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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947099
Clone id YMU02A01NGRL0014_M16
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_M16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACGTGTGCTGCGAATGCTGCTAACCATTTCCAAGCACACACATCGCGGTATCCCACACTT
CAGTCTCCCTCTACGCTCTCACCCGACTTACTGCTCCAGCTTCCTCTCCTCCATCGCCAT
GGACGATAGTCAAAGCGCTCATGAGAAACGTGAGAAAGAATTATCTGACAACGTAAATGC
GGATAGAAAAGGAGGACCTCTGTCTGAAAATATTCTCCCCCATCTCTTGAATTTGTACAA
CTGCACCTCTTCGGCAGTAGATTATGAGATTTATGCGCCAGATGGGACCTTTGAAGATCC
GTTGATGTGTGCTCAGGGGGTCAAACAAATCAAGTCTGCATTTTACTCAATTCCGAAGGT
GTTTAGTGAGGGAAAGATGGGTGAATACACGGTTCATGAAAACATGATCGGGCCTGGCAC
TGGCGAGATCAACATTGACAATGTTCAACATTATAAACTTTTGGGACGGCAAATTGATAT
GGTTTCACTAATTAAGTTGCAGGTGAAAGATGGGAAAGTCGTGCGACATGAAGATTTGTG
GGATAAAAAACCATTGTGGAATAGGACGACTG
■■Homology search results ■■ -
sp_hit_id Q5P4D1
Definition sp|Q5P4D1|GATB_AZOSE Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Azoarcus sp. (strain EbN1)
Align length 43
Score (bit) 30.8
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947099|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_M16, 5'
         (572 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5P4D1|GATB_AZOSE Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    31   5.0  
sp|P35415|MYSP1_DROME Paramyosin, long form OS=Drosophila melano...    30   6.5  
sp|Q2TBA3|MALT1_MOUSE Mucosa-associated lymphoid tissue lymphoma...    30   8.5  

>sp|Q5P4D1|GATB_AZOSE Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Azoarcus sp. (strain EbN1)
           GN=gatB PE=3 SV=1
          Length = 493

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 170 NVNADRKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFED 298
           NV+  R GGPL        LN +     A+D+E+    GT ED
Sbjct: 203 NVSVRRPGGPLGTRREIKNLNSFRFLQQAIDFEVQWQIGTIED 245


>sp|P35415|MYSP1_DROME Paramyosin, long form OS=Drosophila
           melanogaster GN=Prm PE=1 SV=1
          Length = 879

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 374 KMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIK 496
           +  +Y+      GPGT ++NI+ +Q    L R  D + L++
Sbjct: 8   RSSKYSYRATSTGPGTADVNIEYIQDLSSLSRLEDKIRLLQ 48


>sp|Q2TBA3|MALT1_MOUSE Mucosa-associated lymphoid tissue lymphoma
           translocation protein 1 homolog OS=Mus musculus GN=Malt1
           PE=2 SV=2
          Length = 832

