DK947070
Clone id YMU02A01NGRL0014_L02
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_L02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGAAGCAGTGGTATCAACGCAG
AGTGGCCATTACGGCCGGGAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGAA
GCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGAAGCAGTGGTATCAACGCAGAGT
GCCCATTACGGCCGGGGGTGGTTATTTTTATACACACTGTATGTCTGGCTCATTTCTTGT
CAATCCAGAGTCAGATCCCGAGCTCCTGCACCTCAGCCCTCTCGCAAGTTTTCCGCGTAT
TTCCATGGCCGCCGCTGAAGCTTCCCCGGCTCCTCCGCCCGCAGAGAAGAAGGCAAAGAA
GGCCGCTCCCAAGAAGGCCAAGTCTGCTACGCCAAAGAGTAAATCGGAACCTGCTCACCC
CAGTTATCTTCAGATGAGTTCGGAGGCTATTGCCGCACTTAAGGAGAGGACTGGTTCCAG
TCAGTATGCCATTGCCAAGTACATAGATGCCAAGTATAAGGGTGTTCTTCCTCCCAATTT
CAAGAAGCTTTTGACAGTACAGCTGAGAAATTTGGTAAAACAGAACAAACTAGTGAAGGT
CAAGGCT
■■Homology search results ■■ -
sp_hit_id P23444
Definition sp|P23444|H1_MAIZE Histone H1 OS=Zea mays
Align length 51
Score (bit) 70.5
E-value 3.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947070|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_L02, 5'
(411 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P23444|H1_MAIZE Histone H1 OS=Zea mays PE=2 SV=2 70 3e-12
sp|P27806|H1_WHEAT Histone H1 OS=Triticum aestivum PE=2 SV=2 66 6e-11
sp|P26569|H12_ARATH Histone H1.2 OS=Arabidopsis thaliana GN=At2g... 64 3e-10
sp|P40267|H1_SOLPN Histone H1 OS=Solanum pennellii PE=2 SV=1 62 7e-10
sp|P37218|H1_SOLLC Histone H1 OS=Solanum lycopersicum PE=3 SV=1 62 9e-10
sp|Q9M5W4|H1_EUPES Histone H1 OS=Euphorbia esula PE=2 SV=1 62 1e-09
sp|P26568|H11_ARATH Histone H1.1 OS=Arabidopsis thaliana GN=At1g... 60 3e-09
sp|P08283|H1_PEA Histone H1 OS=Pisum sativum PE=2 SV=1 59 8e-09
sp|P54671|H1_DICDI Histone H1 OS=Dictyostelium discoideum GN=H1 ... 50 5e-06
sp|Q08865|H12_VOLCA Histone H1-II OS=Volvox carteri GN=H1-II PE=... 49 1e-05
sp|Q08864|H11_VOLCA Histone H1-I OS=Volvox carteri GN=H1-I PE=2 ... 45 1e-04
sp|O16277|H16_CAEEL Putative histone H1.6 OS=Caenorhabditis eleg... 44 3e-04
sp|P15796|H12_CAEEL Histone H1.2 OS=Caenorhabditis elegans GN=hi... 44 3e-04
sp|Q9UV33|H1_ASCIM Histone H1 OS=Ascobolus immersus PE=3 SV=1 43 6e-04
sp|O01833|H15_CAEEL Histone H1.5 OS=Caenorhabditis elegans GN=hi... 42 0.001
sp|P06144|H1_LYTPI Late histone H1 OS=Lytechinus pictus PE=3 SV=1 41 0.002
sp|P82898|H1A_OLILU Histone H1A (Fragment) OS=Olisthodiscus lute... 40 0.003
sp|O17536|H14_CAEEL Histone H1.4 OS=Caenorhabditis elegans GN=hi... 40 0.003
sp|P10771|H11_CAEEL Histone H1.1 OS=Caenorhabditis elegans GN=hi... 40 0.003
sp|Q8J0U2|H1_NEUCR Histone H1 OS=Neurospora crassa GN=hh1 PE=3 SV=1 40 0.004
sp|P02257|H1_ECHCR Histone H1, gonadal (Fragment) OS=Echinolampa... 40 0.004
sp|Q19743|H13_CAEEL Histone H1.3 OS=Caenorhabditis elegans GN=hi... 40 0.004
sp|P15869|H1B_STRPU Histone H1-beta, late embryonic OS=Strongylo... 39 0.008
sp|P02256|H1_PARAN Histone H1, gonadal OS=Parechinus angulosus P... 39 0.011
sp|P02259|H5_CHICK Histone H5 OS=Gallus gallus PE=1 SV=2 38 0.014
sp|P17268|H1_DROHY Histone H1 OS=Drosophila hydei GN=His1 PE=3 SV=2 38 0.014
sp|P07796|H1G_STRPU Histone H1-gamma, late OS=Strongylocentrotus... 38 0.014
sp|P15870|H1D_STRPU Histone H1-delta OS=Strongylocentrotus purpu... 38 0.014
sp|P06513|H5_CAIMO Histone H5 OS=Cairina moschata PE=2 SV=2 38 0.018
sp|P02255|H1_DROME Histone H1 OS=Drosophila melanogaster GN=His1... 38 0.018

