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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947108
Clone id YMU02A01NGRL0014_N03
Library
Length 250
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_N03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGGAGACAATGAGTGGGGATGAGTTCAGAGCCATTCTCTCGGAGTTCACTGAAATTCCT
GCCCAGAATAGAGTGCCTTCATCTGCACCACAGCCTGTCGCAGCTTAAATGAGATGTGAG
ATGCCCTTGTACATTTCTTGTCCATTGTGAAGATCATTACGTGGATTGGATGTAATTTTT
TTGTCAGCATATGCACTGTAATATTCTAAGTACTTGTGGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q655S1
Definition sp|Q655S1|FTSH2_ORYSJ Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica
Align length 35
Score (bit) 54.7
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947108|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_N03, 5'
         (220 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q655S1|FTSH2_ORYSJ Cell division protease ftsH homolog 2, chl...    55   1e-07
sp|O80860|FTSH2_ARATH Cell division protease ftsH homolog 2, chl...    53   4e-07
sp|Q8W585|FTSH8_ARATH Cell division protease ftsH homolog 8, chl...    52   9e-07
sp|Q67WJ2|FTSH6_ORYSJ Cell division protease ftsH homolog 6, chl...    36   0.067
sp|Q1PDW5|FTSH6_ARATH Cell division protease ftsH homolog 6, chl...    36   0.067
sp|P49825|FTSH_ODOSI Cell division protease ftsH homolog OS=Odon...    33   0.33 
sp|P51327|FTSH_PORPU Cell division protease ftsH homolog OS=Porp...    32   0.97 
sp|Q55700|FTSH1_SYNY3 Cell division protease ftsH homolog 1 OS=S...    32   0.97 
sp|Q1XDF9|FSTH_PORYE Cell division protease ftsH homolog OS=Porp...    32   0.97 
sp|O78516|FTSH_GUITH Cell division protease ftsH homolog OS=Guil...    32   1.3  
sp|Q9USY0|MU131_SCHPO Meiotically up-regulated gene 131 protein ...    29   8.2  
sp|A6USA0|RRMJ_METVS Ribosomal RNA large subunit methyltransfera...    29   8.3  

>sp|Q655S1|FTSH2_ORYSJ Cell division protease ftsH homolog 2,
           chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2
           PE=3 SV=1
          Length = 676

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPVAA 105
           KET+SGDEFRAILSEFTEIP +NRVP + P  + A
Sbjct: 642 KETLSGDEFRAILSEFTEIPVENRVPPATPAALPA 676


>sp|O80860|FTSH2_ARATH Cell division protease ftsH homolog 2,
           chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
          Length = 695

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 7/41 (17%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPS-------SAPQPVA 102
           KET+ GDEFRAILSEFTEIP +NRVPS       SAP P A
Sbjct: 654 KETIGGDEFRAILSEFTEIPPENRVPSSTTTTPASAPTPAA 694


>sp|Q8W585|FTSH8_ARATH Cell division protease ftsH homolog 8,
           chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1
          Length = 685

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/28 (89%), Positives = 26/28 (92%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSS 84
           KETMSGDEFRAILSEFTEIP +NRV SS
Sbjct: 647 KETMSGDEFRAILSEFTEIPPENRVASS 674


>sp|Q67WJ2|FTSH6_ORYSJ Cell division protease ftsH homolog 6,
           chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6
           PE=3 SV=1
          Length = 686

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPVA 102
           KET+ GDEFRAILSE  +I  + R  ++  Q +A
Sbjct: 651 KETLGGDEFRAILSEHVDIGKERRETAARTQQLA 684


>sp|Q1PDW5|FTSH6_ARATH Cell division protease ftsH homolog 6,
           chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1
          Length = 688

 Score = 35.8 bits (81), Expect = 0.067
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIP 60
           KET++GDEFRAILSE+T+ P
Sbjct: 652 KETLTGDEFRAILSEYTDQP 671


>sp|P49825|FTSH_ODOSI Cell division protease ftsH homolog
           OS=Odontella sinensis GN=ftsH PE=3 SV=1
          Length = 644

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQN 69
           KETM GDEFR +LS +T +P +N
Sbjct: 614 KETMDGDEFRELLSTYTILPNKN 636


