NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947076
Clone id YMU02A01NGRL0014_L11
Library
Length 298
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_L11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGATAAGAAGGGGCTGCAACAAGTTGCTAAGGAGAATGGCATTAACCTTAACAAGTTCT
GATCATCGCCAGCCATGTGTATGAAGTCGATTTAGCACTTTGTTGCACATCATGAAGCAA
TTCAAGTAACAACAGGTTCTTACTTGTTTTAAGCAGCTCAGCAAGAGTGTCGGATGACAT
CCTGTATTCGTCAGAAGAGTGTCGCACAAATTTGTTTTTGTGTAGAAGCCCTTGATTTGG
ATGCTTTATTGCTCAAATGTTTTTCTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q755M8
Definition sp|Q755M8|TRM61_ASHGO tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Ashbya gossypii
Align length 35
Score (bit) 32.0
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947076|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_L11, 5'
         (268 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q755M8|TRM61_ASHGO tRNA (adenine-N(1)-)-methyltransferase cat...    32   1.00 
sp|Q6CN53|TRM61_KLULA tRNA (adenine-N(1)-)-methyltransferase cat...    31   1.7  
sp|P46959|TRM61_YEAST tRNA (adenine-N(1)-)-methyltransferase cat...    31   2.2  
sp|Q6BX32|TRM61_DEBHA tRNA (adenine-N(1)-)-methyltransferase cat...    30   2.9  
sp|Q6FL77|TRM61_CANGA tRNA (adenine-N(1)-)-methyltransferase cat...    30   2.9  
sp|P39944|UBP5_YEAST Ubiquitin carboxyl-terminal hydrolase 5 OS=...    30   3.8  
sp|Q5A416|TRM61_CANAL tRNA (adenine-N(1)-)-methyltransferase cat...    30   5.0  
sp|P72851|RL28_SYNY3 50S ribosomal protein L28 OS=Synechocystis ...    29   6.5  
sp|Q89AG4|Y330_BUCBP UPF0176 protein bbp_330 OS=Buchnera aphidic...    29   8.5  
sp|Q6C0P9|TRM61_YARLI tRNA (adenine-N(1)-)-methyltransferase cat...    29   8.5  
sp|Q7V1H0|RL28_PROMP 50S ribosomal protein L28 OS=Prochlorococcu...    29   8.5  
sp|A2BWN0|RL28_PROM5 50S ribosomal protein L28 OS=Prochlorococcu...    29   8.5  

>sp|Q755M8|TRM61_ASHGO tRNA (adenine-N(1)-)-methyltransferase
           catalytic subunit TRM61 OS=Ashbya gossypii GN=TRM61 PE=3
           SV=1
          Length = 406

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 149 KQVRTCCYLNCFMMCNKVLNRLHTHGWR*SELVKV 45
           +  R CC+  C    +K L  L  HGW   E V++
Sbjct: 221 RTARLCCFSPCIEQVDKTLEALELHGWEEIETVEI 255


>sp|Q6CN53|TRM61_KLULA tRNA (adenine-N(1)-)-methyltransferase
           catalytic subunit TRM61 OS=Kluyveromyces lactis GN=TRM61
           PE=3 SV=1
          Length = 407

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 170 TLLLSCLKQVRTCCYLNCFMMCNKVLNRLHTHGWR*SELVKV 45
           T ++S  K+V  CC+  C    +K L  L   GW+  + V++
Sbjct: 215 TSVISKEKKVNLCCFSPCIEQVDKTLEALEEEGWQDVQTVEI 256


>sp|P46959|TRM61_YEAST tRNA (adenine-N(1)-)-methyltransferase
           catalytic subunit TRM61 OS=Saccharomyces cerevisiae
           GN=GCD14 PE=1 SV=1
          Length = 383

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 176 HPTLLLSCLKQVRTCCYLNCFMMCNKVLNRLHTHGWR*SELVKV 45
           H   ++S  ++V  CC+  C    +K L+ L  +GW   E+V++
Sbjct: 213 HLDSVISVDEKVGLCCFSPCIEQVDKTLDVLEKYGWTDVEMVEI 256


>sp|Q6BX32|TRM61_DEBHA tRNA (adenine-N(1)-)-methyltransferase
           catalytic subunit TRM61 OS=Debaryomyces hansenii
           GN=TRM61 PE=3 SV=2
          Length = 369

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 164 LLSCLKQVRTCCYLNCFMMCNKVLNRLHTHGWR*SELVKV 45
           ++S   +V  CC+  C     K +  L T GW   E+V+V
Sbjct: 206 VISHQSRVGICCFSPCIEQVEKTVKALETEGWSNIEMVEV 245


>sp|Q6FL77|TRM61_CANGA tRNA (adenine-N(1)-)-methyltransferase
           catalytic subunit TRM61 OS=Candida glabrata GN=TRM61
           PE=3 SV=1
          Length = 374

