DK947136
Clone id YMU02A01NGRL0014_O18
Library
Length 228
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_O18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGAATCAACGCAGAGTGGCCATGGCGGACCCGGGGGTGGTCACGGAGGTCAT
CACTAGATCCAGCCTCTTCTCCTACCCTCACTCTATACATATCATGAGTACGTGCTCGCT
TTGAGCGCTGAGCTCCCCTTCCTTCCTGTTTGTAAGTATTCGAATGTTCGAAAGGTGAAT
AAAGTAGGCTAATATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O74381
Definition sp|O74381|POF9_SCHPO F-box protein pof9 OS=Schizosaccharomyces pombe
Align length 28
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947136|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_O18, 5'
(168 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O74381|POF9_SCHPO F-box protein pof9 OS=Schizosaccharomyces p... 30 2.9
sp|O94892|ZN432_HUMAN Zinc finger protein 432 OS=Homo sapiens GN... 30 4.9

>sp|O74381|POF9_SCHPO F-box protein pof9 OS=Schizosaccharomyces
pombe GN=pof9 PE=1 SV=1
Length = 467

Score = 30.4 bits (67), Expect = 2.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2

Query: 2 ADPGVVTEVITRSSLFSYPHSIHIMSTC 85
+DP +V++ T ++ S PH IH TC
Sbjct: 383 SDPSIVSDPRTARNIVSIPHQIHFSGTC 410


>sp|O94892|ZN432_HUMAN Zinc finger protein 432 OS=Homo sapiens
GN=ZNF432 PE=1 SV=1
Length = 652

Score = 29.6 bits (65), Expect = 4.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3

Query: 154 LYSPFEHSNTYKQEGRGAQRSKRARTHDMYRVRVGEEAGSS----DDLRDHPRV 5
LYS + S + K +Q SK RTH++ + V E G + L DH RV
Sbjct: 173 LYSAAKFSVSTKANSTKSQVSKHQRTHEIEKNHVCSECGKAFVKKSQLTDHERV 226


tr_hit_id Q6DEM1
Definition tr|Q6DEM1|Q6DEM1_DANRE Snrp70 protein (Fragment) OS=Danio rerio
Align length 40
Score (bit) 33.1
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947136|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_O18, 5'
(168 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6DEM1|Q6DEM1_DANRE Snrp70 protein (Fragment) OS=Danio rerio ... 33 7.1

>tr|Q6DEM1|Q6DEM1_DANRE Snrp70 protein (Fragment) OS=Danio rerio
GN=snrnp70 PE=2 SV=1
Length = 306

Score = 33.1 bits (74), Expect = 7.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3

Query: 121 KQEGRGAQRSKRARTHDMYRVRVGEEAGSSDDLRDHPRVR 2
++ R +R +R R+H+ R G+EAG S R+ R R
Sbjct: 251 RRRSRSRERRRRTRSHERERAAAGDEAGGSSRRRERERER 290