>sp|P51327|FTSH_PORPU Cell division protease ftsH homolog
           OS=Porphyra purpurea GN=ftsH PE=3 SV=1
          Length = 628

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQN 69
           KET+ G+EFR I+ E+T IP +N
Sbjct: 600 KETIEGNEFRHIVKEYTAIPEKN 622


>sp|Q55700|FTSH1_SYNY3 Cell division protease ftsH homolog 1
           OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3
           SV=1
          Length = 627

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRV 75
           KET+ G+EFR I++E+ E+P + ++
Sbjct: 599 KETIDGEEFRQIVAEYAEVPVKEQL 623


>sp|Q1XDF9|FSTH_PORYE Cell division protease ftsH homolog
           OS=Porphyra yezoensis GN=ftsH PE=3 SV=1
          Length = 628

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQN 69
           KET+ G+EFR I+ E+T IP +N
Sbjct: 600 KETIEGNEFRDIVKEYTAIPEKN 622


>sp|O78516|FTSH_GUITH Cell division protease ftsH homolog
           OS=Guillardia theta GN=ftsH PE=3 SV=1
          Length = 631

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIP 60
           KET+ GDEFR I+ +FT +P
Sbjct: 600 KETIDGDEFRQIVGDFTSLP 619
tr_hit_id A7PJL7
Definition tr|A7PJL7|A7PJL7_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera
Align length 33
Score (bit) 59.7
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947108|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_N03, 5'
         (220 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PJL7|A7PJL7_VITVI Chromosome chr12 scaffold_18, whole genom...    60   7e-08
tr|A5AER7|A5AER7_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|Q2PEV7|Q2PEV7_TRIPR Putative zinc dependent protease OS=Trifo...    57   6e-07
tr|O99018|O99018_CAPAN Chloroplast protease OS=Capsicum annuum G...    57   6e-07
tr|Q0DA88|Q0DA88_ORYSJ Os06g0669400 protein (Fragment) OS=Oryza ...    55   2e-06
tr|A6MZA7|A6MZA7_ORYSI Cell division protein ftsh (Fragment) OS=...    55   2e-06
tr|A2YG12|A2YG12_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|Q9LMH8|Q9LMH8_ARATH T2D23.13 protein OS=Arabidopsis thaliana ...    52   1e-05
tr|Q9ZP50|Q9ZP50_TOBAC FtsH-like protein Pftf OS=Nicotiana tabac...    52   2e-05
tr|B1P2H3|B1P2H3_MAIZE Filamentation temperature-sensitive H 2A ...    51   3e-05
tr|B6T8X2|B6T8X2_MAIZE FtsH6-Zea mays FtsH protease OS=Zea mays ...    50   4e-05
tr|B1P2H4|B1P2H4_MAIZE Filamentation temperature-sensitive H 2B ...    50   4e-05
tr|A9STZ2|A9STZ2_PHYPA Predicted protein OS=Physcomitrella paten...    50   4e-05
tr|Q2PEX6|Q2PEX6_TRIPR Putative zinc dependent protease OS=Trifo...    49   2e-04
tr|A0EXV4|A0EXV4_9FABA Putative FtsH protease (Fragment) OS=Ammo...    49   2e-04
tr|A9T7H1|A9T7H1_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|Q6I661|Q6I661_CITLA FtsH-like protein Pftf (Fragment) OS=Citr...    43   0.007
tr|A9NQE3|A9NQE3_PICSI Putative uncharacterized protein OS=Picea...    43   0.007
tr|A0EY56|A0EY56_9FABA Putative FtsH-2 protease (Fragment) OS=Am...    42   0.012
tr|Q4W5U8|Q4W5U8_SOLLC FtsH protease OS=Solanum lycopersicum GN=...    40   0.045
tr|A2BQM9|A2BQM9_PROMS FtsH ATP-dependent protease-like protein ...    38   0.22 
tr|A3YZS0|A3YZS0_9SYNE FtsH ATP-dependent protease-like protein ...    38   0.22 
tr|Q2JHR8|Q2JHR8_SYNJB Metalloprotease, ATP-dependent, FtsH fami...    38   0.29 
tr|A8J6C7|A8J6C7_CHLRE Membrane AAA-metalloprotease OS=Chlamydom...    38   0.29 
tr|Q3AJP0|Q3AJP0_SYNSC ATP-dependent metalloprotease FtsH OS=Syn...    37   0.38 
tr|Q3AY02|Q3AY02_SYNS9 FtsH peptidase homologue, chloroplast. Me...    37   0.50 
tr|Q31BD4|Q31BD4_PROM9 FtsH peptidase homologue, chloroplast. Me...    37   0.50 
tr|Q067G5|Q067G5_9SYNE Peptidase M41, FtsH OS=Synechococcus sp. ...    37   0.50 
tr|A7PMU5|A7PMU5_VITVI Chromosome chr14 scaffold_21, whole genom...    37   0.50 
tr|A5AIR5|A5AIR5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.50 

