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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947060
Clone id YMU02A01NGRL0014_K12
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_K12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TAGCAGTAGCAGTAGTGAAAGTGGCTCTAGCTGCAGCAGCCATGGAAAGAATAGCTTATC
TAATCTTGGCAAGGAGTTTGAGCACCTCGTCGCCACGAACACATTGCTTGAATTTGAGAA
GGAATATGTGGCGGCACCGATGGAAGGCAAGATCACAAGGGACATCATGGAAACAGTGAT
GCATGCAGGCCCCGATGAAAATACTTCTGGCAAAGAGACATTTCTTGACATCAATGAGAT
ACTAAGGGATGCGACGAACATGAGCGAAGGCGATTTCATCTTTTCTGAGAACCCTGATTT
TGTGATTGTGTAATTACAACTGTGGAACAGAAGGATGAGAAGTCTACTGACACAACAAGA
TATCTCTGGAGAGGAGAAAATTGAGAAGGTTTGAGTTCTCAACAATGGGCTATGAGGCAA
TAATGGGAAGGCACCGATTGTGGGCTTGTATAGGTTTTGACCCACCTGTGCAACCGTCAG
CGCCTTTGTGCACTGGTGCAATGTCCTGTGGTTACCTTGTTTGGAATCTTAATTGTTCTC
ATGTATGTGCTATATTCCTGCGCATCTCATTAAGTGTTACAAGGTTTTGGTTGTAAATGA
AATTACCTTTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id Q03DS2
Definition sp|Q03DS2|ARCA_PEDPA Arginine deiminase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Align length 85
Score (bit) 34.7
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947060|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_K12, 5'
         (615 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03DS2|ARCA_PEDPA Arginine deiminase OS=Pediococcus pentosace...    35   0.40 
sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282...    31   4.4  
sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS...    31   5.8  
sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protei...    30   9.8  
sp|A6UUY8|RNZ_META3 Ribonuclease Z OS=Methanococcus aeolicus (st...    30   9.9  
sp|Q9QSP0|L_ABLVB Large structural protein OS=Australian bat lys...    30   9.9  

>sp|Q03DS2|ARCA_PEDPA Arginine deiminase OS=Pediococcus pentosaceus
           (strain ATCC 25745 / 183-1w) GN=arcA PE=3 SV=1
          Length = 407

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +2

Query: 83  HLVATNTLLEFEKEYVAAPM---EGKITRDIMETVMHAGPDENTSGKETFLDINEILRDA 253
           HL    T++ +E+  V   +   +GK+       V+H G D   +  E   DI E+L+ A
Sbjct: 268 HLDTVFTMINYEQFTVHPAILTGDGKVDN----WVLHPGKDGEIT-MEHHTDIKEVLKKA 322

Query: 254 TNMSEGDFIFSENPDFVIV*LQLWN 328
            N SE D I + N D ++   + WN
Sbjct: 323 LNKSEIDLIPTGNGDPIVAPREQWN 347


>sp|Q54SY5|Y5150_DICDI Putative uncharacterized protein DDB_G0282129
           OS=Dictyostelium discoideum GN=DDB_G0282129 PE=4 SV=1
          Length = 765

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 461 VKTYTSPQSVPSHYCLIAHC*ELKPSQ-FSPLQRYLVVSVDFSSFCSTVVITQSQNQGSQ 285
           + +Y SPQS P     +       PS   SP+Q   +V    SSF S   I Q Q Q  Q
Sbjct: 322 IDSYDSPQSSPPRQSSLLISTSSPPSPPLSPIQPTNIVQSSSSSFSSPTYIQQQQQQQQQ 381

Query: 284 KR 279
           ++
Sbjct: 382 QQ 383


>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment)
           OS=Gallus gallus GN=BLM PE=2 SV=1
          Length = 1142

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 366 LERRKLRR---FEFSTMGYEAIMGRHRLWACIGFDPPVQPSAPLCTG 497
           L++R+LRR    +   +   ++ G     AC+  DP  +P  PLC+G
Sbjct: 108 LQQRELRRKLLADSGALNTNSVNGPRNWKACVQQDPSSRPGTPLCSG 154


