DK947142 |
Clone id |
YMU02A01NGRL0014_P02 |
Library |
YMU02 |
Length |
463 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_P02. 5' end sequence. |
Accession |
DK947142 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL4Contig1 |
Sequence |
CAGTGGTATCAACGCAGAGTCGCCATTACGGCCGGGGCAGTGGTATCAACGCAGAGTGGC CATTACGGCCGGGGCCCATGACTGTTGAGACCTTTTCAGAGTATCCTCCACTTGGACGGT TTGCTGTTCGTGATATGAGGCAGACTGTTGCCGTGGGAGTCATCAAGGCAGTGGAAAAGA AGGATGCCTCTGGTGCCAAGGTTACTAAGGCTGCCCTGAAGAAGAAATGAACCAGACTTT GTGATGGTAGTGGGTCTGGTAGTTTTTTGTGTGTTTTGATGCTTCGGATGATATTATCTA GAGTGTTGCAGACATGGGTTTTGGATAGACGGTGGCGCGGTTTCGCTGTGCTTCCTCCTC TTACCGGCCTTTTCTATTTACATGAACTTTGCCTAAGTAACTGATAATGTAGACAACTAT GTTGTTTTGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O24534 |
Definition |
sp|O24534|EF1A_VICFA Elongation factor 1-alpha OS=Vicia faba |
Align length |
40 |
Score (bit) |
74.7 |
E-value |
1.0e-13 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B1PID4 |
Definition |
tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) OS=Cupressus sempervirens |
Align length |
104 |
Score (bit) |
89.7 |
E-value |
6.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947142|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0014_P02, 5' (360 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) ... 90 6e-17 tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis ... 86 1e-15 tr|A9SJB4|A9SJB4_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 77 3e-13 tr|Q1X8N4|Q1X8N4_PRUAR Elongation factor 1 alpha (Fragment) OS=P... 77 4e-13 tr|Q14K72|Q14K72_PLAAC Translation elongation factor 1 alpha (Fr... 77 4e-13 tr|Q0VJA7|Q0VJA7_PLAAC Elongation factor 1 alpha (Fragment) OS=P... 77 4e-13 tr|P93272|P93272_MALDO Elongation factor 1 alpha (Fragment) OS=M... 77 4e-13 tr|B8LPU5|B8LPU5_PICSI Putative uncharacterized protein OS=Picea... 77 4e-13 tr|B8LMD8|B8LMD8_PICSI Putative uncharacterized protein OS=Picea... 77 4e-13 tr|B6V864|B6V864_PRUPE Elongation factor 1-alpha OS=Prunus persi... 77 4e-13 tr|A7PSZ7|A7PSZ7_VITVI Elongation factor 1-alpha OS=Vitis vinife... 77 4e-13 tr|A7M6H2|A7M6H2_MALDO Putative uncharacterized protein OS=Malus... 77 4e-13 tr|A5C4C2|A5C4C2_VITVI Elongation factor 1-alpha OS=Vitis vinife... 77 4e-13 tr|A5B1I3|A5B1I3_VITVI Putative uncharacterized protein OS=Vitis... 77 4e-13 tr|A5AFS1|A5AFS1_VITVI Elongation factor 1-alpha OS=Vitis vinife... 77 4e-13 tr|A9SA16|A9SA16_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 76 7e-13 tr|A9SA12|A9SA12_PHYPA Predicted protein OS=Physcomitrella paten... 76 7e-13 tr|A9SA04|A9SA04_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 76 7e-13 tr|A9RGD1|A9RGD1_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 76 7e-13 tr|A9RGA5|A9RGA5_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 76 7e-13 tr|Q9ZRP9|Q9ZRP9_MALDO Elongation factor 1-alpha OS=Malus domest... 76 1e-12 tr|Q9XEW9|Q9XEW9_LILLO Elongation factor 1-alpha OS=Lilium longi... 76 1e-12 tr|Q9SB99|Q9SB99_CICAR Elongation factor 1-alpha (Fragment) OS=C... 76 1e-12 tr|Q9M7E2|Q9M7E2_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 76 1e-12 tr|Q9AVT7|Q9AVT7_PICAB Elongation factor 1-alpha (Fragment) OS=P... 76 1e-12 tr|Q8W0W2|Q8W0W2_ELAOL Elongation factor 1-alpha OS=Elaeis oleif... 76 1e-12 tr|Q8SAT2|Q8SAT2_9POAL Elongation factor 1-alpha OS=Saccharum hy... 76 1e-12 tr|Q8SAT1|Q8SAT1_9POAL Elongation factor 1-alpha (Fragment) OS=S... 76 1e-12 tr|Q84NI8|Q84NI8_SOLTU Elongation factor 1-alpha OS=Solanum tube... 76 1e-12 tr|Q5ME93|Q5ME93_PSEMZ Translation elongation factor-1 alpha (Fr... 76 1e-12
>tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) OS=Cupressus sempervirens PE=2 SV=1 Length = 138
Score = 89.7 bits (221), Expect = 6e-17 Identities = 54/104 (51%), Positives = 65/104 (62%), Gaps = 13/104 (12%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGXXXXXXXXXXXXXRLCDGS- 178 PM VETFSEYPPLGRFAVRDMRQTVAVGVIK+VEKK+ +G L D + Sbjct: 28 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTG-AKVTKAAAKKKRSLVDCAV 86