>tr|A7PJL7|A7PJL7_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018790001
           PE=4 SV=1
          Length = 695

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 27/33 (81%), Positives = 30/33 (90%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPV 99
           KETM+GDEFRAILSEF EIPA+NRVP+S P PV
Sbjct: 661 KETMTGDEFRAILSEFVEIPAENRVPASVPSPV 693


>tr|A5AER7|A5AER7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000418 PE=4 SV=1
          Length = 694

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 27/33 (81%), Positives = 30/33 (90%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPV 99
           KETM+GDEFRAILSEF EIPA+NRVP+S P PV
Sbjct: 660 KETMTGDEFRAILSEFVEIPAENRVPASVPSPV 692


>tr|Q2PEV7|Q2PEV7_TRIPR Putative zinc dependent protease
           OS=Trifolium pratense PE=2 SV=1
          Length = 702

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPV 99
           KET+SGDEFRA+LSEFTEIP +NRVP + P PV
Sbjct: 668 KETLSGDEFRALLSEFTEIPVENRVPPATPLPV 700


>tr|O99018|O99018_CAPAN Chloroplast protease OS=Capsicum annuum
           GN=cacp PE=2 SV=1
          Length = 693

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 25/34 (73%), Positives = 30/34 (88%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPVA 102
           +ETM+GDEFRAILSEF EIPA+NRVP++ P P A
Sbjct: 659 QETMTGDEFRAILSEFVEIPAENRVPAAVPTPAA 692


>tr|Q0DA88|Q0DA88_ORYSJ Os06g0669400 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os06g0669400 PE=4 SV=1
          Length = 609

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPVAA 105
           KET+SGDEFRAILSEFTEIP +NRVP + P  + A
Sbjct: 575 KETLSGDEFRAILSEFTEIPVENRVPPATPAALPA 609


>tr|A6MZA7|A6MZA7_ORYSI Cell division protein ftsh (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 177

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPVAA 105
           KET+SGDEFRAILSEFTEIP +NRVP + P  + A
Sbjct: 143 KETLSGDEFRAILSEFTEIPVENRVPPATPAALPA 177


>tr|A2YG12|A2YG12_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24055 PE=4 SV=1
          Length = 676

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQPVAA 105
           KET+SGDEFRAILSEFTEIP +NRVP + P  + A
Sbjct: 642 KETLSGDEFRAILSEFTEIPVENRVPPATPAALPA 676


>tr|Q9LMH8|Q9LMH8_ARATH T2D23.13 protein OS=Arabidopsis thaliana
           GN=T2D23.13 PE=4 SV=1
          Length = 88

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 25/28 (89%), Positives = 26/28 (92%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSS 84
           KETMSGDEFRAILSEFTEIP +NRV SS
Sbjct: 50  KETMSGDEFRAILSEFTEIPPENRVASS 77


>tr|Q9ZP50|Q9ZP50_TOBAC FtsH-like protein Pftf OS=Nicotiana tabacum
           GN=Pftf PE=2 SV=1
          Length = 693

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAPQP 96
           KETM+GDEFRAILSEF EIPA+NRV    P P
Sbjct: 659 KETMTGDEFRAILSEFVEIPAENRVAPVVPTP 690


>tr|B1P2H3|B1P2H3_MAIZE Filamentation temperature-sensitive H 2A
           OS=Zea mays GN=FtsH2A PE=2 SV=1
          Length = 677

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +1

Query: 1   KETMSGDEFRAILSEFTEIPAQNRVPSSAP 90
           KET++GDEFRAILSEF EIP +NRVP + P
Sbjct: 642 KETLAGDEFRAILSEFVEIPVENRVPPATP 671