>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein
           24 OS=Saccharomyces cerevisiae GN=VPS24 PE=1 SV=1
          Length = 224

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +2

Query: 98  NTLLEFEKEYVAAPMEGKITRDIMETVMHAGPDENTSGKETFLDINEILRDATN 259
           NT++E EKE + + +  ++  D ME+V   G + + +  E   ++N+I+   TN
Sbjct: 126 NTMIELEKELMKSGIISEMVDDTMESVGDVGEEMDEAVDE---EVNKIVEQYTN 176


>sp|A6UUY8|RNZ_META3 Ribonuclease Z OS=Methanococcus aeolicus
           (strain Nankai-3 / ATCC BAA-1280) GN=rnz PE=3 SV=1
          Length = 322

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 399 RTQTFSIFSSPEISCCVSRLLILLFHSCNYTITKSGFSEK 280
           RT+  +I+  PEI   +  +L + +HS N+ IT    + K
Sbjct: 81  RTEPINIYGPPEIKNTIENILKIGYHSINFKITVHEINSK 120


>sp|Q9QSP0|L_ABLVB Large structural protein OS=Australian bat
            lyssavirus (isolate Bat/AUS/1996) GN=L PE=3 SV=2
          Length = 2128

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
 Frame = -1

Query: 489  TKALTVAQVGQNLYKPTIG--------AFPLLPHSPLLRTQTFSIFSS--PEISCCVSRL 340
            T ALTVAQ  Q+L KP  G         F  L  SP+L+ + + I S+   +    +SR+
Sbjct: 833  TNALTVAQHSQSLIKPMRGFLLMAVQAVFHYLLFSPILKGRVYKILSAEGDDFLLAMSRI 892

Query: 339  LIL 331
            + L
Sbjct: 893  VYL 895
tr_hit_id A9NMZ4
Definition tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 84
Score (bit) 55.1
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947060|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_K12, 5'
         (615 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea...    55   3e-06
tr|A9TG33|A9TG33_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A7KQG6|A7KQG6_GYRTH NADH dehydrogenase subunit 5 OS=Gyrodacty...    40   0.14 
tr|A2D6F3|A2D6F3_GYRSA NADH dehydrogenase subunit 5 OS=Gyrodacty...    37   0.93 
tr|Q55GV7|Q55GV7_DICDI Putative uncharacterized protein OS=Dicty...    35   3.5  
tr|A1DS21|A1DS21_PEDPE Arginine deiminase (Fragment) OS=Pediococ...    35   4.5  
tr|B3T0G8|B3T0G8_9ZZZZ Putative uncharacterized protein OS=uncul...    35   4.6  
tr|A9ILE1|A9ILE1_BORPD Putative membrane protein (TRAP-type tran...    35   4.6  
tr|B5SR79|B5SR79_9EUTH Apolipoprotein B (Fragment) OS=Suncus mon...    35   4.6  
tr|B5SR78|B5SR78_SUNMU Apolipoprotein B (Fragment) OS=Suncus mur...    35   4.6  
tr|B5SR53|B5SR53_SUNMU Apolipoprotein B (Fragment) OS=Suncus mur...    35   4.6  
tr|A9CD73|A9CD73_SUNMU ApoB (Fragment) OS=Suncus murinus GN=ApoB...    35   4.6  
tr|A9CD29|A9CD29_SUNMU ApoB (Fragment) OS=Suncus murinus GN=ApoB...    35   4.6  
tr|A9CD25|A9CD25_SUNMU ApoB (Fragment) OS=Suncus murinus GN=ApoB...    35   4.6  
tr|Q9UD04|Q9UD04_HUMAN GHDTA=GROWTH hormone gene-derived transcr...    34   5.9  
tr|Q9B6Q8|Q9B6Q8_9HEMI ATP synthase subunit a OS=Drepanosiphum o...    34   6.0  
tr|A6DLK7|A6DLK7_9BACT Putative uncharacterized protein OS=Lenti...    34   7.7  
tr|Q32Z12|Q32Z12_9NOST Polyketide synthase ketosynthase domain (...    34   7.8  
tr|Q32Z11|Q32Z11_9NOST Polyketide synthase ketosynthase domain (...    34   7.8  
tr|B6P4J2|B6P4J2_BRAFL Putative uncharacterized protein (Fragmen...    34   7.8  