Query: 179 -----GSGSFLCV-------LMLRMILSRVLQTWVLDRRWRGFA 274 G S+LC+ L++R ++R +QTWVLDRRW A Sbjct: 87 EEARHGHLSWLCLSRPIAQDLLVRCSVARRMQTWVLDRRWHHIA 130
>tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis thaliana PE=3 SV=1 Length = 967
Score = 85.5 bits (210), Expect = 1e-15 Identities = 52/106 (49%), Positives = 61/106 (57%), Gaps = 11/106 (10%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGXXXXXXXXXXXXXRLCDGSG 181 PM VETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKD +G + + Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG-----AKVTKAAVKKGESKD 451
Query: 182 SGSF----------LCVLMLRMILSRVLQTWVLDRRWRGFA-VLPP 286 S SF LC + R + WVLDRRWR + +LPP Sbjct: 452 SVSFITIVWYLVACLCSCFVFSPSERCSRNWVLDRRWRIYTHILPP 497
Score = 74.7 bits (182), Expect = 2e-12 Identities = 35/40 (87%), Positives = 38/40 (95%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PM VETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKD +G Sbjct: 915 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 954
>tr|A9SJB4|A9SJB4_PHYPA Elongation factor 1-alpha OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_212963 PE=3 SV=1 Length = 447
Score = 77.4 bits (189), Expect = 3e-13 Identities = 37/40 (92%), Positives = 39/40 (97%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKK+ +G Sbjct: 397 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTG 436
>tr|Q1X8N4|Q1X8N4_PRUAR Elongation factor 1 alpha (Fragment) OS=Prunus armeniaca PE=2 SV=1 Length = 85
Score = 77.0 bits (188), Expect = 4e-13 Identities = 37/40 (92%), Positives = 38/40 (95%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PM VETFSEYPPLGRFAVRDMRQTVAVGVIK+VEKKD SG Sbjct: 35 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 74
>tr|Q14K72|Q14K72_PLAAC Translation elongation factor 1 alpha (Fragment) OS=Platanus acerifolia GN=ef PE=2 SV=1 Length = 236
Score = 77.0 bits (188), Expect = 4e-13 Identities = 37/40 (92%), Positives = 38/40 (95%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PM VETFSEYPPLGRFAVRDMRQTVAVGVIK+VEKKD SG Sbjct: 186 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 225
>tr|Q0VJA7|Q0VJA7_PLAAC Elongation factor 1 alpha (Fragment) OS=Platanus acerifolia GN=efalpha PE=2 SV=1 Length = 199
Score = 77.0 bits (188), Expect = 4e-13 Identities = 37/40 (92%), Positives = 38/40 (95%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PM VETFSEYPPLGRFAVRDMRQTVAVGVIK+VEKKD SG Sbjct: 149 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 188
>tr|P93272|P93272_MALDO Elongation factor 1 alpha (Fragment) OS=Malus domestica GN=EF-1alpha PE=2 SV=1 Length = 143
Score = 77.0 bits (188), Expect = 4e-13 Identities = 37/40 (92%), Positives = 38/40 (95%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PM VETFSEYPPLGRFAVRDMRQTVAVGVIK+VEKKD SG Sbjct: 93 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 132
>tr|B8LPU5|B8LPU5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 448
Score = 77.0 bits (188), Expect = 4e-13 Identities = 37/40 (92%), Positives = 38/40 (95%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PM VETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKD +G Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTG 436
>tr|B8LMD8|B8LMD8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 167
Score = 77.0 bits (188), Expect = 4e-13 Identities = 37/40 (92%), Positives = 38/40 (95%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PM VETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKD +G Sbjct: 116 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTG 155
>tr|B6V864|B6V864_PRUPE Elongation factor 1-alpha OS=Prunus persica GN=eEF1A PE=2 SV=1 Length = 447
Score = 77.0 bits (188), Expect = 4e-13 Identities = 37/40 (92%), Positives = 38/40 (95%) Frame = +2
Query: 2 PMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASG 121 PM VETFSEYPPLGRFAVRDMRQTVAVGVIK+VEKKD SG Sbjct: 397 PMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
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