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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947072
Clone id YMU02A01NGRL0014_L04
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_L04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CGGAACGAGGCCGCCCTTGCAGAGACAGATCCCAGGAAGAAGAGGAACAAGTGCCCCACC
ATCTGCGTGCAACAGCCCACGGCTTCCTGCTGCTACAGCTATGATAGAGGGAAGGTGCCA
CGCCCAAGCGCTTTGTCTGCTGTGATACTTCTTGTTAACATTTCCTGGTGCCATCTGGCC
CATCCTTGTAATCTCTATTTATAATTGCAAATGTATCTCCGTGTCTGTAACATGCTTCGT
TCCTGGCAGTGAGAGAACCTTTGTCTTGATGAGGTCCTGTTTCTTGTCCTGTGACTGGCT
ATCGGAGGCTGCATTTTGTGAGAACATTCTAGATAGCACGAAAGATGAAGGGCTGATGTA
TTGCGATCTTACTAACGTGACAATTCTGATGTGACAATTCTGATGGAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id P27811
Definition sp|P27811|KLRBA_MOUSE Killer cell lectin-like receptor subfamily B member 1A OS=Mus musculus
Align length 145
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947072|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_L04, 5'
         (406 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27811|KLRBA_MOUSE Killer cell lectin-like receptor subfamily...    35   0.15 
sp|Q5U2P1|CNNM2_RAT Metal transporter CNNM2 OS=Rattus norvegicus...    31   2.2  
sp|Q9H8M5|CNNM2_HUMAN Metal transporter CNNM2 OS=Homo sapiens GN...    30   2.8  
sp|Q5TCY1|TTBK1_HUMAN Tau-tubulin kinase 1 OS=Homo sapiens GN=TT...    30   3.7  
sp|Q5RDX4|ATAD2_PONAB ATPase family AAA domain-containing protei...    30   3.7  
sp|Q8CDM1|ATAD2_MOUSE ATPase family AAA domain-containing protei...    30   3.7  
sp|Q6PL18|ATAD2_HUMAN ATPase family AAA domain-containing protei...    30   3.7  
sp|Q9QYC7|VKGC_MOUSE Vitamin K-dependent gamma-carboxylase OS=Mu...    30   4.8  
sp|Q6RH51|TAUZ_PARPN UPF0324 membrane protein tauZ OS=Paracoccus...    29   6.3  
sp|Q1DHE1|HIR1_COCIM Protein HIR1 OS=Coccidioides immitis GN=HIR...    29   6.3  
sp|Q0CKU4|ATG26_ASPTN Sterol 3-beta-glucosyltransferase OS=Asper...    29   6.3  
sp|Q55FT9|ABIA_DICDI Abl interactor homolog OS=Dictyostelium dis...    29   6.3  
sp|Q6S5L9|SHC4_MOUSE SHC-transforming protein 4 OS=Mus musculus ...    29   8.2  

>sp|P27811|KLRBA_MOUSE Killer cell lectin-like receptor subfamily B
           member 1A OS=Mus musculus GN=Klrb1a PE=2 SV=2
          Length = 227

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
 Frame = +2

Query: 2   GTRPPLQRQIPGRRGTSAPPSACNSPRLPAATAMIEGRCHAQALCLL*YFLLTFPGAIWP 181
           G +PP           S PP AC  P           R H  AL       L+  G I  
Sbjct: 9   GLKPPRTPGAWHESPPSLPPDACRCP-----------RSHRLAL------KLSCAGLI-- 49

Query: 182 ILVISIYNCKCISVSVTCFVPGSERTFVLMR---------SCFLSC--DWLSEAAFCENI 328
           +LV+++     + V V    P  E+ +VL++         S  L C  DWLS    C ++
Sbjct: 50  LLVVTLIGMS-VLVRVLIQKPSIEKCYVLIQENLNKTTDCSAKLECPQDWLSHRDKCFHV 108

Query: 329 --LDSTKDEGLMYCDLTNVTILM*Q 397
             + +T +EGL+ CD    T+++ Q
Sbjct: 109 SHVSNTWEEGLVDCDGKGATLMLIQ 133


>sp|Q5U2P1|CNNM2_RAT Metal transporter CNNM2 OS=Rattus norvegicus
           GN=Cnnm2 PE=2 SV=1
          Length = 875

