NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947008
Clone id YMU02A01NGRL0014_H12
Library
Length 217
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_H12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCCAGGTTGCTGGCTTCCTCGTCCAGAAGCCTGGCCAGTAACCTCATCTGAGTTACTCCT
TGGGAGACATTGATCACAATAATTTGGGAGGCAAATCGCCCTTTCAAAGCTCGATACGCT
GTCGTTGTGGCTGCTGTTGGCTTCATGTTTTGTCCATAAGGCATTTAGAGTATATGGACA
CACTTTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q0SS67
Definition sp|Q0SS67|GPDA_CLOPS Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Clostridium perfringens (strain SM101 / Type A)
Align length 48
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947008|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_H12, 5'
         (189 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0SS67|GPDA_CLOPS Glycerol-3-phosphate dehydrogenase [NAD(P)+...    30   2.9  
sp|Q8XJK2|GPDA_CLOPE Glycerol-3-phosphate dehydrogenase [NAD(P)+...    30   2.9  
sp|Q0TPK0|GPDA_CLOP1 Glycerol-3-phosphate dehydrogenase [NAD(P)+...    30   2.9  

>sp|Q0SS67|GPDA_CLOPS Glycerol-3-phosphate dehydrogenase [NAD(P)+]
           OS=Clostridium perfringens (strain SM101 / Type A)
           GN=gpsA PE=3 SV=1
          Length = 331

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
 Frame = -2

Query: 140 PTAATTTAYRALKGRFASQIIVINVSQGV---TQMRLLARLLDEEASN 6
           P+    TA + LKG+    +I+IN+++G+   T +R L++++++E  N
Sbjct: 80  PSHVIRTACKNLKGKINDDVIIINIAKGIEEGTNLR-LSQVINQELPN 126


>sp|Q8XJK2|GPDA_CLOPE Glycerol-3-phosphate dehydrogenase [NAD(P)+]
           OS=Clostridium perfringens GN=gpsA PE=3 SV=1
          Length = 331

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
 Frame = -2

Query: 140 PTAATTTAYRALKGRFASQIIVINVSQGV---TQMRLLARLLDEEASN 6
           P+    TA + LKG+    +I+IN+++G+   T +R L++++++E  N
Sbjct: 80  PSHVIRTACKNLKGKINDDVIIINIAKGIEEGTNLR-LSQVINQELPN 126


>sp|Q0TPK0|GPDA_CLOP1 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
           OS=Clostridium perfringens (strain ATCC 13124 / NCTC
           8237 / Type A) GN=gpsA PE=3 SV=1
          Length = 331

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
 Frame = -2

Query: 140 PTAATTTAYRALKGRFASQIIVINVSQGV---TQMRLLARLLDEEASN 6
           P+    TA + LKG+    +I+IN+++G+   T +R L++++++E  N
Sbjct: 80  PSHVIRTACKNLKGKINDDVIIINIAKGIEEGTNLR-LSQVINQELPN 126
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947008|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_H12, 5'
         (189 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******