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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947019
Clone id YMU02A01NGRL0014_I02
Library
Length 286
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_I02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGCCTCGAGCCAACGTCCGAGTACTAGGCGCTACGGCGCCGAAGTAACCCATGCCACAC
TCCCAAGAAAAGCTCGAACGACCTTTGACAAGTGGGTACCTGTACCCGAAACCGACACAG
GTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTTTCTCTAAGGAACTCGGCAAAA
TGGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACACGGGAGGTCGCAGCGACCAGGC
CCAGGCGACTGTTTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O14924
Definition sp|O14924|RGS12_HUMAN Regulator of G-protein signaling 12 OS=Homo sapiens
Align length 39
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947019|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_I02, 5'
         (257 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14924|RGS12_HUMAN Regulator of G-protein signaling 12 OS=Hom...    31   2.2  
sp|Q1GWK1|TRUA_SPHAL tRNA pseudouridine synthase A OS=Sphingopyx...    30   2.8  
sp|P21530|POLG_CSFVB Genome polyprotein OS=Classical swine fever...    29   8.2  
sp|P19712|POLG_CSFVA Genome polyprotein OS=Classical swine fever...    29   8.2  

>sp|O14924|RGS12_HUMAN Regulator of G-protein signaling 12 OS=Homo
            sapiens GN=RGS12 PE=1 SV=1
          Length = 1447

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 133  RIPRGARQLSLRNSAKWPRNFGRRGASSHGRSQRPGPGD 249
            R+P G+ +L+L   A   + F +R A+ +GR     PG+
Sbjct: 1221 RLPPGSTELTLPTPAAVAKGFSKRSATGNGRESASQPGE 1259


>sp|Q1GWK1|TRUA_SPHAL tRNA pseudouridine synthase A OS=Sphingopyxis
           alaskensis GN=truA PE=3 SV=1
          Length = 246

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = -1

Query: 212 EAPLLP-KLRGHFAEFLRESCLAPLGILYLP-------TCVGFGYRYPLVKGRSSFSWEC 57
           E PL P KL       LR + +A +G   +P        C+G  Y Y +V  R+  +W+ 
Sbjct: 67  EKPLTPFKLTEALNAQLRPAPIAVIGCEVVPDDWHARFACIGRSYEYRIVNRRAPLTWDK 126

Query: 56  GMGY 45
           G+ +
Sbjct: 127 GLAW 130


>sp|P21530|POLG_CSFVB Genome polyprotein OS=Classical swine fever
           virus (strain Brescia) PE=3 SV=1
          Length = 3898

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 242 GPGRCDLPCEEAPLLPKLRGHFAEFL 165
           GPG+ D   E+  +L ++ GH +EFL
Sbjct: 527 GPGKFDTNAEDGKILHEMGGHLSEFL 552


>sp|P19712|POLG_CSFVA Genome polyprotein OS=Classical swine fever
           virus (strain Alfort) PE=1 SV=2
          Length = 3898

