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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947113
Clone id YMU02A01NGRL0014_N10
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_N10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAGCTCAGGCCACAGCACCGCTCTCTTCTCCTGAGCATTCTCTCTTCTGCAGGACGATT
GTAGTTCTTGCTCCTGCTAAGTTCAGGTAGTCAAGCAATGGCGACCATGTCTGCGTCTCT
AGCAGTGAGCGCCCCGGGATGTGCCCCAGCAGAGCTGAGCCTCTCACAGAAGAGCTTCTC
GGGCCTCAAGGCCTCCACCATCGTCGCGCCCAAGTGTGGCAATCCCCTCGCCGTTTCCAA
TGGCAGCCGTGTCAGCGCCATGCTGGTGTGGAAGCCGTACGACAACAAGAAGTTCGAGAC
TCTGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGCAAAGCAGGTGGACTACATGGT
GCGACAGAACTTTACTCCCTGCATCGAGTTCGACAACATTGGGAGCGTGTACCGGGAGCA
CTTCCACGGGAGCGGGTACTACGATGGGAGGTACTGGGTGATGTGGAAGCTGCCCATGTT
TGGCTGCACCGACTCCGCCGCCGTGCTGCGCGAGATCACGGAGTGCGCCAAGGAGTACCC
CAAGGCATTCATCCGGGTGCTCGGCTTCGATGCCAAGCGGCAAGTTCAGGTTGCTGGCTT
CCT
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 174
Score (bit) 182.0
E-value 1.0e-45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947113|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_N10, 5'
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   180   6e-45
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   179   7e-45
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   178   2e-44
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   178   2e-44
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   177   4e-44
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   177   4e-44
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   177   5e-44
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   175   1e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   175   2e-43
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   174   4e-43
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   174   4e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   173   5e-43
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   173   7e-43
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   173   7e-43
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   173   7e-43
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   172   2e-42
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   171   2e-42
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   170   4e-42
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   170   4e-42
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   169   8e-42
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   169   8e-42
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   169   1e-41
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   169   1e-41
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   168   2e-41
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   168   2e-41
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   168   2e-41

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  182 bits (462), Expect = 1e-45
 Identities = 95/174 (54%), Positives = 117/174 (67%), Gaps = 9/174 (5%)
 Frame = +2

Query: 107 MSASLAVSAPGCAPAELSLSQKS----FSGLKASTI--VAPKCGNPLA--VSNGSRVSAM 262
           M+ S+  SA   A +  S +Q S    F+ LK+++   V  K  N +    SNG RV  M
Sbjct: 1   MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60

Query: 263 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGY 439
            VW P   KKFETLSYLP LSSEQ+AK+VDY++R+N  PC+EF+   G VYREH    GY
Sbjct: 61  QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120

Query: 440 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           YDGRYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQVQ+  F
Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISF 174


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  180 bits (456), Expect = 6e-45
 Identities = 91/173 (52%), Positives = 115/173 (66%), Gaps = 5/173 (2%)
 Frame = +2

Query: 98  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 265
           MA++S+S   +       + SL+   F+GLK++    V  K  N  +   SNG RV  M 
Sbjct: 1   MASISSSAIATVNRTTSTQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 266 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 442
           VW P   KK+ETLSYLP LS E ++K++DY++R  + PC+EF+   G VYREH H  GYY
Sbjct: 60  VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119

Query: 443 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD  RQVQ   F
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISF 172


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  179 bits (455), Expect = 7e-45
 Identities = 89/170 (52%), Positives = 112/170 (65%), Gaps = 5/170 (2%)
 Frame = +2

Query: 107 MSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWK 274
           M++S+  SA   A    +     F+GLK+S       K  N +    SNG RV+ M VW 
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 275 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 451
           P   KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 452 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISF 170


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
           1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
           PE=1 SV=1
          Length = 181

 Score =  178 bits (452), Expect = 2e-44
 Identities = 91/169 (53%), Positives = 116/169 (68%), Gaps = 5/169 (2%)
 Frame = +2

Query: 110 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 277
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 278 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 454
              KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 455 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISF 170


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  178 bits (451), Expect = 2e-44
 Identities = 91/169 (53%), Positives = 115/169 (68%), Gaps = 5/169 (2%)
 Frame = +2

Query: 110 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 277
           S+  + +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMFSSTAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 278 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 454
              KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 455 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISF 170