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 299 DLQRSHLAHKSHNLLPKRCSCTNSRDGGEYFQTEVLLFYPHLRCQIILSHVSHERFDYRP 120
           D+  SHL +    + P RC C+ +        T +  + PH  CQ   S+V  E  D  P
Sbjct: 767 DVYHSHLGNADSGMPPDRCHCSRTP------HTFISNYPPHHYCQFGRSNVPVETTDEMP 820
tr_hit_id A9NLS2
Definition tr|A9NLS2|A9NLS2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 135
Score (bit) 192.0
E-value 1.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947099|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_M16, 5'
         (572 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NLS2|A9NLS2_PICSI Putative uncharacterized protein OS=Picea...   192   1e-47
tr|A7QHV5|A7QHV5_VITVI Chromosome undetermined scaffold_100, who...   177   3e-43
tr|A9RXL1|A9RXL1_PHYPA Predicted protein OS=Physcomitrella paten...   177   4e-43
tr|A5AHP6|A5AHP6_VITVI Putative uncharacterized protein OS=Vitis...   174   2e-42
tr|B6SR37|B6SR37_MAIZE Putative uncharacterized protein OS=Zea m...   172   2e-41
tr|Q9FMC7|Q9FMC7_ARATH Genomic DNA, chromosome 5, P1 clone:MUK11...   170   5e-41
tr|A9PJT0|A9PJT0_POPJC Putative uncharacterized protein OS=Popul...   170   6e-41
tr|Q5JJV6|Q5JJV6_ORYSJ cDNA clone:002-152-E03, full insert seque...   167   3e-40
tr|B8A9Y3|B8A9Y3_ORYSI Putative uncharacterized protein OS=Oryza...   167   3e-40
tr|A9RQ63|A9RQ63_PHYPA Predicted protein OS=Physcomitrella paten...   162   9e-39
tr|A9RPB8|A9RPB8_PHYPA Predicted protein (Fragment) OS=Physcomit...   158   2e-37
tr|A3A1V3|A3A1V3_ORYSJ Putative uncharacterized protein OS=Oryza...   147   4e-34
tr|B6SQ99|B6SQ99_MAIZE Putative uncharacterized protein OS=Zea m...   121   3e-26
tr|A9TYC9|A9TYC9_PHYPA Predicted protein OS=Physcomitrella paten...   115   1e-24
tr|Q7SGD6|Q7SGD6_NEUCR Predicted protein (Putative uncharacteriz...    57   9e-07
tr|B6N8B7|B6N8B7_BRAFL Putative uncharacterized protein OS=Branc...    52   2e-05
tr|B8P8N2|B8P8N2_9APHY Predicted protein OS=Postia placenta Mad-...    52   3e-05
tr|B6L8W2|B6L8W2_BRAFL Putative uncharacterized protein OS=Branc...    49   2e-04
tr|Q5BB59|Q5BB59_EMENI Putative uncharacterized protein OS=Emeri...    49   3e-04
tr|A2R1Q6|A2R1Q6_ASPNC Similarity to hypothetical protein MUK11 ...    48   4e-04
tr|Q0TZP4|Q0TZP4_PHANO Putative uncharacterized protein OS=Phaeo...    45   0.002
tr|B8NWM9|B8NWM9_ASPFL Putative uncharacterized protein OS=Asper...    44   0.005
tr|A8N341|A8N341_COPC7 Predicted protein OS=Coprinopsis cinerea ...    44   0.008
tr|A6XYN4|A6XYN4_VIBCH Transcriptional regulator, putative OS=Vi...    40   0.12 
tr|A6ABE3|A6ABE3_VIBCH Putative transcriptional regulator OS=Vib...    40   0.12 
tr|A6A3U2|A6A3U2_VIBCH Transcriptional regulator, putative OS=Vi...    40   0.12 
tr|A3EJK8|A3EJK8_VIBCH Transcriptional regulator, putative OS=Vi...    40   0.12 
tr|A2PV81|A2PV81_VIBCH Transcriptional regulator, putative OS=Vi...    40   0.12 
tr|A2P7A4|A2P7A4_VIBCH Transcriptional regulator, putative OS=Vi...    40   0.12 
tr|B2VW33|B2VW33_PYRTR Putative uncharacterized protein OS=Pyren...    40   0.12 

>tr|A9NLS2|A9NLS2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 227

 Score =  192 bits (488), Expect = 1e-47
 Identities = 86/135 (63%), Positives = 112/135 (82%)
 Frame = +2

Query: 167 DNVNADRKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFEDPLMCAQGVKQIKSAFY 346
           + ++ +++ G LS NI+PH+LN+Y C+++A D+EIYAP+ TFEDPLMCA GVKQIKS+FY
Sbjct: 60  ERIDCNKELGALSCNIIPHILNIYGCSATARDFEIYAPNATFEDPLMCAHGVKQIKSSFY 119

