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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947048
Clone id YMU02A01NGRL0014_J17
Library
Length 231
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_J17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCACAGATTAATTACTCATCCCATTCCGGTGAATAATGATTCTATATGGTTCACAAATTT
ATTTTGCTCATTAGTCATAAAAACAGTCATTTATTCAAAAAATGCTCAAAACCTCAGCAA
AAAAGTCAAAGGAATTTACAAAAAAAATTCCATAAAAAAGGAAAAAATAAAGAAAAAAGG
AAAAACTATCAAAGAGTGTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P26864
Definition sp|P26864|RT02_MARPO Ribosomal protein S2, mitochondrial OS=Marchantia polymorpha
Align length 36
Score (bit) 53.1
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947048|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_J17, 5'
         (201 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26864|RT02_MARPO Ribosomal protein S2, mitochondrial OS=Marc...    53   4e-07
sp|A5FZ67|RS2_ACICJ 30S ribosomal protein S2 OS=Acidiphilium cry...    30   2.9  
sp|Q924T2|RT02_MOUSE 28S ribosomal protein S2, mitochondrial OS=...    30   3.8  
sp|A6Q715|RS2_SULNB 30S ribosomal protein S2 OS=Sulfurovum sp. (...    30   3.8  
sp|Q0BSM5|RS2_GRABC 30S ribosomal protein S2 OS=Granulibacter be...    30   3.8  
sp|O13970|RT04_SCHPO 40S ribosomal protein mrp4, mitochondrial O...    29   6.4  
sp|Q5FUV7|RS2_GLUOX 30S ribosomal protein S2 OS=Gluconobacter ox...    29   6.4  
sp|A6Q585|RS2_NITSB 30S ribosomal protein S2 OS=Nitratiruptor sp...    29   8.4  

>sp|P26864|RT02_MARPO Ribosomal protein S2, mitochondrial
           OS=Marchantia polymorpha GN=RPS2 PE=3 SV=2
          Length = 237

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +2

Query: 2   HRLITHPIPVNNDSIWFTNLFCSLVIKTVIYSKNAQ 109
           H+LIT+P+PVN+DSI F  LFC+L+ KTVI SK +Q
Sbjct: 193 HKLITYPVPVNDDSIKFVYLFCNLITKTVILSKRSQ 228


>sp|A5FZ67|RS2_ACICJ 30S ribosomal protein S2 OS=Acidiphilium
           cryptum (strain JF-5) GN=rpsB PE=3 SV=1
          Length = 256

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 11  ITHPIPVNNDSIWFTNLFCSLVIKTVIYSKNAQ 109
           +T+PIP N+D+I    L+C LV   V+   +A+
Sbjct: 197 VTYPIPGNDDAIRAITLYCDLVANAVLDGISAE 229


>sp|Q924T2|RT02_MOUSE 28S ribosomal protein S2, mitochondrial OS=Mus
           musculus GN=Mrps2 PE=2 SV=1
          Length = 291

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   LITHPIPVNNDSIWFTNLFCSLVIKTVIYSK 100
           LIT+PIP N+DS     LFC L   T+  +K
Sbjct: 228 LITYPIPGNDDSPQAIQLFCKLFRTTINRAK 258


>sp|A6Q715|RS2_SULNB 30S ribosomal protein S2 OS=Sulfurovum sp.
           (strain NBC37-1) GN=rpsB PE=3 SV=1
          Length = 344

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 8   LITHPIPVNNDSIWFTNLFCSLVIKTVIYSKNA 106
           +I +PIP N+D+I   NLFC  +   +I  K A
Sbjct: 193 VIDYPIPGNDDAIRSINLFCKEMADAIIEGKAA 225


>sp|Q0BSM5|RS2_GRABC 30S ribosomal protein S2 OS=Granulibacter
           bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsB
           PE=3 SV=1
          Length = 258

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 11  ITHPIPVNNDSIWFTNLFCSLVIKTVIYSKNAQNLS 118
           +T+PIP N+D+I    ++C LV   V+   +A+ ++
Sbjct: 197 VTYPIPGNDDAIRAITMYCDLVASAVLDGISAEMIA 232


>sp|O13970|RT04_SCHPO 40S ribosomal protein mrp4, mitochondrial
           OS=Schizosaccharomyces pombe GN=mrp4 PE=2 SV=2
          Length = 263

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 5   RLITHPIPVNNDSIWFTNLFCSLV 76
           R++T+PIP N+DS+  T+L   L+
Sbjct: 216 RMVTYPIPANDDSLRCTDLIAGLL 239


>sp|Q5FUV7|RS2_GLUOX 30S ribosomal protein S2 OS=Gluconobacter
           oxydans GN=rpsB PE=3 SV=1
          Length = 265

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 11  ITHPIPVNNDSIWFTNLFCSLVIKTVIYSKNAQ 109
           +T+PIP N+D+I    L+C LV   V+   +A+
Sbjct: 197 VTYPIPGNDDAIRAITLYCDLVSGAVLDGISAE 229