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
           3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
           PE=1 SV=2
          Length = 181

 Score =  177 bits (449), Expect = 4e-44
 Identities = 91/169 (53%), Positives = 115/169 (68%), Gaps = 5/169 (2%)
 Frame = +2

Query: 110 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 277
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K    +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPP 61

Query: 278 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 454
              KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 455 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISF 170


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
          Length = 181

 Score =  177 bits (449), Expect = 4e-44
 Identities = 90/169 (53%), Positives = 115/169 (68%), Gaps = 5/169 (2%)
 Frame = +2

Query: 110 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 277
           S+ L+ +A   +PA+ ++    F+GLK+S+   V  K  N +   VSNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPP 61

Query: 278 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 454
              KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGRY
Sbjct: 62  VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 455 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           W MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQVQ   F
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISF 170


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  177 bits (448), Expect = 5e-44
 Identities = 94/173 (54%), Positives = 111/173 (64%), Gaps = 5/173 (2%)
 Frame = +2

Query: 98  MATMSASLAVSAPGCAPAELSLSQKSF----SGLKASTIVAPKCGNPLAVSNGSRVSAML 265
           MA++ AS AV  P  A A  +          +GLKA              +NGSRVS M 
Sbjct: 1   MASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQ 60

Query: 266 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYD 445
           VW+PY+N KFETLSYLP LS + +AKQ+DY+++  + PCIEFD  G+V RE     GYYD
Sbjct: 61  VWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYD 120

Query: 446 GRYWVMWKLPMFGCTDSAAVLREITECAKEY-PKAFIRVLGFDAKRQVQVAGF 601
           GRYW MWKLPMFGCTDSA+VLREI EC K Y  K +IR LGFD  RQVQ A F
Sbjct: 121 GRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASF 173


>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain
           F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1
          Length = 181

 Score =  175 bits (444), Expect = 1e-43
 Identities = 89/169 (52%), Positives = 113/169 (66%), Gaps = 5/169 (2%)
 Frame = +2

Query: 110 SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 277
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPP 61

Query: 278 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 454
              KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGRY
Sbjct: 62  VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 455 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           W MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQVQ   F
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISF 170


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  175 bits (443), Expect = 2e-43
 Identities = 91/173 (52%), Positives = 117/173 (67%), Gaps = 4/173 (2%)
 Frame = +2

Query: 95  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV-SNGSRVSAML 265
           +M +      VSA   APA+  +    F+GLK+S+   V  K  +  ++ SNG RV  M 
Sbjct: 4   SMISSGTVATVSADRPAPAQARMVAP-FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQ 62

Query: 266 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 442
           VW P   KKFETLSYLP LSSE +AK+VDY++R+N+ PC+EF+   G VYRE+    GYY
Sbjct: 63  VWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYY 122

Query: 443 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           DGRYW MWKLPMFGCTDS+ VL+E+ E  K YP++FIR++GFD  RQVQ   F
Sbjct: 123 DGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISF 175
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 168
Score (bit) 294.0
E-value 3.0e-78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947113|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_N10, 5'
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   294   3e-78
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   206   1e-51
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   204   3e-51
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   202   2e-50
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   201   3e-50
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   201   4e-50
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   199   8e-50
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   188   2e-46
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   187   4e-46
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   187   4e-46
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   183   6e-45
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   181   2e-44
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   180   5e-44
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   179   8e-44
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   178   2e-43
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   176   7e-43
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   176   9e-43
tr|B3H5S2|B3H5S2_ARATH Uncharacterized protein At5g38410.3 OS=Ar...   175   2e-42
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   175   2e-42

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  294 bits (752), Expect = 3e-78
 Identities = 140/168 (83%), Positives = 154/168 (91%)
 Frame = +2

Query: 98  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKP 277
           MATM A++AVSAP CA A  SLS KSFSGLKA+T+ APKC NPLA+SNGSR+SAMLVWKP
Sbjct: 1   MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 278 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYW 457
           YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW
Sbjct: 60  YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 458 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           +MWKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQVQVAGF
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGF 167


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  206 bits (523), Expect = 1e-51
 Identities = 100/172 (58%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
 Frame = +2

Query: 95  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWK 274
           A A +S S+  +A   A    S S K FSGLK++T+ A K     +V NGSRV  M VW 
Sbjct: 2   ASAVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWN 61