>tr|A9NMZ4|A9NMZ4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 164

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
 Frame = +2

Query: 65  LGKEFEHLVATNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPDE-NTSGK-ETFLDINE 238
           +GKEFE +VA  TL E EKEY    M+G ITRD  + VM+ GP      GK ET +D+  
Sbjct: 85  IGKEFETMVARATLSEREKEYNTVEMKGNITRDDFKEVMNIGPSRFAEEGKGETVIDLQA 144

Query: 239 ILRDATNMSEGDFIFSENPDFVIV 310
           +L +  N    +F F +NP+ V +
Sbjct: 145 MLNELKN---DNFAF-DNPEDVFI 164


>tr|A9TG33|A9TG33_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169878 PE=4 SV=1
          Length = 575

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 62  NLGKEFEHLVATNTLLEFEKEYVAAPMEGKITRDIMETVMHAGPD 196
           N+G EFE++V+  T+ EFEKEY    M+G ITRD++  VM+  P+
Sbjct: 93  NVGAEFENMVSRATMEEFEKEYDTGEMQGTITRDVVAEVMNEMPE 137


>tr|A7KQG6|A7KQG6_GYRTH NADH dehydrogenase subunit 5 OS=Gyrodactylus
           thymalli GN=ND5 PE=4 SV=1
          Length = 516

 Score = 39.7 bits (91), Expect = 0.14
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
 Frame = -1

Query: 378 FSSPEISCCVSRLLILLFHSCNYTITKSGFSEKMKSPSLMFVASLSISLMSRNVSLP--- 208
           FSS  I+CCV   L+++  S  + +T S   E M++P+ +     S +L++  V L    
Sbjct: 155 FSSVSIACCVFICLLIISKSAVFPLT-SWLLEAMRAPTPVSSLVHSSTLVAAGVVLVCRY 213

Query: 207 EVF-SSGPACITVSMMSLVILPSIGAATYSFSNSSNVFVATRCSN 76
           EV+  +GP    + ++ LV +     A + +S++  V   + C+N
Sbjct: 214 EVYLLNGPYSYALLVLCLVTISMSATAAFFYSDTKKVIALSTCNN 258


>tr|A2D6F3|A2D6F3_GYRSA NADH dehydrogenase subunit 5 OS=Gyrodactylus
           salaris GN=nad5 PE=4 SV=1
          Length = 516

 Score = 37.0 bits (84), Expect = 0.93
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
 Frame = -1

Query: 378 FSSPEISCCVSRLLILLFHSCNYTITKSGFSEKMKSPSLMFVASLSISLMSRNVSL---- 211
           FSS  I+CCV   L+++  S  + +T S   E M++P+ +     S +L++  + L    
Sbjct: 155 FSSVSIACCVFICLLIISKSAVFPLT-SWLLEAMRAPTPVSSLVHSSTLVAAGIVLVCRY 213

Query: 210 PEVFSSGPACITVSMMSLVILPSIGAATYSFSNSSNVFVATRCSN 76
                +GP    + ++ L+ +     A + +S++  V   + C+N
Sbjct: 214 ETYLLNGPYSYALLVLCLLTISMSATAAFFYSDTKKVVALSTCNN 258


>tr|Q55GV7|Q55GV7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0189323 PE=4 SV=1
          Length = 200

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
 Frame = +2

Query: 98  NTLLEFEKEYVAAPMEGKIT-----RDIMETVMHAGPDENTSGKETFLDINEILRDATNM 262
           NT+LE E+++       K+      + ++ TV  +  D+N    +    +N++L+ +TN 
Sbjct: 49  NTILE-EQDFKIPQTPKKVEDKQYLKSMISTVFESDKDDNEKANQL---MNQLLKSSTNF 104