>sp|A6Q585|RS2_NITSB 30S ribosomal protein S2 OS=Nitratiruptor sp.
           (strain SB155-2) GN=rpsB PE=3 SV=1
          Length = 267

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   LITHPIPVNNDSIWFTNLFCSLVIKTVIYSK 100
           LI +PIP N+D+I    LFC  + + +I  K
Sbjct: 193 LIDYPIPGNDDAIRSIQLFCKEMAEAIIEGK 223
tr_hit_id Q1XGC8
Definition tr|Q1XGC8|Q1XGC8_PHYPA Ribosomal protein S2 OS=Physcomitrella patens
Align length 38
Score (bit) 50.4
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947048|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_J17, 5'
         (201 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1XGC8|Q1XGC8_PHYPA Ribosomal protein S2 OS=Physcomitrella pa...    50   4e-05
tr|Q8HCP8|Q8HCP8_ORYSJ Ribosomal protein S2 OS=Oryza sativa subs...    37   0.64 
tr|Q7YAL1|Q7YAL1_CHAVU Ribosomal protein S2 OS=Chara vulgaris GN...    37   0.64 
tr|Q8M1D9|Q8M1D9_CHAGL Ribosomal protein S2 OS=Chaetosphaeridium...    36   0.84 
tr|Q5ZKC2|Q5ZKC2_CHICK Putative uncharacterized protein (Fragmen...    35   1.4  
tr|A7P1N4|A7P1N4_VITVI Chromosome chr19 scaffold_4, whole genome...    33   5.4  
tr|O21288|O21288_RECAM Ribosomal protein S2 OS=Reclinomonas amer...    33   5.4  

>tr|Q1XGC8|Q1XGC8_PHYPA Ribosomal protein S2 OS=Physcomitrella
           patens GN=rps2 PE=3 SV=1
          Length = 241

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = +2

Query: 5   RLITHPIPVNNDSIWFTNLFCSLVIKTVIYSKNAQNLS 118
           +LIT+PIPVN+DSI F  LFC+L+ KTVI S++A  LS
Sbjct: 194 KLITYPIPVNDDSIQFVYLFCNLITKTVILSQSAWPLS 231


>tr|Q8HCP8|Q8HCP8_ORYSJ Ribosomal protein S2 OS=Oryza sativa subsp.
           japonica GN=rps2 PE=4 SV=2
          Length = 483

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +2

Query: 2   HRLITHPIPVNNDSIWFTNLFCSLVIKTVI 91
           H+ IT+PIP N DSI F  LFC LV KT I
Sbjct: 237 HKRITYPIPAN-DSIQFVYLFCHLVTKTGI 265


>tr|Q7YAL1|Q7YAL1_CHAVU Ribosomal protein S2 OS=Chara vulgaris
           GN=rps2 PE=3 SV=1
          Length = 225

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +2

Query: 11  ITHPIPVNNDSIWFTNLFCSLVIKTVIYSK 100
           I +PIPVN+DS+ F  LFC L+ + V YS+
Sbjct: 194 IHYPIPVNDDSLEFIYLFCHLITQIVNYSR 223


>tr|Q8M1D9|Q8M1D9_CHAGL Ribosomal protein S2 OS=Chaetosphaeridium
           globosum GN=rps2 PE=3 SV=1
          Length = 191

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +2

Query: 2   HRLITHPIPVNNDSIWFTNLFCSLVIK 82
           H  I +PIPVN++SI F  LFC+L++K
Sbjct: 160 HLKIDYPIPVNHNSISFIYLFCNLIVK 186


>tr|Q5ZKC2|Q5ZKC2_CHICK Putative uncharacterized protein (Fragment)
           OS=Gallus gallus GN=RCJMB04_11n4 PE=2 SV=1
          Length = 373

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +2

Query: 8   LITHPIPVNNDSIWFTNLFCSLVIKTVIYSKN 103
           LIT+PIP N+DS     L+C L   T+I++KN
Sbjct: 207 LITYPIPGNDDSPTAMELYCKLFKMTIIHAKN 238


>tr|A7P1N4|A7P1N4_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027688001
           PE=3 SV=1
          Length = 221

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 11  ITHPIPVNNDSIWFTNLFCSLVIKTVIYSKNAQNL 115
           I +PIP   DS+ F  LFC+L+ KT +Y +    L
Sbjct: 167 IAYPIPAK-DSVQFVYLFCNLITKTFLYEQKKMGL 200


>tr|O21288|O21288_RECAM Ribosomal protein S2 OS=Reclinomonas
           americana GN=rps2 PE=4 SV=1
          Length = 212

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 11  ITHPIPVNNDSIWFTNLFCSLVIKTVI 91
           IT+PIP N+DSI   NL+C L+   ++
Sbjct: 178 ITYPIPGNDDSILAVNLYCQLISNAIL 204