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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947012
Clone id YMU02A01NGRL0014_H16
Library
Length 399
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_H16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGTTGTAAAATTTGGAAACGAATCAACTCGCTTTGTGAACGAATTTTTTTCTTTCTCGGG
GGGAGGAAATATGGAAAAATGGAAAGAGAAAAATTGGGTGAAATTTGAAAATATTTTGTA
TAACAGTTATAGTATGGATAATCAGTGACGTAATCGCCTTTATCAATCAACTTCAAGCAA
TTGGTGTATGTTAATCTATTTTTGGAAATATTGAGTTTAAGGATGAAATAACCTCCCTAT
TAGAACAAAGATATATCCCAAATAAGTATTTAAATGTTATTTCACGTCAATGTAAGAATT
TGACCGATCTTAAAGCATATTGTGAGAGCGCAAGATACAGGGAATTTCTTAGACTTCCAT
ACCACANATTAAAAAAATAAAAAGAAAAAAAGCACATGT
■■Homology search results ■■ -
sp_hit_id P58692
Definition sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120)
Align length 27
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947012|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_H16, 5'
         (399 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp. ...    30   3.7  
sp|Q5UP97|YL021_MIMIV Putative sel1-like repeat-containing prote...    30   4.9  
sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase OS=T...    30   4.9  
sp|B0K8S2|MTNA_THEP3 Methylthioribose-1-phosphate isomerase OS=T...    30   4.9  
sp|P14779|CPXB_BACME Bifunctional P-450/NADPH-P450 reductase OS=...    30   4.9  

>sp|P58692|SYN_ANASP Asparaginyl-tRNA synthetase OS=Anabaena sp.
           (strain PCC 7120) GN=asnS PE=3 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 215 LNISKNRLTYTNCLKLIDKGDYVTDYP 135
           +N    RLTYT+ +KL++K D   +YP
Sbjct: 301 INNQFERLTYTDAIKLLEKADVKFEYP 327


>sp|Q5UP97|YL021_MIMIV Putative sel1-like repeat-containing protein
           L21 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L21 PE=4
           SV=1
          Length = 533

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 5   VKFGNESTRFVNEFFSFSGGGNMEKWKEKNWVKFENILYNSYSMDNQ*RNRLYQ 166
           + F  E+  FVNE    + G +M +W E   ++F  + Y +    +   +R+Y+
Sbjct: 434 ITFDKENVSFVNEIIDITNGTDMNEWFES--LQFLKLNYQNLMKTSMNSSRIYK 485


>sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase
           OS=Thermoanaerobacter sp. (strain X514) GN=mtnA PE=3
           SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 207 NIEFKDEITSLLEQRYIPNKY 269
           +IEFK+E+  L++QR +PN Y
Sbjct: 6   SIEFKNEVLYLIDQRKLPNSY 26


>sp|B0K8S2|MTNA_THEP3 Methylthioribose-1-phosphate isomerase
           OS=Thermoanaerobacter pseudethanolicus (strain ATCC
           33223 / 39E) GN=mtnA PE=3 SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 207 NIEFKDEITSLLEQRYIPNKY 269
           +IEFK+E+  L++QR +PN Y
Sbjct: 6   SIEFKNEVLYLIDQRKLPNSY 26


>sp|P14779|CPXB_BACME Bifunctional P-450/NADPH-P450 reductase
           OS=Bacillus megaterium GN=CYP102A1 PE=1 SV=2
          Length = 1049

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 17  NESTRFVNEFFSFSGGGNMEKWK-EKNWVKFENILYNSYS 133
           +++ +FV +F   +G G    W  EKNW K  NIL  S+S
Sbjct: 73  SQALKFVRDF---AGDGLFTSWTHEKNWKKAHNILLPSFS 109
tr_hit_id B1C1Z4
Definition tr|B1C1Z4|B1C1Z4_9FIRM Putative uncharacterized protein OS=Clostridium spiroforme DSM 1552
Align length 67
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947012|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_H16, 5'
         (399 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1C1Z4|B1C1Z4_9FIRM Putative uncharacterized protein OS=Clost...    35   1.9  
tr|A7XCT5|A7XCT5_9POXV VCCR8 OS=Tanapox virus GN=145R PE=4 SV=1        34   4.1  
tr|A2DNK4|A2DNK4_TRIVA Surface antigen BspA-like OS=Trichomonas ...    33   5.4  
tr|Q9DHG8|Q9DHG8_YLDV 145R protein OS=Yaba-like disease virus GN...    33   7.0  
tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein OS=Arcob...    33   9.2  

>tr|B1C1Z4|B1C1Z4_9FIRM Putative uncharacterized protein
           OS=Clostridium spiroforme DSM 1552 GN=CLOSPI_01251 PE=4
           SV=1
          Length = 577

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 224 ILKLNISKNRLTYTNCLKLIDKGDYVTDYPYYNCYTKYFQISPNFSLSIFPYFLPPRKKK 45
           I K++ +  + +  N +K+IDK DY      YNCY   F       +  +  +L PR   
Sbjct: 424 ITKIDNNLYKTSKVNSIKIIDKSDYAKLVELYNCYCNKFNGYRKRDVEYYKEYLIPRCNA 483

Query: 44  IRSQSEL 24
              + EL
Sbjct: 484 YNEKIEL 490


>tr|A7XCT5|A7XCT5_9POXV VCCR8 OS=Tanapox virus GN=145R PE=4 SV=1
          Length = 323

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 75  KNGKRKIG*NLKIFCITVIVWIISDVIAFINQLQAIGV 188
           KN  R I   L +   TV++W+  +++ FIN LQ++G+
Sbjct: 222 KNKTRSIKIILTVVVFTVVLWVPFNIVLFINSLQSVGL 259


>tr|A2DNK4|A2DNK4_TRIVA Surface antigen BspA-like OS=Trichomonas
           vaginalis G3 GN=TVAG_113510 PE=4 SV=1
          Length = 778

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 191 TYTNCLKL--IDKGDY--VTDYPYYNCYTKYFQISPNFSLSIFPY 69
           T+ NC+ L  ID  D   + DY +YNC    F  SP+ S  +F +
Sbjct: 28  TFKNCINLGKIDISDITLINDYAFYNCTKLTFDSSPSSSCGVFKF 72


>tr|Q9DHG8|Q9DHG8_YLDV 145R protein OS=Yaba-like disease virus
           GN=145R PE=4 SV=1
          Length = 323

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 75  KNGKRKIG*NLKIFCITVIVWIISDVIAFINQLQAIGV 188
           KN  R I   L +   TV+ W+  +++ FIN LQ++G+
Sbjct: 222 KNKTRSIKIILTVVLFTVVFWVPFNIVLFINSLQSVGL 259


>tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein
           OS=Arcobacter butzleri (strain RM4018) GN=Abu_0202 PE=4
           SV=1
          Length = 430

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 198 IFGNIEFKDEITSLLEQRYIPNKYLNVISRQCKNLTDLK 314
           I+GN  FK EI  +L+   I     NVI ++  NL DLK
Sbjct: 5   IYGNQRFKKEIYKILDSSQIKKIDNNVIIKEISNLNDLK 43