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 149 KQVRTCCYLNCFMMCNKVLNRLHTHGWR*SELVKV 45
           ++V  CC+  C    +K L  L  HGW   E+V++
Sbjct: 221 EKVGLCCFSPCIEQVDKTLEVLEKHGWFNVEMVEI 255


>sp|P39944|UBP5_YEAST Ubiquitin carboxyl-terminal hydrolase 5
           OS=Saccharomyces cerevisiae GN=UBP5 PE=1 SV=1
          Length = 805

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 200 TLLTNTGCHPTLLLSCLKQVRTCCYLNCFMMC 105
           T+L N+      L+  L+ +  CCY+NC + C
Sbjct: 432 TILNNSQVLDLDLIVGLENIGNCCYMNCILQC 463


>sp|Q5A416|TRM61_CANAL tRNA (adenine-N(1)-)-methyltransferase
           catalytic subunit TRM61 OS=Candida albicans GN=TRM61
           PE=3 SV=1
          Length = 335

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 176 HPTLLLSCLKQVRTCCYLNCFMMCNKVLNRLHTHGWR*SELVKVNA 39
           H   ++S  K    CC+  C    ++ +  L  +GW   E+V+V A
Sbjct: 193 HLDSVISTSKAAGICCFSPCIEQVDRTVRALEENGWTEIEIVEVAA 238


>sp|P72851|RL28_SYNY3 50S ribosomal protein L28 OS=Synechocystis sp.
           (strain PCC 6803) GN=rpmB PE=3 SV=1
          Length = 78

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 3   DKKGLQQVAKENGINLNKF 59
           + KG+  +AKE GINLNKF
Sbjct: 60  ESKGINAMAKEAGINLNKF 78


>sp|Q89AG4|Y330_BUCBP UPF0176 protein bbp_330 OS=Buchnera aphidicola
           subsp. Baizongia pistaciae GN=bbp_330 PE=3 SV=1
          Length = 312

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 212 NLCDTLLT--NTGCHPTLLLS--CLKQVRTCCYLNCF 114
           NLCDT +   N+ CH   +    C K+   CC  +CF
Sbjct: 271 NLCDTYVNCFNSRCHNLFIQCNFCRKKFHNCCSEHCF 307


>sp|Q6C0P9|TRM61_YARLI tRNA (adenine-N(1)-)-methyltransferase
           catalytic subunit TRM61 OS=Yarrowia lipolytica GN=TRM61
           PE=3 SV=1
          Length = 389

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 140 RTCCYLNCFMMCNKVLNRLHTHGWR*SELVKVNA 39
           R CC+  CF    K +  L   GW   E+V+V A
Sbjct: 203 RVCCFSPCFEQVVKAVQALQEAGWVDIEMVEVAA 236
tr_hit_id Q4UA73
Definition tr|Q4UA73|Q4UA73_THEAN Putative uncharacterized protein OS=Theileria annulata
Align length 48
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947076|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_L11, 5'
         (268 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4UA73|Q4UA73_THEAN Putative uncharacterized protein OS=Theil...    35   1.9  
tr|A7T6N5|A7T6N5_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   7.1  
tr|A5E6V5|A5E6V5_LODEL Protein GCD14 OS=Lodderomyces elongisporu...    33   9.2  

>tr|Q4UA73|Q4UA73_THEAN Putative uncharacterized protein
           OS=Theileria annulata GN=TA07360 PE=4 SV=1
          Length = 880

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 239 QIKGFYTKTNLCDTLLTNTGCHPTLLLSCLKQVRTCCYLNCFMMCNKV 96
           +I GF TK NL   L  +   H  L   C K++ TC   NCF+   K+
Sbjct: 128 KILGFLTKDNLIVVLQRSLSAHFYLKSKCWKRLSTCVLRNCFLSEEKL 175


>tr|A7T6N5|A7T6N5_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g5705 PE=4 SV=1
          Length = 136

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 224 YTKTNLCDTLLTNTGCHPTLLLSCLKQVRTCCYLNCFMMCNKVLNRLHTH 75
           +T T +C+  LT T C+ TL + C   + T C     +MCN  L  +  H
Sbjct: 7   HTLTTMCNHTLT-TMCNHTLTIMCNHTLTTMCNHTLTIMCNHTLTTMCNH 55


>tr|A5E6V5|A5E6V5_LODEL Protein GCD14 OS=Lodderomyces elongisporus
           GN=LELG_05344 PE=4 SV=1
          Length = 338

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 176 HPTLLLSCLKQVRTCCYLNCFMMCNKVLNRLHTHGWR*SELVKVNA 39
           H   ++S  K+   CC+  CF    K +  L  +GW   E+V+V A
Sbjct: 199 HLDSVISKHKRAAICCFSPCFEQVEKTVTALEENGWTSIEMVEVAA 244