>sp|P23444|H1_MAIZE Histone H1 OS=Zea mays PE=2 SV=2
Length = 246

Score = 70.5 bits (171), Expect = 3e-12
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
H Y +M SEAI +LKERTGSS YAIAK+++ K+K LPPNF+KLL VQL+
Sbjct: 50 HLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLK 100


>sp|P27806|H1_WHEAT Histone H1 OS=Triticum aestivum PE=2 SV=2
Length = 238

Score = 65.9 bits (159), Expect = 6e-11
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HPSY +M SEAIAALKER+GSS AI K+I+ K+K LP NF+K+L Q++
Sbjct: 55 HPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIK 105


>sp|P26569|H12_ARATH Histone H1.2 OS=Arabidopsis thaliana
GN=At2g30620 PE=2 SV=1
Length = 273

Score = 63.5 bits (153), Expect = 3e-10
Identities = 31/51 (60%), Positives = 39/51 (76%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+Y +M +AI LKERTGSSQYAI K+I+ K+K LPP F+KLL V L+
Sbjct: 62 HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLK 111


>sp|P40267|H1_SOLPN Histone H1 OS=Solanum pennellii PE=2 SV=1
Length = 202

Score = 62.4 bits (150), Expect = 7e-10
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP Y QM EA+ AL E+ GSS YA+AKY++ K+K LP NF+K+L +QL+
Sbjct: 49 HPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLK 99


>sp|P37218|H1_SOLLC Histone H1 OS=Solanum lycopersicum PE=3 SV=1
Length = 287

Score = 62.0 bits (149), Expect = 9e-10
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP Y +M +AI LKERTGSSQ+AI K+I+ K K LP NFKKLL QL+
Sbjct: 56 HPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKS-LPSNFKKLLLTQLK 105


>sp|Q9M5W4|H1_EUPES Histone H1 OS=Euphorbia esula PE=2 SV=1
Length = 229

Score = 61.6 bits (148), Expect = 1e-09
Identities = 30/51 (58%), Positives = 40/51 (78%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HPS+ +M S+AI+ LKERTGSSQYAI K+++ K+K LP NF+KLL L+
Sbjct: 51 HPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLK 100


>sp|P26568|H11_ARATH Histone H1.1 OS=Arabidopsis thaliana
GN=At1g06760 PE=2 SV=1
Length = 274

Score = 60.1 bits (144), Expect = 3e-09
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+Y +M +AI LKERTGSSQYAI K+I+ K K LPP F+KLL + L+
Sbjct: 62 HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLK 111


>sp|P08283|H1_PEA Histone H1 OS=Pisum sativum PE=2 SV=1
Length = 265

Score = 58.9 bits (141), Expect = 8e-09
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+Y +M +AI +LKE+ GSSQYAIAK+I+ K K LP NFKKLL L+
Sbjct: 62 HPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLK 111


>sp|P54671|H1_DICDI Histone H1 OS=Dictyostelium discoideum GN=H1
PE=1 SV=3
Length = 180

Score = 49.7 bits (117), Expect = 5e-06
Identities = 28/51 (54%), Positives = 33/51 (64%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+Y M S AIA K+RTGSSQ AI KYI+A Y V P FK L + L+
Sbjct: 24 HPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANY-NVAPDTFKTQLKLALK 73


>sp|Q08865|H12_VOLCA Histone H1-II OS=Volvox carteri GN=H1-II PE=2
SV=3
Length = 241

