 144
            ++
Sbjct: 809  AV 810


>sp|Q1DAN9|PANB_MYXXD 3-methyl-2-oxobutanoate
           hydroxymethyltransferase OS=Myxococcus xanthus (strain
           DK 1622) GN=panB PE=3 SV=1
          Length = 305

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 315 ANQKTMRKRGAVLSGGGAGKTSQRQGSRSLDTGQYPAIVRRSSP 184
           +NQ+ +R  G +++ GGAG      G+   DT +  AIVR S P
Sbjct: 94  SNQEAVRNAGRLVAEGGAGSIKLEGGAEFADTVR--AIVRASIP 135


>sp|A4WQZ1|SYR_RHOS5 Arginyl-tRNA synthetase OS=Rhodobacter
           sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=argS PE=3
           SV=1
          Length = 580

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 389 DKATFLCSVDMQTTRRKTFRTMSRMPIRRRCEKGGQCYQGEVQAKPPSGKAPDHWTP 219
           D A     +D+ ++ +  + T       +R +  G  Y+G ++  PP GK P+ W P
Sbjct: 248 DLAALGVEMDVYSSEKALYGTGKIEAALQRLQDMGLIYEGVLE--PPKGKTPEDWEP 302


>sp|Q646R8|MATK_CUPAN Maturase K OS=Cupaniopsis anacardioides
           GN=matK PE=3 SV=1
          Length = 507

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 225 PMIWSLAAGRFCLHLPLITLPPFFASSSDWHPRHSPEGFSSCCLHINRTQKGSFVNFPFY 404
           PM+ SL   RFC  L      P +A SSD    H  + F   C +++    GS      Y
Sbjct: 370 PMVESLTKARFCNPLGNPISKPIWADSSD---SHIIDRFVRICRNLSHYHSGSSKKKSLY 426

Query: 405 R 407
           R
Sbjct: 427 R 427
tr_hit_id Q9M1Z0
Definition tr|Q9M1Z0|Q9M1Z0_ARATH Allyl alcohol dehydrogenase-like protein OS=Arabidopsis thaliana
Align length 51
Score (bit) 73.6
E-value 5.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947004|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_H07, 5'
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9M1Z0|Q9M1Z0_ARATH Allyl alcohol dehydrogenase-like protein ...    74   5e-12
tr|Q8VZ93|Q8VZ93_ARATH Allyl alcohol dehydrogenase-like protein ...    74   5e-12
tr|A5BJC2|A5BJC2_VITVI Putative uncharacterized protein (Chromos...    71   3e-11
tr|A9PBB4|A9PBB4_POPTR Putative uncharacterized protein OS=Popul...    70   6e-11
tr|A9NYN1|A9NYN1_PICSI Putative uncharacterized protein OS=Picea...    67   5e-10
tr|A3B5J7|A3B5J7_ORYSJ Putative uncharacterized protein OS=Oryza...    66   8e-10
tr|A2Y674|A2Y674_ORYSI Putative uncharacterized protein OS=Oryza...    66   8e-10
tr|B6T5A5|B6T5A5_MAIZE Allyl alcohol dehydrogenase-like protein ...    65   2e-09
tr|Q1EJK2|Q1EJK2_PICAB Putative allyl alcohol dehydrogenase-like...    61   3e-08
tr|A9SHA5|A9SHA5_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   7e-04
tr|Q8LQJ5|Q8LQJ5_ORYSJ Putative uncharacterized protein B1151A10...    37   0.42 
tr|Q5TKE5|Q5TKE5_ORYSJ Putative uncharacterized protein OSJNBa00...    37   0.42 
tr|A2ZUM2|A2ZUM2_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.42 
tr|Q60E41|Q60E41_ORYSJ cDNA clone:J013170B15, full insert sequen...    36   0.94 
tr|A2Y1B6|A2Y1B6_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.94 
tr|Q2LGZ8|Q2LGZ8_TRIMO Putative uncharacterized protein (Fragmen...    34   3.6  
tr|B6TX37|B6TX37_MAIZE NDR1/HIN1-Like protein 2 OS=Zea mays PE=2...    34   3.6  
tr|B4FUU9|B4FUU9_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.6  
tr|A3CG21|A3CG21_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.7  
tr|A4I9Y9|A4I9Y9_LEIIN 8-oxoguanine DNA glycosylase, putative OS...    34   4.7  
tr|Q8CCH4|Q8CCH4_MOUSE Putative uncharacterized protein OS=Mus m...    33   6.1  
tr|Q8CAD4|Q8CAD4_MOUSE Putative uncharacterized protein OS=Mus m...    33   6.1  
tr|Q3UF29|Q3UF29_MOUSE Putative uncharacterized protein OS=Mus m...    33   6.1  
tr|Q75L54|Q75L54_ORYSJ Putative uncharacterized protein OSJNBa00...    33   6.1  
tr|Q2QVH9|Q2QVH9_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.1  
tr|B0X1V3|B0X1V3_CULQU Serotonin receptor OS=Culex quinquefascia...    33   6.1  
tr|A4HTV3|A4HTV3_LEIIN Putative uncharacterized protein OS=Leish...    33   7.8  
tr|Q94GT3|Q94GT3_ORYSA Putative uncharacterized protein OSJNBa00...    33   8.0  
tr|Q7XGM7|Q7XGM7_ORYSJ Putative uncharacterized protein (Putativ...    33   8.0  
tr|B7ZXT7|B7ZXT7_MAIZE Putative uncharacterized protein OS=Zea m...    33   8.0  