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 120 WHLPSIIAVAAGSRGLLHADGGALVPLLPGICLCKGG 10
           W + +  +++A  RG+L A  G L+PLL   C C  G
Sbjct: 25  WKMAARRSLSARGRGVLQAAAGRLLPLLLLSCCCSAG 61


>sp|Q9H8M5|CNNM2_HUMAN Metal transporter CNNM2 OS=Homo sapiens
           GN=CNNM2 PE=2 SV=2
          Length = 875

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 120 WHLPSIIAVAAGSRGLLHADGGALVPLLPGICLCKGG 10
           W + +  +++A  RG+L A  G L+PLL   C C  G
Sbjct: 25  WKMAARRSLSARGRGILQAAAGRLLPLLLLSCCCGAG 61


>sp|Q5TCY1|TTBK1_HUMAN Tau-tubulin kinase 1 OS=Homo sapiens GN=TTBK1
            PE=1 SV=2
          Length = 1321

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 8    RPPLQRQIPGRRGTSAPPSACNSPRLPAATA 100
            +PP +   PGR    A P A  SPRLPA+T+
Sbjct: 1210 QPPGRGLGPGRAQAGARPPAPRSPRLPASTS 1240


>sp|Q5RDX4|ATAD2_PONAB ATPase family AAA domain-containing protein 2
            OS=Pongo abelii GN=ATAD2 PE=2 SV=1
          Length = 1091

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -1

Query: 283  ETGPHQDKGSLTARNEACYRHGDTFAIINRDYKDGPDGTRKC*QEVSQQTKRLG-----V 119
            E  P +D G    R+ AC      +AII  +  +  D  + C +E+ +  K+ G      
Sbjct: 893  EYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE--DFEQLC-EEIQESRKKRGCSSSKY 949

Query: 118  APSLYH 101
            APS YH
Sbjct: 950  APSYYH 955


>sp|Q8CDM1|ATAD2_MOUSE ATPase family AAA domain-containing protein 2
           OS=Mus musculus GN=Atad2 PE=1 SV=1
          Length = 1040

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -1

Query: 283 ETGPHQDKGSLTARNEACYRHGDTFAIINRDYKDGPDGTRKC*QEVSQQTKRLG-----V 119
           E  P +D G    R+ AC      +AII  +  +  D  + C +E+ +  K+ G      
Sbjct: 711 EYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE--DFEQLC-EEIQESRKKRGCSSSKY 767

Query: 118 APSLYH 101
           APS YH
Sbjct: 768 APSYYH 773


>sp|Q6PL18|ATAD2_HUMAN ATPase family AAA domain-containing protein 2
            OS=Homo sapiens GN=ATAD2 PE=1 SV=1
          Length = 1390

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -1

Query: 283  ETGPHQDKGSLTARNEACYRHGDTFAIINRDYKDGPDGTRKC*QEVSQQTKRLG-----V 119
            E  P +D G    R+ AC      +AII  +  +  D  + C +E+ +  K+ G      
Sbjct: 1062 EYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE--DFEQLC-EEIQESRKKRGCSSSKY 1118

Query: 118  APSLYH 101
            APS YH
Sbjct: 1119 APSYYH 1124


>sp|Q9QYC7|VKGC_MOUSE Vitamin K-dependent gamma-carboxylase OS=Mus
           musculus GN=Ggcx PE=2 SV=1
          Length = 757

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 31  PRKKRNKCPTICVQQPTASCCYSYDRGKV-PRP 126
           P++ +   PT    +P+ASC Y   RGK  P+P
Sbjct: 324 PKRLQELLPTKAAPRPSASCVYKRSRGKAGPKP 356


>sp|Q6RH51|TAUZ_PARPN UPF0324 membrane protein tauZ OS=Paracoccus
           pantotrophus GN=tauZ PE=3 SV=1
          Length = 338

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 99  AVAAGSRGLLHADGGALVPLLPGICL 22
           ++A  +RGL  ADGG   PLLPG  +
Sbjct: 237 SLAIRARGLADADGGKAPPLLPGFVI 262


>sp|Q1DHE1|HIR1_COCIM Protein HIR1 OS=Coccidioides immitis GN=HIR1
           PE=3 SV=1
          Length = 1061