Score = 48.5 bits (114), Expect = 1e-05
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKY-KGVLPPNFKKLLTVQLR 372
HP Y+QM ++AI +LKER GSS A+ K+I+AKY K + F K L++ L+
Sbjct: 25 HPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALK 76


tr_hit_id A9RTA3
Definition tr|A9RTA3|A9RTA3_PHYPA Histone H1 linker OS=Physcomitrella patens subsp. patens
Align length 51
Score (bit) 84.0
E-value 4.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947070|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_L02, 5'
(411 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RTA3|A9RTA3_PHYPA Histone H1 linker OS=Physcomitrella paten... 84 4e-15
tr|A9SF83|A9SF83_PHYPA Predicted protein OS=Physcomitrella paten... 81 2e-14
tr|Q94EU7|Q94EU7_FRILI Histone-like protein (Fragment) OS=Fritil... 79 1e-13
tr|Q94EU5|Q94EU5_FRILI Histone-like protein (Fragment) OS=Fritil... 79 1e-13
tr|Q94EU3|Q94EU3_FRILI Histone-like protein (Fragment) OS=Fritil... 79 1e-13
tr|Q94EU2|Q94EU2_FRILI Histone-like protein (Fragment) OS=Fritil... 79 1e-13
tr|Q93WC3|Q93WC3_FRILI Histone-like protein (Fragment) OS=Fritil... 79 1e-13
tr|O22648|O22648_FRIAG Histone-like protein OS=Fritillaria agres... 77 3e-13
tr|A9RX26|A9RX26_PHYPA Histone H1 linker OS=Physcomitrella paten... 77 3e-13
tr|Q94EU8|Q94EU8_FRILI Histone-like protein (Fragment) OS=Fritil... 76 7e-13
tr|A7Q0I8|A7Q0I8_VITVI Chromosome chr7 scaffold_42, whole genome... 75 1e-12
tr|A5BS12|A5BS12_VITVI Putative uncharacterized protein OS=Vitis... 75 1e-12
tr|Q9ST40|Q9ST40_LILLO Variant of histone H1 OS=Lilium longiflor... 75 2e-12
tr|B4FD93|B4FD93_MAIZE Putative uncharacterized protein OS=Zea m... 74 4e-12
tr|A9RDT0|A9RDT0_PHYPA Histone H1 linker OS=Physcomitrella paten... 74 4e-12
tr|B6UHB6|B6UHB6_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 74 5e-12
tr|B6U6R6|B6U6R6_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 74 5e-12
tr|B6T4M4|B6T4M4_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 74 5e-12
tr|B6T2X7|B6T2X7_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 74 5e-12
tr|B6SYW3|B6SYW3_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 74 5e-12
tr|Q676W4|Q676W4_HYAOR Histone H1 (Fragment) OS=Hyacinthus orien... 73 6e-12
tr|A9NV40|A9NV40_PICSI Putative uncharacterized protein OS=Picea... 73 8e-12
tr|B6TNP4|B6TNP4_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 72 1e-11
tr|B6TGH8|B6TGH8_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 72 1e-11
tr|B6TC95|B6TC95_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 72 1e-11
tr|Q9XHL9|Q9XHL9_WHEAT Histone H1 WH1B.1 OS=Triticum aestivum PE... 72 1e-11
tr|Q1XG59|Q1XG59_CRYJA Putative histone H1 OS=Cryptomeria japoni... 72 1e-11
tr|Q84L42|Q84L42_PINPS Putative histone H1 OS=Pinus pinaster GN=... 71 2e-11
tr|A9NK58|A9NK58_PICSI Putative uncharacterized protein OS=Picea... 70 5e-11
tr|A7PUN4|A7PUN4_VITVI Chromosome chr7 scaffold_31, whole genome... 69 9e-11

>tr|A9RTA3|A9RTA3_PHYPA Histone H1 linker OS=Physcomitrella patens
subsp. patens GN=HON1501 PE=3 SV=1
Length = 285

Score = 84.0 bits (206), Expect = 4e-15
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+YL M++EAIAALKERTGSSQYAIAKY++ KYK LPPNFKK+LT QLR
Sbjct: 75 HPTYLLMATEAIAALKERTGSSQYAIAKYLEDKYKTGLPPNFKKMLTTQLR 125