Query: 263 SEGDFIFSENPD 298
           +E D +F+EN D
Sbjct: 105 NENDTLFNENDD 116


>tr|A1DS21|A1DS21_PEDPE Arginine deiminase (Fragment) OS=Pediococcus
           pentosaceus GN=ADI PE=4 SV=1
          Length = 89

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +2

Query: 83  HLVATNTLLEFEKEYVAAPM---EGKITRDIMETVMHAGPDENTSGKETFLDINEILRDA 253
           HL    T++ +E+  V   +   +GK+       V+H G D   +  E   DI E+L+ A
Sbjct: 5   HLDTVFTMINYEQFTVHPAILTGDGKVDN----WVLHPGKDGEIT-MEHHTDIKEVLKKA 59

Query: 254 TNMSEGDFIFSENPDFVIV*LQLWN 328
            N SE D I + N D ++   + WN
Sbjct: 60  LNKSEIDLIPTGNGDPIVAPREQWN 84


>tr|B3T0G8|B3T0G8_9ZZZZ Putative uncharacterized protein
           OS=uncultured marine microorganism HF4000_005I08
           GN=ALOHA_HF4000005I08ctg1g4 PE=4 SV=1
          Length = 139

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 26/103 (25%), Positives = 47/103 (45%)
 Frame = -1

Query: 375 SSPEISCCVSRLLILLFHSCNYTITKSGFSEKMKSPSLMFVASLSISLMSRNVSLPEVFS 196
           +SP  +C V+     +  S   +I  +     + SP+     ++S S  +R+ S   VF+
Sbjct: 7   TSPAFACAVAMSASAVARSSASSIVFALARASLTSPAFACAVAMSASASARSSSSSIVFA 66

Query: 195 SGPACITVSMMSLVILPSIGAATYSFSNSSNVFVATRCSNSLP 67
              A +T    +  +  S+ A+  S S+SS VF   R + + P
Sbjct: 67  VARAALTSPAFACAVAMSVSASARS-SSSSIVFAVARAALTSP 108


>tr|A9ILE1|A9ILE1_BORPD Putative membrane protein (TRAP-type
           transport system, large permease component)
           OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
           CCUG 43448) GN=Bpet2230 PE=4 SV=1
          Length = 427

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 336 ILLFHSCNYTITKSGFSEKMKSPSLMFVASLSISLMSRNVSLPEVFS--SGPACITVSMM 163
           I LF      + +SGF+E+M S   ++++ L   LM  N+    +FS  SG +  T + +
Sbjct: 59  IPLFIMLGEVLLRSGFAERMYSAMSLWLSWLPGGLMHANIGASTLFSATSGSSVATAATV 118

Query: 162 SLVILPSIGAATYS 121
             V LP I    Y+
Sbjct: 119 GTVALPQIKKYGYN 132


>tr|B5SR79|B5SR79_9EUTH Apolipoprotein B (Fragment) OS=Suncus
           montanus PE=4 SV=1
          Length = 283

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 315 NYTITKSGFSEKMKSPSLMFVA--SLSISLMSRNVSLPEVFSSGPACITVSMMSLVILPS 142
           N+TI  SGF     + +L F+   +L +   S  +SLPE          +SM   + +P+
Sbjct: 96  NFTILDSGFFVPSYTLALPFLELPALQVPKYSLELSLPEFE-------VLSMPRNIFIPA 148

Query: 141 IGAATYSFSNSSNV 100
           +G  TY FS  SNV
Sbjct: 149 LGNITYDFSFKSNV 162


>tr|B5SR78|B5SR78_SUNMU Apolipoprotein B (Fragment) OS=Suncus
           murinus PE=4 SV=1
          Length = 282

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = -1

Query: 315 NYTITKSGFSEKMKSPSLMFVA--SLSISLMSRNVSLPEVFSSGPACITVSMMSLVILPS 142
           N+TI  SGF     + +L F+   +L +   S  +SLPE          +SM   + +P+
Sbjct: 95  NFTILDSGFFVPSYTLALPFLELPALQVPKYSLELSLPEFE-------VLSMPRNIFIPA 147

Query: 141 IGAATYSFSNSSNV 100
           +G  TY FS  SNV
Sbjct: 148 LGNITYDFSFKSNV 161