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 115 PSLYHSCSSRKPW-AVARRWWGTCSSSSWDLSL 20
           PSLY      +PW AVA ++W T  SS  DL L
Sbjct: 841 PSLYTWQRLSEPWFAVASQYWNTTDSSVGDLQL 873
tr_hit_id Q57UK6
Definition tr|Q57UK6|Q57UK6_9TRYP Putative uncharacterized protein OS=Trypanosoma brucei
Align length 92
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947072|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_L04, 5'
         (406 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q57UK6|Q57UK6_9TRYP Putative uncharacterized protein OS=Trypa...    37   0.38 
tr|Q4T1U0|Q4T1U0_TETNG Chromosome 2 SCAF10486, whole genome shot...    33   7.2  
tr|Q381C9|Q381C9_9TRYP ATP-dependent DEAD/H RNA helicase, putati...    33   7.2  
tr|A3W8X0|A3W8X0_9RHOB ParB-like partition protein OS=Roseovariu...    33   9.4  
tr|A5AIN3|A5AIN3_VITVI Putative uncharacterized protein OS=Vitis...    33   9.4  
tr|Q2HGG2|Q2HGG2_CHAGB Putative uncharacterized protein OS=Chaet...    33   9.4  

>tr|Q57UK6|Q57UK6_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.8.5340 PE=4 SV=1
          Length = 195

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +2

Query: 14  PLQRQIPGRRGT-SAPPSACNSPRLPAATAMIEGRCHAQALCLL*YFLLTFPGAIWPIL- 187
           PLQ+  P  RG+ S P +  N P   +A  M         LC L      FPGA+   + 
Sbjct: 18  PLQQPFPRHRGSRSGPRAGANFPMPKSAKNMF-------LLCPL------FPGAVHNFVW 64

Query: 188 VISIYNCKCISVSVTCFVPGSERTFVLMRSCF 283
             ++     +S+SVT F  GSERTFVL R  F
Sbjct: 65  YFTLLLPMLVSLSVTDF--GSERTFVLARGTF 94


>tr|Q4T1U0|Q4T1U0_TETNG Chromosome 2 SCAF10486, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00008646001 PE=4 SV=1
          Length = 296

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 110 GRCHAQALCLL*YFLLTFPGAIWPILVISIYNCKCISVSVTCFVPGSERTFVLMRSCFLS 289
           G CHA  +     F++T    I+  + + + +C  ISV + CF      T     +CFL+
Sbjct: 2   GCCHAAII-----FIMTMYTHIYDRVSLPLRHCFSISVDLDCFTVTGSSTLARAFACFLT 56

Query: 290 CD--WL 301
            D  WL
Sbjct: 57  ADIIWL 62


>tr|Q381C9|Q381C9_9TRYP ATP-dependent DEAD/H RNA helicase, putative
           OS=Trypanosoma brucei GN=Tb11.01.8290 PE=4 SV=1
          Length = 569

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 28  DPRKKRNKCPTICVQQPTASCCYSYDRGKV 117
           D   ++ +C  + ++Q  ++CC+SYD GK+
Sbjct: 383 DTLAEQRECVAVAMKQSNSTCCHSYDEGKI 412


>tr|A3W8X0|A3W8X0_9RHOB ParB-like partition protein OS=Roseovarius
           sp. 217 GN=ROS217_03530 PE=4 SV=1
          Length = 321

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 296 WLSEAAFCENILDSTKDEGLMYCDLTNV 379
           W+ +A F  +++DS KDEGL+ CD  N+
Sbjct: 110 WIEKALFARSLIDSGKDEGLV-CDALNI 136


>tr|A5AIN3|A5AIN3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004762 PE=4 SV=1
          Length = 214

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 65  ACNSPRLPAATAMIEGRCHAQALCLL*YFLLTFPGAIWPILVISIYNCKCISVSVTCFVP 244
           A  SP+L   +  ++G     +L ++   L      IW ILV  I   +   + V CF P
Sbjct: 122 AAISPQL--VSFAVDGVLILASLSIIKALLEFLVNTIWSILVYFIIGQEASEIKVRCFAP 179

Query: 245 GSERTFVLMRSCF-LSCDWLSEA 310
             +RTF  +  C  ++  W  +A
Sbjct: 180 LEKRTFEYLILCLVVAAPWSEDA 202


>tr|Q2HGG2|Q2HGG2_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_00692 PE=4 SV=1
          Length = 433

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2   GTRPPL-QRQIPGRRGTSAPPSACNSPRLPAATAMIEG 112
           G +PP    ++  RRG +APP  C+S R   ATA   G
Sbjct: 396 GMKPPYAMHEVKKRRGRAAPPGRCHSSRPKIATAKTHG 433