Query: 347 SIPKVFSEGKMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIKLQVKDGKVVR 526
           S+PKVFSE K+ EY+V EN   PG GEI IDN QHYK++G+ ID+ +LIKLQV+ GKV+R
Sbjct: 120 SLPKVFSEAKIVEYSVQENENSPGNGEILIDNKQHYKIMGKNIDLTTLIKLQVEQGKVIR 179

Query: 527 HEDLWDKKPLWNRTT 571
           HED W+KKPLWNR T
Sbjct: 180 HEDWWNKKPLWNRHT 194


>tr|A7QHV5|A7QHV5_VITVI Chromosome undetermined scaffold_100, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00013811001 PE=4 SV=1
          Length = 177

 Score =  177 bits (450), Expect = 3e-43
 Identities = 90/143 (62%), Positives = 111/143 (77%)
 Frame = +2

Query: 143 EKREKELSDNVNADRKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFEDPLMCAQGV 322
           E+  KE S+ VNA ++   +S++I+PH+LNLY   ++  D+EIYAPD TFEDPLMCA GV
Sbjct: 6   EQLGKEASE-VNALKR---VSDDIIPHILNLYGACAAPRDFEIYAPDATFEDPLMCAHGV 61

Query: 323 KQIKSAFYSIPKVFSEGKMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIKLQ 502
           KQIKSAFYS+ KVF+E K+ EY++ EN+I P   EI +DN QHYK LGR IDM+SLIKL 
Sbjct: 62  KQIKSAFYSLSKVFNESKIVEYSIKENLISPEKTEILMDNKQHYKFLGRGIDMISLIKLH 121

Query: 503 VKDGKVVRHEDLWDKKPLWNRTT 571
           V+ GKVVRHED WDKKPL NR T
Sbjct: 122 VEGGKVVRHEDWWDKKPLLNRET 144


>tr|A9RXL1|A9RXL1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_179168 PE=4 SV=1
          Length = 176

 Score =  177 bits (449), Expect = 4e-43
 Identities = 86/136 (63%), Positives = 105/136 (77%), Gaps = 1/136 (0%)
 Frame = +2

Query: 167 DNVNADRKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFEDPLMCAQGVKQIKSAFY 346
           D+V+  ++ G ++  I+PHLLNLYNCTS+A DYEIYAP+ TFEDPLM A GV QIKSAFY
Sbjct: 11  DSVDTSKELGRIATQIIPHLLNLYNCTSTAADYEIYAPNATFEDPLMRAHGVSQIKSAFY 70

Query: 347 SIPKVFSEGKMGEYTVH-ENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIKLQVKDGKVV 523
           SIPKVFSE ++ EYTV  E    P +GEI +D  QHYK L + IDM S+IKL+V+ GK+V
Sbjct: 71  SIPKVFSEAEIVEYTVELEEDKTPSSGEIRLDTQQHYKFLSKTIDMSSVIKLRVEGGKIV 130

Query: 524 RHEDLWDKKPLWNRTT 571
           RHEDLW+  PLWNR T
Sbjct: 131 RHEDLWEGNPLWNRHT 146


>tr|A5AHP6|A5AHP6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019410 PE=4 SV=1
          Length = 177

 Score =  174 bits (442), Expect = 2e-42
 Identities = 89/143 (62%), Positives = 110/143 (76%)
 Frame = +2

Query: 143 EKREKELSDNVNADRKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFEDPLMCAQGV 322
           E+  KE S+ VNA ++   +S++I+PH+LNLY   ++  D+EIYAPD TFEDPLMCA GV
Sbjct: 6   EQLGKEASE-VNALKR---VSDDIIPHILNLYGACAAPRDFEIYAPDATFEDPLMCAHGV 61

