DK947083 |
Clone id |
YMU02A01NGRL0014_L21 |
Library |
YMU02 |
Length |
637 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_L21. 5' end sequence. |
Accession |
DK947083 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL303Contig1 |
Sequence |
GCGCGATCTCGACGACGAAGACGAAGCAGAAGCAGTTGCGGCATAAGCAGTCATGACGGT CAAGCGCCGCAACGGTGGACGTAACAAGCACGGAAGAGGCCACACCAACCCCATCAGGTG CTCCAACTGTGGGCGTTGTGTGCCCAAGGACAAGGCTGTTAAGCGGTTTCTTGTAAGGAA CATTGTTGAACAAGCTGCTGTGCGAGATGTGCGGGATGCTTGCGTTTATGATGGGTACGC ACTTCCCAAGCTTTACGCCAAAATGCAGTACTGCGTTTCATGCGCCATACACTCTCACGT TGTCCGTGTGAGATCCCGCACAGCAAGAAGAGTTCGGGAGCCACCTCAAAGGTTTAGACG CAAGGAGGATATGCAGAATCAGAATCAGCGTACCAATGTTCCTGCTGTTAGGAAGTGAAG CGGCGTTTAATTAGTGCATAAGCCAGTAGAGGAAGAAGGCTCATGAATTTTGACTTCTAT CATAGAACTCTTAGAAGAGCATGCTACGAGCATTGCCACTACTGTTGAAGCCATCAATTG GATGGACGTTGAGGGACTTTTGAGTCTTTTGGACGGGCTTGTATCTGATGTTTTGGAAAT GTCTTTCTAATGTTTTTTCGAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8LPJ7 |
Definition |
sp|Q8LPJ7|RS262_ARATH 40S ribosomal protein S26-2 OS=Arabidopsis thaliana |
Align length |
64 |
Score (bit) |
122.0 |
E-value |
1.0e-27 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TYP2 |
Definition |
tr|A9TYP2|A9TYP2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
64 |
Score (bit) |
134.0 |
E-value |
4.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947083|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0014_L21, 5' (620 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TYP2|A9TYP2_PHYPA Predicted protein OS=Physcomitrella paten... 134 4e-30 tr|A9TN72|A9TN72_PHYPA Predicted protein (Fragment) OS=Physcomit... 134 4e-30 tr|A9T5J5|A9T5J5_PHYPA Predicted protein OS=Physcomitrella paten... 134 4e-30 tr|A9NSX0|A9NSX0_PICSI Putative uncharacterized protein OS=Picea... 125 2e-27 tr|A9NR90|A9NR90_PICSI Putative uncharacterized protein OS=Picea... 125 2e-27 tr|A9NL80|A9NL80_PICSI Putative uncharacterized protein OS=Picea... 125 2e-27 tr|A7Q3U7|A7Q3U7_VITVI Chromosome chr13 scaffold_48, whole genom... 123 1e-26 tr|A7NY17|A7NY17_VITVI Chromosome chr6 scaffold_3, whole genome ... 123 1e-26 tr|Q9SWS9|Q9SWS9_PEA Ribosomal protein S26 OS=Pisum sativum GN=R... 121 3e-26 tr|A9PJB6|A9PJB6_POPJC Putative uncharacterized protein OS=Popul... 120 5e-26 tr|A9P8L6|A9P8L6_POPTR Putative uncharacterized protein OS=Popul... 120 5e-26 tr|A9PDZ4|A9PDZ4_POPTR Putative uncharacterized protein OS=Popul... 120 6e-26 tr|Q9ZT03|Q9ZT03_MEDSA Clone MS56 unknown mRNA OS=Medicago sativ... 118 3e-25 tr|B6T1S7|B6T1S7_MAIZE 40S ribosomal protein S26 OS=Zea mays PE=... 115 2e-24 tr|B6T188|B6T188_MAIZE 40S ribosomal protein S26 OS=Zea mays PE=... 115 2e-24 tr|B6SYW0|B6SYW0_MAIZE 40S ribosomal protein S26 OS=Zea mays PE=... 115 2e-24 tr|B6SIP4|B6SIP4_MAIZE 40S ribosomal protein S26 OS=Zea mays PE=... 