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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947141
Clone id YMU02A01NGRL0014_O24
Library
Length 318
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_O24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGTGATGCTCCAGTCAGGAAGTTTACATCATAGACCTTAGCGGCGAAAGGAAACTCAA
AAGTGTGTCTCCTCATCATCTCCATATTTGTCTCCTCATCACACACGTGCATGTGCCCAC
ATGCAGGCACTTATACATGATATTATGTGTGTGTGTGTGTTGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGACGGCTAATGTTTTCCTAACTGAAGAAAACAAGGGCAC
ACGCCGGTTTTTATGTCAAAATTTGAAGCATTTGCTGGTATTTACACCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947141|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_O24, 5'
         (288 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q4SEV4
Definition tr|Q4SEV4|Q4SEV4_TETNG Chromosome undetermined SCAF14611, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 47
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947141|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_O24, 5'
         (288 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4SEV4|Q4SEV4_TETNG Chromosome undetermined SCAF14611, whole ...    35   1.9  
tr|Q8WYX9|Q8WYX9_HUMAN Putative uncharacterized protein pp10122 ...    33   9.3  

>tr|Q4SEV4|Q4SEV4_TETNG Chromosome undetermined SCAF14611, whole
            genome shotgun sequence OS=Tetraodon nigroviridis
            GN=GSTENG00019370001 PE=4 SV=1
          Length = 2135

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 20   EVYIIDLSGERKLKSVSPHHLHICLLITHVHVPTCRHLYMILCVCVC 160
            E+ ++DL G    ++ +P   H   LIT V V  C  + + +CVCVC
Sbjct: 1998 ELLVLDLQGTSPSRAEAPPPAHAAALITCVCVCVCVCVCVWVCVCVC 2044


>tr|Q8WYX9|Q8WYX9_HUMAN Putative uncharacterized protein pp10122
           OS=Homo sapiens GN=pp10122 PE=2 SV=1
          Length = 400

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 80  LHICLLITHVHVPTCRHLYMILCVCVC 160
           +H+C+ + +V V  C HLY+ +CVC+C
Sbjct: 66  VHVCMRV-YVCVCICVHLYVCVCVCLC 91