>tr|A9SF83|A9SF83_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_232290 PE=3 SV=1
Length = 292

Score = 81.3 bits (199), Expect = 2e-14
Identities = 40/51 (78%), Positives = 43/51 (84%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HPSYL M EAI ALKERTGSSQYAIAKY++ KYK LPPNFKK LT+QLR
Sbjct: 60 HPSYLLMVVEAIGALKERTGSSQYAIAKYLEDKYKTGLPPNFKKTLTIQLR 110


>tr|Q94EU7|Q94EU7_FRILI Histone-like protein (Fragment)
OS=Fritillaria liliacea PE=3 SV=1
Length = 214

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+YL+M SEAIA+LKERTGSSQYAIAK+++ K+K LP NFKKLL VQLR
Sbjct: 40 HPTYLEMISEAIASLKERTGSSQYAIAKFVEDKHKSHLPANFKKLLLVQLR 90


>tr|Q94EU5|Q94EU5_FRILI Histone-like protein (Fragment)
OS=Fritillaria liliacea PE=3 SV=1
Length = 211

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+YL+M SEAIA+LKERTGSSQYAIAK+++ K+K LP NFKKLL VQLR
Sbjct: 37 HPTYLEMISEAIASLKERTGSSQYAIAKFVEDKHKSHLPANFKKLLLVQLR 87


>tr|Q94EU3|Q94EU3_FRILI Histone-like protein (Fragment)
OS=Fritillaria liliacea PE=3 SV=1
Length = 199

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+YL+M SEAIA+LKERTGSSQYAIAK+++ K+K LP NFKKLL VQLR
Sbjct: 37 HPTYLEMISEAIASLKERTGSSQYAIAKFVEDKHKSHLPANFKKLLLVQLR 87


>tr|Q94EU2|Q94EU2_FRILI Histone-like protein (Fragment)
OS=Fritillaria liliacea PE=3 SV=1
Length = 211

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+YL+M SEAIA+LKERTGSSQYAIAK+++ K+K LP NFKKLL VQLR
Sbjct: 37 HPTYLEMISEAIASLKERTGSSQYAIAKFVEDKHKSHLPANFKKLLLVQLR 87


>tr|Q93WC3|Q93WC3_FRILI Histone-like protein (Fragment)
OS=Fritillaria liliacea PE=3 SV=1
Length = 214

Score = 79.0 bits (193), Expect = 1e-13
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+YL+M SEAIA+LKERTGSSQYAIAK+++ K+K LP NFKKLL VQLR
Sbjct: 40 HPTYLEMISEAIASLKERTGSSQYAIAKFVEDKHKSHLPANFKKLLLVQLR 90


>tr|O22648|O22648_FRIAG Histone-like protein OS=Fritillaria agrestis
PE=2 SV=1
Length = 236

Score = 77.4 bits (189), Expect = 3e-13
Identities = 37/51 (72%), Positives = 45/51 (88%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+YL+M SEAIA+LKERTGSSQYAIAK+++ K+K LP NFKKLL VQL+
Sbjct: 49 HPTYLEMISEAIASLKERTGSSQYAIAKFVEDKHKSHLPANFKKLLLVQLQ 99


>tr|A9RX26|A9RX26_PHYPA Histone H1 linker OS=Physcomitrella patens
subsp. patens GN=HON1503 PE=3 SV=1
Length = 265

Score = 77.4 bits (189), Expect = 3e-13
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+Y+ M EAI ALKERTGSSQYAIAKY++ KYK L PNFKK+LT+QLR
Sbjct: 71 HPTYMLMVVEAIGALKERTGSSQYAIAKYLEDKYKTGLAPNFKKMLTIQLR 121


>tr|Q94EU8|Q94EU8_FRILI Histone-like protein (Fragment)
OS=Fritillaria liliacea PE=3 SV=1
Length = 214

Score = 76.3 bits (186), Expect = 7e-13
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = +1

Query: 220 HPSYLQMSSEAIAALKERTGSSQYAIAKYIDAKYKGVLPPNFKKLLTVQLR 372
HP+YL+M S AIA+LKERTGSSQYAIAK+++ K+K LP NFKKLL VQLR
Sbjct: 40 HPTYLEMISGAIASLKERTGSSQYAIAKFVEDKHKSHLPANFKKLLLVQLR 90