115 2e-24 tr|B4FEE7|B4FEE7_MAIZE 40S ribosomal protein S26 OS=Zea mays PE=... 115 2e-24 tr|B6TXN6|B6TXN6_MAIZE 40S ribosomal protein S26 OS=Zea mays PE=... 114 4e-24 tr|B6T198|B6T198_MAIZE 40S ribosomal protein S26 OS=Zea mays PE=... 114 4e-24 tr|B6SIA2|B6SIA2_MAIZE 40S ribosomal protein S26 OS=Zea mays PE=... 114 4e-24 tr|B2YI20|B2YI20_9BILA Putative 40S ribosomal protein RPS26 OS=P... 113 8e-24 tr|Q75GN6|Q75GN6_ORYSJ Putative 40S ribosomal protein S26 OS=Ory... 112 1e-23 tr|Q0JI56|Q0JI56_ORYSJ Os01g0823300 protein (Putative uncharacte... 112 1e-23 tr|Q0DHB9|Q0DHB9_ORYSJ Os05g0477300 protein OS=Oryza sativa subs... 112 1e-23 tr|B8ABD0|B8ABD0_ORYSI Putative uncharacterized protein OS=Oryza... 112 1e-23 tr|A2Y5R4|A2Y5R4_ORYSI Putative uncharacterized protein OS=Oryza... 112 1e-23 tr|Q0ZD84|Q0ZD84_PECGU Ribosomal protein S26 OS=Pectinaria gould... 112 2e-23 tr|A0MQ88|A0MQ88_BRABE Ribosomal protein S26 (Fragment) OS=Branc... 111 4e-23 tr|Q6QMZ1|Q6QMZ1_CHILA Ribosomal protein S26 (Fragment) OS=Chinc... 109 1e-22
>tr|A9TYP2|A9TYP2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_199563 PE=4 SV=1 Length = 126
Score = 134 bits (337), Expect = 4e-30 Identities = 60/64 (93%), Positives = 63/64 (98%) Frame = +2
Query: 107 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCA 286 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDV++ACVYDGY LPKLYAKMQYC+SCA Sbjct: 19 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVQEACVYDGYVLPKLYAKMQYCISCA 78
Query: 287 IHSH 298 IHSH Sbjct: 79 IHSH 82
>tr|A9TN72|A9TN72_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_8864 PE=4 SV=1 Length = 104
Score = 134 bits (337), Expect = 4e-30 Identities = 60/64 (93%), Positives = 63/64 (98%) Frame = +2
Query: 107 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCA 286 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDV++ACVYDGY LPKLYAKMQYC+SCA Sbjct: 19 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVQEACVYDGYVLPKLYAKMQYCISCA 78
Query: 287 IHSH 298 IHSH Sbjct: 79 IHSH 82
>tr|A9T5J5|A9T5J5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_140716 PE=4 SV=1 Length = 115
Score = 134 bits (337), Expect = 4e-30 Identities = 60/64 (93%), Positives = 63/64 (98%) Frame = +2
Query: 107 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCA 286 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDV++ACVYDGY LPKLYAKMQYC+SCA Sbjct: 20 NPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVQEACVYDGYVLPKLYAKMQYCISCA 79
Query: 287 IHSH 298 IHSH Sbjct: 80 IHSH 83
>tr|A9NSX0|A9NSX0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 126
Score = 125 bits (315), Expect = 2e-27 Identities = 57/62 (91%), Positives = 60/62 (96%) Frame = +2
Query: 113 IRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCAIH 292 IRCSNCGRC PKDKAVKRFLVRNIVEQAAVRDV++ACV+DGY LPKLYAKMQYCVSCAIH Sbjct: 21 IRCSNCGRCTPKDKAVKRFLVRNIVEQAAVRDVQEACVHDGYMLPKLYAKMQYCVSCAIH 80