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 242 GPGRCDLPCEEAPLLPKLRGHFAEFL 165
           GPG+ D   E+  +L ++ GH +EFL
Sbjct: 527 GPGKFDTNAEDGKILHEMGGHLSEFL 552
tr_hit_id A4QMC1
Definition tr|A4QMC1|A4QMC1_PINKO ORF61c OS=Pinus koraiensis
Align length 40
Score (bit) 73.2
E-value 6.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947019|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_I02, 5'
         (257 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QMC1|A4QMC1_PINKO ORF61c OS=Pinus koraiensis PE=4 SV=1            73   6e-12
tr|A6N128|A6N128_ORYSI Putative uncharacterized protein (Fragmen...    66   8e-10
tr|Q8CM04|Q8CM04_COREF Putative uncharacterized protein OS=Coryn...    58   2e-07
tr|A8STH6|A8STH6_9FIRM Putative uncharacterized protein OS=Copro...    58   3e-07
tr|A8SSN4|A8SSN4_9FIRM Putative uncharacterized protein OS=Copro...    58   3e-07
tr|A6BL01|A6BL01_9FIRM Putative uncharacterized protein OS=Dorea...    58   3e-07
tr|A6BKX8|A6BKX8_9FIRM Putative uncharacterized protein OS=Dorea...    58   3e-07
tr|B7R8W3|B7R8W3_9THEO Putative uncharacterized protein OS=Carbo...    55   1e-06
tr|B1QFN7|B1QFN7_CLOBO Putative uncharacterized protein OS=Clost...    55   2e-06
tr|A5Z304|A5Z304_9FIRM Putative uncharacterized protein OS=Eubac...    55   2e-06
tr|Q3BKI0|Q3BKI0_9PROT Putative uncharacterized protein OS=Magne...    54   5e-06
tr|A5ZYV3|A5ZYV3_9FIRM Putative uncharacterized protein OS=Rumin...    53   9e-06
tr|B1RTS4|B1RTS4_CLOPE Putative uncharacterized protein OS=Clost...    52   1e-05
tr|A8SBJ8|A8SBJ8_9FIRM Putative uncharacterized protein OS=Faeca...    52   1e-05
tr|A8S7Q9|A8S7Q9_9FIRM Putative uncharacterized protein OS=Faeca...    52   1e-05
tr|A8S6F2|A8S6F2_9FIRM Putative uncharacterized protein OS=Faeca...    52   1e-05
tr|A5KRC0|A5KRC0_9FIRM Putative uncharacterized protein OS=Rumin...    51   3e-05
tr|A5KL04|A5KL04_9FIRM Putative uncharacterized protein OS=Rumin...    51   3e-05
tr|A5KRI8|A5KRI8_9FIRM Putative uncharacterized protein OS=Rumin...    50   4e-05
tr|A5KRF0|A5KRF0_9FIRM Putative uncharacterized protein OS=Rumin...    50   4e-05
tr|A5KRD2|A5KRD2_9FIRM Putative uncharacterized protein OS=Rumin...    50   4e-05
tr|A5KP23|A5KP23_9FIRM Putative uncharacterized protein OS=Rumin...    50   4e-05
tr|A5KMC2|A5KMC2_9FIRM Putative uncharacterized protein OS=Rumin...    50   4e-05
tr|B1BC33|B1BC33_CLOBO Putative uncharacterized protein OS=Clost...    49   1e-04
tr|Q1MP76|Q1MP76_LAWIP NA OS=Lawsonia intracellularis (strain PH...    49   2e-04
tr|B0MGK0|B0MGK0_9FIRM Putative uncharacterized protein OS=Anaer...    48   2e-04
tr|B6G1S8|B6G1S8_9CLOT Putative uncharacterized protein OS=Clost...    47   4e-04
tr|A7B6K3|A7B6K3_RUMGN Putative uncharacterized protein OS=Rumin...    47   4e-04
tr|A7B5W6|A7B5W6_RUMGN Putative uncharacterized protein OS=Rumin...    47   4e-04
tr|A7VSA7|A7VSA7_9CLOT Putative uncharacterized protein OS=Clost...    47   5e-04

>tr|A4QMC1|A4QMC1_PINKO ORF61c OS=Pinus koraiensis PE=4 SV=1
          Length = 61

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 34/40 (85%), Positives = 36/40 (90%)
 Frame = +3

Query: 3   ASSQRPSTRRYGAEVTHATLPRKARTTFDKWVPVPETDTG 122
           ASSQ PST+RY AEVTHA LP KARTTF+KWVPVPETDTG
Sbjct: 21  ASSQCPSTKRYSAEVTHAILPGKARTTFNKWVPVPETDTG 60


>tr|A6N128|A6N128_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 65

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 28/31 (90%), Positives = 29/31 (93%)
 Frame = -1

Query: 137 ILYLPTCVGFGYRYPLVKGRSSFSWECGMGY 45
           ILYLPTCVGFGYRYP V+GRSSFSWE GMGY
Sbjct: 1   ILYLPTCVGFGYRYPFVEGRSSFSWEYGMGY 31


>tr|Q8CM04|Q8CM04_COREF Putative uncharacterized protein
           OS=Corynebacterium efficiens GN=CE1543 PE=4 SV=1
          Length = 261

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 31/51 (60%), Positives = 32/51 (62%)
 Frame = -1

Query: 254 KQSPGPGRCDLPCEEAPLLPKLRGHFAEFLRESCLAPLGILYLPTCVGFGY 102
           KQ P P        +APLLPKLRGHFAEFL  S    L ILYL TCVG GY
Sbjct: 92  KQIPSP-------VQAPLLPKLRGHFAEFLNHSSPERLSILYLTTCVGLGY 135


>tr|A8STH6|A8STH6_9FIRM Putative uncharacterized protein
           OS=Coprococcus eutactus ATCC 27759 GN=COPEUT_01474 PE=4
           SV=1
          Length = 108

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 32/55 (58%), Positives = 38/55 (69%)
 Frame = -2

Query: 208 HPFSRSYGAILPSSLEKVVSRP*VFSTYPPVSVSGTGTHLSKVVRAFLGSVAWVT 44
           H FSRSYG ILPSSL  ++     FS +PPVSV GTGTH  + + AFLGS  W+T
Sbjct: 12  HSFSRSYGVILPSSLTTLLPPALGFSPHPPVSVYGTGTH--ETIAAFLGS--WLT 62