Query: 323 KQIKSAFYSIPKVFSEGKMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIKLQ 502
           KQIKSAFYS+ KVF+E K+ EY++ EN+I     EI +DN QHYK LGR IDM+SLIKL 
Sbjct: 62  KQIKSAFYSLSKVFNESKIVEYSIKENLISSEKTEILMDNKQHYKFLGRGIDMISLIKLH 121

Query: 503 VKDGKVVRHEDLWDKKPLWNRTT 571
           V+ GKVVRHED WDKKPL NR T
Sbjct: 122 VEGGKVVRHEDWWDKKPLLNRET 144


>tr|B6SR37|B6SR37_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 173

 Score =  172 bits (435), Expect = 2e-41
 Identities = 79/127 (62%), Positives = 102/127 (80%)
 Frame = +2

Query: 191 GGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFEDPLMCAQGVKQIKSAFYSIPKVFSE 370
           GG +++ I+PHLLN+Y  +++A D+EIYAP+ TFEDPLM A GVKQIKSAFY++PKVF E
Sbjct: 7   GGSVADRIMPHLLNIYGSSATARDFEIYAPNATFEDPLMRAHGVKQIKSAFYTLPKVFGE 66

Query: 371 GKMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIKLQVKDGKVVRHEDLWDKK 550
            K+ EYTV EN +GPG  E+ I N QHYK+LG+ +D+ SLI+LQ++DGKVV+HED W  K
Sbjct: 67  SKITEYTVQENPMGPGKTEVVIQNKQHYKVLGKPVDLTSLIRLQLQDGKVVKHEDWWHGK 126

Query: 551 PLWNRTT 571
           PL NR T
Sbjct: 127 PLKNRDT 133


>tr|Q9FMC7|Q9FMC7_ARATH Genomic DNA, chromosome 5, P1 clone:MUK11
           (Putative uncharacterized protein At5g04830)
           OS=Arabidopsis thaliana GN=At5g04830 PE=2 SV=1
          Length = 178

 Score =  170 bits (431), Expect = 5e-41
 Identities = 85/151 (56%), Positives = 106/151 (70%)
 Frame = +2

Query: 119 MDDSQSAHEKREKELSDNVNADRKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFED 298
           MD ++    K   EL  N          ++ I+PHLLNLY  ++ A D+++YAP+ +FED
Sbjct: 1   MDPARECEGKGACELKSNKR-------FADKIMPHLLNLYGSSAKANDFDMYAPNASFED 53

Query: 299 PLMCAQGVKQIKSAFYSIPKVFSEGKMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQID 478
           PL  AQGVKQIKSAFYS+PKVF E K+ EY + E+   PG  EI IDN QHYK++GR ID
Sbjct: 54  PLTHAQGVKQIKSAFYSLPKVFGESKIVEYHIQESETSPGKKEILIDNKQHYKIMGRNID 113

Query: 479 MVSLIKLQVKDGKVVRHEDLWDKKPLWNRTT 571
           M+SLIKL V+DGK+VRHED WDKKPL NR T
Sbjct: 114 MISLIKLYVEDGKIVRHEDWWDKKPLRNRDT 144


>tr|A9PJT0|A9PJT0_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 187

 Score =  170 bits (430), Expect = 6e-41
 Identities = 81/129 (62%), Positives = 101/129 (78%)
 Frame = +2

Query: 185 RKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFEDPLMCAQGVKQIKSAFYSIPKVF 364
           + G P+S++I+PH+LNLY   ++  D+EIYA + +FEDPLMCA GVKQIKSAFYS+ K+F
Sbjct: 26  KPGKPVSDDIIPHILNLYGSCATPRDFEIYASNASFEDPLMCAHGVKQIKSAFYSLSKIF 85

Query: 365 SEGKMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIKLQVKDGKVVRHEDLWD 544
           SE ++ EY+V E  + P   EI IDN Q+YK LGR IDM+SLIKL V+DGKVVRHED WD
Sbjct: 86  SESRIVEYSVKEKAMSPEKQEILIDNKQNYKFLGRSIDMISLIKLYVEDGKVVRHEDWWD 145