>tr|Q9M1Z0|Q9M1Z0_ARATH Allyl alcohol dehydrogenase-like protein
           OS=Arabidopsis thaliana GN=F24G16.110 PE=4 SV=1
          Length = 462

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +2

Query: 155 VFEFGSASAAGEERLTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           VFEFGS +A G+ R+T+AGYCPVS+DLEPCRWE+LPA   D  AP FR+VF
Sbjct: 415 VFEFGSVAATGD-RVTLAGYCPVSDDLEPCRWEILPADGKD--APQFRVVF 462


>tr|Q8VZ93|Q8VZ93_ARATH Allyl alcohol dehydrogenase-like protein
           (Putative uncharacterized protein At3g59835) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana
           GN=At3g59835 PE=4 SV=1
          Length = 97

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +2

Query: 155 VFEFGSASAAGEERLTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           VFEFGS +A G+ R+T+AGYCPVS+DLEPCRWE+LPA   D  AP FR+VF
Sbjct: 50  VFEFGSVAATGD-RVTLAGYCPVSDDLEPCRWEILPADGKD--APQFRVVF 97


>tr|A5BJC2|A5BJC2_VITVI Putative uncharacterized protein (Chromosome
           chr2 scaffold_11, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00015820001 PE=4 SV=1
          Length = 97

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = +2

Query: 155 VFEFGSASAAGEERLTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           VFEFGS  AA  +++T+AGYCPVS+DLEPCRWE+LPA   D  AP FR+VF
Sbjct: 50  VFEFGSV-AASSDKVTLAGYCPVSDDLEPCRWEILPASGSD--APQFRVVF 97


>tr|A9PBB4|A9PBB4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 98

 Score = 70.1 bits (170), Expect = 6e-11
 Identities = 32/51 (62%), Positives = 42/51 (82%)
 Frame = +2

Query: 155 VFEFGSASAAGEERLTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           VFEFGS SA  + ++T+AG+CPVS+DLEPCRWE++PA   D+ AP FR+VF
Sbjct: 51  VFEFGSVSATAD-KVTLAGFCPVSDDLEPCRWEIMPA--SDSDAPQFRVVF 98


>tr|A9NYN1|A9NYN1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 101

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 32/51 (62%), Positives = 39/51 (76%)
 Frame = +2

Query: 155 VFEFGSASAAGEERLTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           VFEFG A A  E+ +T+AGYCPVSND+EPCRWE+LP   P+  A  FR+VF
Sbjct: 54  VFEFGLA-AKSEDGITLAGYCPVSNDIEPCRWEILPTGDPE--AHQFRVVF 101


>tr|A3B5J7|A3B5J7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018319 PE=4 SV=1
          Length = 99

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 33/51 (64%), Positives = 40/51 (78%)
 Frame = +2

Query: 155 VFEFGSASAAGEERLTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           VFEFGSA+ +G   +T+AGYCPVS+DLEPCRWE++PA      AP FRIVF
Sbjct: 52  VFEFGSAAESGAA-VTLAGYCPVSDDLEPCRWELVPA--AGEGAPQFRIVF 99


>tr|A2Y674|A2Y674_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20497 PE=4 SV=1
          Length = 99

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 33/51 (64%), Positives = 40/51 (78%)
 Frame = +2

Query: 155 VFEFGSASAAGEERLTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           VFEFGSA+ +G   +T+AGYCPVS+DLEPCRWE++PA      AP FRIVF
Sbjct: 52  VFEFGSAAESGAA-VTLAGYCPVSDDLEPCRWELVPA--AGEGAPQFRIVF 99


>tr|B6T5A5|B6T5A5_MAIZE Allyl alcohol dehydrogenase-like protein
           OS=Zea mays PE=4 SV=1
          Length = 101

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 32/51 (62%), Positives = 41/51 (80%)
 Frame = +2

Query: 155 VFEFGSASAAGEERLTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           VFEFGSA+ +G   +T+AGYCPVS++LEPCRWE++PA    + AP FRIVF
Sbjct: 54  VFEFGSAAESGAA-VTLAGYCPVSDELEPCRWELVPAAV--DGAPQFRIVF 101


>tr|Q1EJK2|Q1EJK2_PICAB Putative allyl alcohol dehydrogenase-like
           protein (Fragment) OS=Picea abies GN=se1100 PE=4 SV=1
          Length = 37

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = +2

Query: 197 LTIAGYCPVSNDLEPCRWEVLPAPPPDNTAPLFRIVF 307
           +T+AGYCPVSND+EPCRWE+LP   P+  AP FR+VF
Sbjct: 3   ITLAGYCPVSNDIEPCRWEILPTGDPE--APQFRVVF 37


>tr|A9SHA5|A9SHA5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_79414 PE=4 SV=1
          Length = 267

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
 Frame = -1

Query: 300 MRKRGAVLSGGGAGKTSQRQGSRSLDTGQYPAIVRRSSPAALAEPNSKTLVSGGDCCCCC 121
           MR  GA L     G+ S  QGS S +TGQYPA   R +P++L +PNS TLVS        
Sbjct: 2   MRNLGASLPP--EGRISHLQGSISSETGQYPA---RVTPSSLLDPNSNTLVSDLKAALMS 56

Query: 120 WLEVTV-----ELGFAGAPSASPSLEAFFLRHPPNRPIFAVA 10
            L  +      +LG  G  +      AFFLR  P  P+  ++
Sbjct: 57  GLGGSAMAGDSKLGLLGWGAGGRVSSAFFLR--PKNPMVGIS 96