Query: 293 SH 298 SH Sbjct: 81 SH 82
>tr|A9NR90|A9NR90_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 117
Score = 125 bits (315), Expect = 2e-27 Identities = 57/62 (91%), Positives = 60/62 (96%) Frame = +2
Query: 113 IRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCAIH 292 IRCSNCGRC PKDKAVKRFLVRNIVEQAAVRDV++ACV+DGY LPKLYAKMQYCVSCAIH Sbjct: 21 IRCSNCGRCTPKDKAVKRFLVRNIVEQAAVRDVQEACVHDGYMLPKLYAKMQYCVSCAIH 80
Query: 293 SH 298 SH Sbjct: 81 SH 82
>tr|A9NL80|A9NL80_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 126
Score = 125 bits (315), Expect = 2e-27 Identities = 57/62 (91%), Positives = 60/62 (96%) Frame = +2
Query: 113 IRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCAIH 292 IRCSNCGRC PKDKAVKRFLVRNIVEQAAVRDV++ACV+DGY LPKLYAKMQYCVSCAIH Sbjct: 21 IRCSNCGRCTPKDKAVKRFLVRNIVEQAAVRDVQEACVHDGYMLPKLYAKMQYCVSCAIH 80
Query: 293 SH 298 SH Sbjct: 81 SH 82
>tr|A7Q3U7|A7Q3U7_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029423001 PE=4 SV=1 Length = 144
Score = 123 bits (308), Expect = 1e-26 Identities = 55/62 (88%), Positives = 59/62 (95%) Frame = +2
Query: 113 IRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCAIH 292 IRCSNCG+C PKDKA+KRFLVRNIVEQAAVRDV++ACVYD Y LPKLYAKMQYCVSCAIH Sbjct: 41 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDTYTLPKLYAKMQYCVSCAIH 100
Query: 293 SH 298 SH Sbjct: 101 SH 102
>tr|A7NY17|A7NY17_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023949001 PE=4 SV=1 Length = 152
Score = 123 bits (308), Expect = 1e-26 Identities = 55/62 (88%), Positives = 59/62 (95%) Frame = +2
Query: 113 IRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCAIH 292 IRCSNCG+C PKDKA+KRFLVRNIVEQAAVRDV++ACVYD Y LPKLYAKMQYCVSCAIH Sbjct: 49 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDTYTLPKLYAKMQYCVSCAIH 108
Query: 293 SH 298 SH Sbjct: 109 SH 110
>tr|Q9SWS9|Q9SWS9_PEA Ribosomal protein S26 OS=Pisum sativum GN=RPS26 PE=2 SV=1 Length = 130
Score = 121 bits (304), Expect = 3e-26 Identities = 54/62 (87%), Positives = 58/62 (93%) Frame = +2
Query: 113 IRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSCAIH 292 IRCSNCG+C PKDKA+KRFLVRNIVEQAAVRDV++ACVYD Y LPKLY KMQYCVSCAIH Sbjct: 21 IRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYVKMQYCVSCAIH 80
Query: 293 SH 298 SH Sbjct: 81 SH 82
>tr|A9PJB6|A9PJB6_POPJC Putative uncharacterized protein OS=Populus jackii PE=2 SV=1 Length = 132
Score = 120 bits (302), Expect = 5e-26 Identities = 54/64 (84%), Positives = 59/64 (92%) Frame = +2
Query: 104 TNPIRCSNCGRCVPKDKAVKRFLVRNIVEQAAVRDVRDACVYDGYALPKLYAKMQYCVSC 283 T IRCSNCG+C PKDKA+KRFLVRNIVEQAAVRDV+++CVYDGY LPKLY KMQYCVSC Sbjct: 18 TKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQESCVYDGYVLPKLYVKMQYCVSC 77
Query: 284 AIHS 295 AIHS Sbjct: 78 AIHS 81
|