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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947073
Clone id YMU02A01NGRL0014_L05
Library
Length 292
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_L05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGCTGCGTGAAATTGCAGAGTGCGCCGAGGAGTATCCTGAACCCTTCATCCGCGTGCTGG
GCTTTGACGCTAAGAGGCAGGTGCATGTCTCCGGCTTCCTTGTCCAAAACCCCTCTGTCT
AAACTTTCTTAAAGCAAGCCATTTTATTTGGCATGAATGCCTGCTTCCCTTTTCCCACTG
GCGCCTAACAAGCTTGCTCTTATGATCTTTTGTGTCCCACCCACTTTGCATACATAATGA
AACAACTTCCCAGTGGTGGCTTCTGAAATATATACAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P17673
Definition sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens
Align length 39
Score (bit) 49.7
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947073|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_L05, 5'
         (275 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...    50   5e-06
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha...    47   4e-05
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...    47   4e-05
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...    47   4e-05
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...    47   4e-05
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    46   5e-05
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...    46   7e-05
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    46   7e-05
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    46   7e-05
sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai...    45   9e-05
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...    45   9e-05
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...    45   9e-05
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...    45   9e-05
sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chai...    45   9e-05
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha...    45   9e-05
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...    45   9e-05
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    45   1e-04
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16129|RBS1_ACECL Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...    45   1e-04
sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small cha...    45   1e-04
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...    45   1e-04

>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPSV 119
           L+E+AEC  EYPE FIR++GFD  RQV    F+   P V
Sbjct: 139 LKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2
           SV=1
          Length = 179

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           ++E AEC +EYP  FIRV+GFD  RQV    F+V+ P
Sbjct: 142 VKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2
           SV=1
          Length = 179

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           ++E AEC +EYP  FIRV+GFD  RQV    F+V+ P
Sbjct: 142 VKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2
           SV=1
          Length = 179

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           ++E AEC +EYP  FIRV+GFD  RQV    F+V+ P
Sbjct: 142 VKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain
           1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2
           SV=1
          Length = 179

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           ++E AEC +EYP  FIRV+GFD  RQV    F+V+ P
Sbjct: 142 VKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           L+E+ EC + YP  FIR++GFD KRQV +  F+   P
Sbjct: 143 LKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           ++E+ EC +EYP  FIRV+GFD  RQV    F+V  P
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2
          Length = 175

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           L EI+ C + +P+ +IR++ FDA RQV +SGFLV  P
Sbjct: 125 LTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           L E+ EC +EYP  FIR++GFD+ RQV    F+   P+
Sbjct: 141 LNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain
           (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1
          Length = 82

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           L+E+ EC +EYP  FIR++GFD  RQV    F+   P
Sbjct: 40  LKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76
tr_hit_id Q43109
Definition tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small chain (Fragment) OS=Pteris vittata
Align length 38
Score (bit) 67.8
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947073|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_L05, 5'
         (275 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small c...    68   3e-10
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    66   1e-09
tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small c...    59   9e-08
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...    51   3e-05
tr|Q9SAP7|Q9SAP7_TRIRP Ribulose bisphosphate carboxylase small c...    50   7e-05
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...    48   3e-04
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...    48   3e-04
tr|Q68BK3|Q68BK3_NANBA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...    47   4e-04
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...    47   5e-04
tr|Q7XYK5|Q7XYK5_BIGNA Ribulose-1,5-bisphosphate carboxylase/oxy...    47   6e-04
tr|Q39387|Q39387_BATOE Ribulose bisphosphate carboxylase small c...    47   6e-04
tr|Q14K75|Q14K75_PLAAC Ribulose bisphosphate carboxylase small c...    46   8e-04
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...    46   8e-04
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...    46   8e-04
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...    46   0.001

>tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pteris vittata GN=rbcS3 PE=2 SV=1
          Length = 43

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 32/38 (84%), Positives = 34/38 (89%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREIAECA+EYP  FIRVLGFDAKRQV V+GFLVQ PS
Sbjct: 5   LREIAECAKEYPSAFIRVLGFDAKRQVQVAGFLVQRPS 42


>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 31/38 (81%), Positives = 34/38 (89%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREIAECA+EYP  FIRVLGFDAKRQV V+GFLV+ PS
Sbjct: 136 LREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pteris vittata GN=rbcS1 PE=2 SV=1
          Length = 34

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +3

Query: 12  IAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNP 113
           IAECA+EYP  FIRVLGFDAKRQV V+GFLV+ P
Sbjct: 1   IAECAKEYPNAFIRVLGFDAKRQVQVAGFLVKKP 34


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREI EC  ++P  ++RVLGFD+K+QV + GFLV  P+
Sbjct: 177 LREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREI EC   YP  ++RVLGFD+K+QV + GFLV  P+
Sbjct: 147 LREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_226715 PE=3 SV=1
          Length = 91

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREI EC   YP  ++RVLGFD+K+QV + GFLV  P+
Sbjct: 54  LREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 91


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREI EC  ++P  ++RVLGFD+K+QV + GFLV  P+
Sbjct: 147 LREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREI EC  ++P  ++RVLGFD+K+QV + GFLV  P+
Sbjct: 146 LREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREI EC + +P  ++RVLGFD+K+QV + GFLV  P+
Sbjct: 142 LREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +3

Query: 3   LREIAECAEEYPEPFIRVLGFDAKRQVHVSGFLVQNPS 116
           LREI EC + +P  ++RVLGFD+K+QV + GFLV  P+
Sbjct: 142 LREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179