>tr|A8SSN4|A8SSN4_9FIRM Putative uncharacterized protein
           OS=Coprococcus eutactus ATCC 27759 GN=COPEUT_01252 PE=4
           SV=1
          Length = 142

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 32/55 (58%), Positives = 38/55 (69%)
 Frame = -2

Query: 208 HPFSRSYGAILPSSLEKVVSRP*VFSTYPPVSVSGTGTHLSKVVRAFLGSVAWVT 44
           H FSRSYG ILPSSL  ++     FS +PPVSV GTGTH  + + AFLGS  W+T
Sbjct: 12  HSFSRSYGVILPSSLTTLLPPALGFSPHPPVSVYGTGTH--ETIAAFLGS--WLT 62


>tr|A6BL01|A6BL01_9FIRM Putative uncharacterized protein OS=Dorea
           longicatena DSM 13814 GN=DORLON_03015 PE=4 SV=1
          Length = 76

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 37/70 (52%), Positives = 44/70 (62%)
 Frame = -2

Query: 244 LGLVAATSRVRRHPFSRSYGAILPSSLEKVVSRP*VFSTYPPVSVSGTGTHLSKVVRAFL 65
           +G  +A S  R H FSRSYG ILPSSL  ++     FS +PPVSV GTG  LSK + AFL
Sbjct: 1   MGQFSAASS-RWHSFSRSYGVILPSSLTMLLPSALGFSPHPPVSVYGTG--LSKTIAAFL 57

Query: 64  GSVAWVTSAP 35
              AW+T  P
Sbjct: 58  D--AWLTHFP 65


>tr|A6BKX8|A6BKX8_9FIRM Putative uncharacterized protein OS=Dorea
           longicatena DSM 13814 GN=DORLON_02987 PE=4 SV=1
          Length = 109

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 37/70 (52%), Positives = 44/70 (62%)
 Frame = -2

Query: 244 LGLVAATSRVRRHPFSRSYGAILPSSLEKVVSRP*VFSTYPPVSVSGTGTHLSKVVRAFL 65
           +G  +A S  R H FSRSYG ILPSSL  ++     FS +PPVSV GTG  LSK + AFL
Sbjct: 1   MGQFSAASS-RWHSFSRSYGVILPSSLTMLLPSALGFSPHPPVSVYGTG--LSKTIAAFL 57

Query: 64  GSVAWVTSAP 35
              AW+T  P
Sbjct: 58  D--AWLTHFP 65


>tr|B7R8W3|B7R8W3_9THEO Putative uncharacterized protein
           OS=Carboxydibrachium pacificum DSM 12653 GN=CDSM653_949
           PE=4 SV=1
          Length = 155

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 32/52 (61%), Positives = 33/52 (63%)
 Frame = -1

Query: 257 GKQSPGPGRCDLPCEEAPLLPKLRGHFAEFLRESCLAPLGILYLPTCVGFGY 102
           GKQS GP  C L    A LLPKLR HFAEFL+E   A L IL  PTCVG  Y
Sbjct: 101 GKQSLGPLLCGL---SALLLPKLRSHFAEFLKEGSPARLWILSSPTCVGLRY 149


>tr|B1QFN7|B1QFN7_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0041 PE=4 SV=1
          Length = 151

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 31/55 (56%), Positives = 38/55 (69%)
 Frame = -2

Query: 256 VNSRLGLVAATSRVRRHPFSRSYGAILPSSLEKVVSRP*VFSTYPPVSVSGTGTH 92
           +NS LGL +A +  RRHPFSRSYG  LPSSL  ++     FS + PVSV GTGT+
Sbjct: 4   LNSCLGLFSA-AYFRRHPFSRSYGVNLPSSLTAILPMALGFSPHLPVSVCGTGTY 57


>tr|A5Z304|A5Z304_9FIRM Putative uncharacterized protein
           OS=Eubacterium ventriosum ATCC 27560 GN=EUBVEN_00035
           PE=4 SV=1
          Length = 76

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 27/41 (65%), Positives = 31/41 (75%)
 Frame = -2

Query: 217 VRRHPFSRSYGAILPSSLEKVVSRP*VFSTYPPVSVSGTGT 95
           +RRHP SRSYGAILPSSL  ++     FS +PPVSV GTGT
Sbjct: 9   LRRHPLSRSYGAILPSSLTMLLPSALGFSPHPPVSVYGTGT 49