Query: 545 KKPLWNRTT 571
           KKPL NR T
Sbjct: 146 KKPLRNRET 154


>tr|Q5JJV6|Q5JJV6_ORYSJ cDNA clone:002-152-E03, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0458E05.22 PE=2 SV=1
          Length = 205

 Score =  167 bits (424), Expect = 3e-40
 Identities = 80/130 (61%), Positives = 98/130 (75%)
 Frame = +2

Query: 182 DRKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFEDPLMCAQGVKQIKSAFYSIPKV 361
           ++   P+S +I+PHLLN+Y   ++A D+EIYA   TFEDPLM A GVKQIKSAFY++PK+
Sbjct: 45  EKAASPVSRHIMPHLLNIYGSCATARDFEIYAAHATFEDPLMRAHGVKQIKSAFYTLPKL 104

Query: 362 FSEGKMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIKLQVKDGKVVRHEDLW 541
           F E K+ EYT+ EN   PG  EI IDN QHYK LGR ID+ SLI L V+DGKVV+H+D W
Sbjct: 105 FGESKIVEYTITENETAPGKVEILIDNKQHYKFLGRAIDLASLITLDVEDGKVVKHQDWW 164

Query: 542 DKKPLWNRTT 571
           DKKPL NR T
Sbjct: 165 DKKPLKNRDT 174


>tr|B8A9Y3|B8A9Y3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05337 PE=4 SV=1
          Length = 164

 Score =  167 bits (424), Expect = 3e-40
 Identities = 80/130 (61%), Positives = 98/130 (75%)
 Frame = +2

Query: 182 DRKGGPLSENILPHLLNLYNCTSSAVDYEIYAPDGTFEDPLMCAQGVKQIKSAFYSIPKV 361
           ++   P+S +I+PHLLN+Y   ++A D+EIYA   TFEDPLM A GVKQIKSAFY++PK+
Sbjct: 4   EKAASPVSRHIMPHLLNIYGSCATARDFEIYAAHATFEDPLMRAHGVKQIKSAFYTLPKL 63

Query: 362 FSEGKMGEYTVHENMIGPGTGEINIDNVQHYKLLGRQIDMVSLIKLQVKDGKVVRHEDLW 541
           F E K+ EYT+ EN   PG  EI IDN QHYK LGR ID+ SLI L V+DGKVV+H+D W
Sbjct: 64  FGESKIVEYTITENETAPGKVEILIDNKQHYKFLGRAIDLASLITLDVEDGKVVKHQDWW 123

Query: 542 DKKPLWNRTT 571
           DKKPL NR T
Sbjct: 124 DKKPLKNRDT 133


>tr|A9RQ63|A9RQ63_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160371 PE=4 SV=1
          Length = 309

 Score =  162 bits (411), Expect = 9e-39
 Identities = 75/112 (66%), Positives = 91/112 (81%)
 Frame = +2

Query: 236 YNCTSSAVDYEIYAPDGTFEDPLMCAQGVKQIKSAFYSIPKVFSEGKMGEYTVHENMIGP 415
           YNCT++A D++IYAP+ TFEDPLM A GV QIKSAFY+IPKVF EG++ EYTV E    P
Sbjct: 78  YNCTATAADFDIYAPNATFEDPLMQAHGVAQIKSAFYAIPKVFKEGRIVEYTVEEEEKTP 137

Query: 416 GTGEINIDNVQHYKLLGRQIDMVSLIKLQVKDGKVVRHEDLWDKKPLWNRTT 571
            +GEI + N+QHYK++ + I+M SLIKLQV+ GKVVRHEDLWDK PLWNR T
Sbjct: 138 TSGEIRLHNLQHYKVMSKHIEMRSLIKLQVEGGKVVRHEDLWDKNPLWNRNT 189