Query: 275 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 445
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 446 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GF
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGF 173


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  204 bits (519), Expect = 3e-51
 Identities = 99/172 (57%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
 Frame = +2

Query: 95  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWK 274
           A A +S S+  +A   +    S S K FSGLK++T+ A K     +V NGSRV  M VW 
Sbjct: 2   ASAVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWN 61

Query: 275 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 445
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 446 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GF
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGF 173


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  202 bits (513), Expect = 2e-50
 Identities = 97/165 (58%), Positives = 118/165 (71%), Gaps = 3/165 (1%)
 Frame = +2

Query: 116 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 295
           SL  +A   A +  S + K+FSGLK +T+ + K     AV NGSRV  M VW P    KF
Sbjct: 14  SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 296 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 466
           ET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 467 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GF
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGF 178


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  201 bits (511), Expect = 3e-50
 Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 3/165 (1%)
 Frame = +2

Query: 116 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 295
           S+ V++   A +  S S K+FSGLK++T+   K     +V NGSRV  M VW P    KF
Sbjct: 14  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 296 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 466
           ET SYLP LS +QIA+QVDYM++QN  PCIEFD +G+V R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 467 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           KLPMFGCTDS+ VLREI EC   YP  ++RVLGFD+K+QVQ+ GF
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGF 178


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  201 bits (510), Expect = 4e-50
 Identities = 101/174 (58%), Positives = 127/174 (72%), Gaps = 6/174 (3%)
 Frame = +2

Query: 98  MATMSASLAVS-APGC--APAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLV 268
           ++T+ A +A+  A  C  AP+E S S K+FSGLK++T+ + K     +V NGSRV  M V
Sbjct: 36  VSTVVAPVALGGASSCVGAPSESS-SVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQV 94

Query: 269 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGY 439
           W P    KFET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGY
Sbjct: 95  WNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGY 154

Query: 440 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           YDGRYW MWKLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GF
Sbjct: 155 YDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGF 208


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  199 bits (507), Expect = 8e-50
 Identities = 95/165 (57%), Positives = 120/165 (72%), Gaps = 3/165 (1%)
 Frame = +2

Query: 116 SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 295
           SLA ++P     + S S K+FSGLK++T+ + +     +V NGSRV  M VW P    KF
Sbjct: 14  SLAAASPAAVSRD-STSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 296 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 466
           ET SYLP L+ ++IAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 73  ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 467 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GF
Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGF 177


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  189 bits (479), Expect = 1e-46
 Identities = 96/175 (54%), Positives = 116/175 (66%), Gaps = 7/175 (4%)
 Frame = +2

Query: 98  MATMSASLAVSAP----GCAPAEL---SLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVS 256
           MA+  A+ AV AP      +PA     S + K+FSGLK++T+ + K  N  +V NGSRV 
Sbjct: 1   MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 257 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 436
            M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 437 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           YYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GF
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGF 175


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  188 bits (477), Expect = 2e-46
 Identities = 95/176 (53%), Positives = 117/176 (66%), Gaps = 7/176 (3%)
 Frame = +2

Query: 95  AMATMSASLAVSAP---GCAPAELSLSQ----KSFSGLKASTIVAPKCGNPLAVSNGSRV 253
           AMA++ A+  V AP     A + +S S+    K+FSGLK++T+ + K     +V NGSRV
Sbjct: 2   AMASIVAATTVVAPTAFAAASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRV 61

Query: 254 SAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGS 433
             M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    
Sbjct: 62  QCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSP 121

Query: 434 GYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           GYYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GF
Sbjct: 122 GYYDGRYWTMWKLPMFGCNDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGF 177


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  187 bits (475), Expect = 4e-46
 Identities = 92/163 (56%), Positives = 111/163 (68%)
 Frame = +2

Query: 113 ASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKK 292
           A+ A S+   + +E S S K+FSGLK+ST+ + K  +  +V NGSRV  M VW P    K
Sbjct: 14  AAFAASSSAVSTSE-STSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTK 72

Query: 293 FETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKL 472
           FET SYLP LS + IAKQVDYM++Q   PC+EFDN   V R +    GYYDGRYW MWKL
Sbjct: 73  FETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKL 132

Query: 473 PMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGF 601
           PMFGC D A VLREI EC K +P  F+RVLGFD  +QVQ+ GF
Sbjct: 133 PMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGF 175