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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947110
Clone id YMU02A01NGRL0014_N06
Library
Length 221
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_N06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGTCCTGGAAGAAAAGGGGGGCTTACCTACTAAATATCTGACGTGGCAGAAGGGATCTC
CCAGAGACAAGAAGGGATGATATATTGGAACGACAAGCAGGGAGGAGAAAGAATTGGGCA
AAAATGATGAATAGAATGAATTGGGCCTCGGCCCTCGAGAAGCTTTCAAGACCCTTGTCG
GGCGCCTCGGCCCCCGAGAGGCTTTCAAGACGATTCTTTTG
■■Homology search results ■■ -
sp_hit_id Q3T0Z5
Definition sp|Q3T0Z5|LENG1_BOVIN Leukocyte receptor cluster member 1 homolog OS=Bos taurus
Align length 77
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947110|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_N06, 5'
         (221 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3T0Z5|LENG1_BOVIN Leukocyte receptor cluster member 1 homolo...    31   1.7  
sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lip...    29   6.3  

>sp|Q3T0Z5|LENG1_BOVIN Leukocyte receptor cluster member 1 homolog
           OS=Bos taurus GN=LENG1 PE=2 SV=1
          Length = 263

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
 Frame = +1

Query: 1   KSWKKRGAYLLNI*RGRRDLPETRRDD-------ILERQAGRRKNWAKMMNRMNWASALE 159
           KSW  R     N+ R RRD    R ++       +L +Q  R +   K     NW  ALE
Sbjct: 7   KSWHVRNKD--NVARVRRDEARAREEEKERERRVLLAQQEARTEFLRKKARHQNWLPALE 64

Query: 160 KLSRPLSGASAPERLSR 210
                  G+S P  L R
Sbjct: 65  AAEAGAPGSSGPVDLFR 81


>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia
           lipolytica GN=BBP PE=3 SV=1
          Length = 605

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 58  LPETRRDDILERQAGRRK-NWAKMMNRMNWASALEKLSRPLSGASAPER 201
           +P TR DD  +RQ GRRK  W+   N++   + L ++   L+G   PE+
Sbjct: 49  VPPTRHDDGTKRQPGRRKQRWSHGENKV---ADLLQMPTALTGHLTPEQ 94
tr_hit_id B0E1V3
Definition tr|B0E1V3|B0E1V3_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 53
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947110|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_N06, 5'
         (221 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0E1V3|B0E1V3_LACBS Predicted protein OS=Laccaria bicolor (st...    35   2.5  
tr|B0DGB0|B0DGB0_LACBS Predicted protein OS=Laccaria bicolor (st...    35   2.5  
tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subs...    33   7.2  
tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.2  
tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.2  

>tr|B0E1V3|B0E1V3_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_335269 PE=4 SV=1
          Length = 275

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 156 EGRGPIHS---IHHFCPILSPPCLSFQYIIPSCLWEIPSATSDI**VSPPFLP 7
           +GRGP H+   +HH  P    PCL   + +P     IPS  S +    PPFLP
Sbjct: 197 DGRGPSHTPSPLHHSLP----PCLLPPFFVPPPCSTIPSPLSSL----PPFLP 241


>tr|B0DGB0|B0DGB0_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_328885 PE=4 SV=1
          Length = 192

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 156 EGRGPIHS---IHHFCPILSPPCLSFQYIIPSCLWEIPSATSDI**VSPPFLP 7
           +GRGP H+   +HH  P    PCL   +++P     IPS  S +    PPFLP
Sbjct: 114 DGRGPSHTPSPLHHSLP----PCLLPPFLVPPPCSTIPSPLSAL----PPFLP 158


>tr|Q53N99|Q53N99_ORYSJ Os11g0245200 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0245200 PE=4 SV=1
          Length = 897

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 138 HSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           +S    CP L P CLS QY+ P+C   +P
Sbjct: 352 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 380


>tr|B8BJW1|B8BJW1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35675 PE=4 SV=1
          Length = 954

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 138 HSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           +S    CP L P CLS QY+ P+C   +P
Sbjct: 427 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 455


>tr|A3CA56|A3CA56_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032178 PE=4 SV=1
          Length = 893

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 138 HSIHHFCPILSPPCLSFQYIIPSCLWEIP 52
           +S    CP L P CLS QY+ P+C   +P
Sbjct: 352 YSTQSICPGLPPTCLSDQYLSPNCTCAVP 380