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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947143
Clone id YMU02A01NGRL0014_P05
Library
Length 257
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_P05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACCCCGCAGGTTTCACTGGCACTGACACCCTTGCTTGCGGTGCCATGGGTCACGTCATTG
GAGTGGGAGTGGTTCTTGGCCTCCGCTATATTGGTGCCATTTAAACTGTTTGGTCTCTCG
TGCCTCAGCCCTGATCTGTTTAGTACTCACCGCCTTCCTTACAGGAATCTTGCAAGAGAT
GTGTATCCTTGTACCTTGTAGCTATGATGCCTAATCATTAATTTGGCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SUI5
Definition sp|Q9SUI5|PSAK_ARATH Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana
Align length 33
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947143|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_P05, 5'
         (227 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SUI5|PSAK_ARATH Photosystem I reaction center subunit psaK,...    30   5.0  
sp|Q3SRF1|NUOH_NITWN NADH-quinone oxidoreductase subunit H OS=Ni...    30   5.0  
sp|P0AEY8|MDFA_ECOLI Multidrug translocase mdfA OS=Escherichia c...    29   6.5  
sp|P0AEY9|MDFA_ECOL6 Multidrug translocase mdfA OS=Escherichia c...    29   6.5  
sp|P0AEZ0|MDFA_ECO57 Multidrug translocase mdfA OS=Escherichia c...    29   6.5  
sp|Q5UQM9|YL426_MIMIV Uncharacterized protein L426 OS=Acanthamoe...    29   8.5  
sp|P36886|PSAK_HORVU Photosystem I reaction center subunit psaK,...    29   8.5  

>sp|Q9SUI5|PSAK_ARATH Photosystem I reaction center subunit psaK,
           chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2
          Length = 130

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 3   PAGFTGTDTLACGAMXXXXXXXXXXXXRYIGAI 101
           PAGFT  DTLACG +            + IGAI
Sbjct: 98  PAGFTLADTLACGTVGHIIGVGVVLGLKNIGAI 130


>sp|Q3SRF1|NUOH_NITWN NADH-quinone oxidoreductase subunit H
           OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
           GN=nuoH PE=3 SV=1
          Length = 356

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 7   QVSLALTPLLAVPWVTSLEWEWFLASAILVPFKLFGLSCLSPDLFSTHRLPY 162
           Q +  L  L+ +PW+T L W W     +L  F +F +S L+     T+R P+
Sbjct: 189 QHTSGLATLIGLPWLTFLNWYWL---PLLPMFVVFYVSALA----ETNRPPF 233


>sp|P0AEY8|MDFA_ECOLI Multidrug translocase mdfA OS=Escherichia coli
           (strain K12) GN=cmr PE=1 SV=1
          Length = 410

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 22  LTPLLAVPWVTSLEWE-WFLASAILVPFKLFGLSCLSPDLFST--HRLPYRNLARD 180
           L PL+   W+  L WE  F+  A L     FGL    P+  +    +L  + L RD
Sbjct: 156 LGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSLKELGRD 211


>sp|P0AEY9|MDFA_ECOL6 Multidrug translocase mdfA OS=Escherichia coli
           O6 GN=cmr PE=3 SV=1
          Length = 410

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 22  LTPLLAVPWVTSLEWE-WFLASAILVPFKLFGLSCLSPDLFST--HRLPYRNLARD 180
           L PL+   W+  L WE  F+  A L     FGL    P+  +    +L  + L RD
Sbjct: 156 LGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSLKELGRD 211


>sp|P0AEZ0|MDFA_ECO57 Multidrug translocase mdfA OS=Escherichia coli
           O157:H7 GN=cmr PE=3 SV=1
          Length = 410

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 22  LTPLLAVPWVTSLEWE-WFLASAILVPFKLFGLSCLSPDLFST--HRLPYRNLARD 180
           L PL+   W+  L WE  F+  A L     FGL    P+  +    +L  + L RD
Sbjct: 156 LGPLVGAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSLKELGRD 211


>sp|Q5UQM9|YL426_MIMIV Uncharacterized protein L426 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_L426 PE=3 SV=1
          Length = 227

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 186 IHISCKIPVRKAVSTKQIRAEAR-ETKQFKWHQYSGGQE 73
           IH  CKI   K     + R +A+ + KQ KW+   GG+E
Sbjct: 43  IHEECKICFNKRAKLYRERNKAKLKEKQHKWYHKGGGKE 81


>sp|P36886|PSAK_HORVU Photosystem I reaction center subunit psaK,
           chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1
          Length = 131

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 3   PAGFTGTDTLACGAM 47
           PAGFT  DTLACGA+
Sbjct: 94  PAGFTLADTLACGAV 108
tr_hit_id Q5PGN4
Definition tr|Q5PGN4|Q5PGN4_SALPA Multidrug translocase MdfA OS=Salmonella paratyphi A
Align length 57
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947143|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_P05, 5'
         (227 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5PGN4|Q5PGN4_SALPA Multidrug translocase MdfA OS=Salmonella ...    34   3.2  
tr|B5BBX1|B5BBX1_SALPK Multidrug translocase MdfA OS=Salmonella ...    34   3.2  
tr|A9RF28|A9RF28_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   4.2  
tr|A9NT92|A9NT92_PICSI Putative uncharacterized protein OS=Picea...    34   4.2  
tr|A9NMK3|A9NMK3_PICSI Putative uncharacterized protein OS=Picea...    33   5.5  
tr|B6A183|B6A183_RHILW Putative uncharacterized protein OS=Rhizo...    33   7.1  
tr|B7DH24|B7DH24_DESSA Transcriptional regulator, AraC family OS...    33   9.3  
tr|A9SFV4|A9SFV4_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.3  

>tr|Q5PGN4|Q5PGN4_SALPA Multidrug translocase MdfA OS=Salmonella
           paratyphi A GN=mdfA PE=4 SV=1
          Length = 410

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 22  LTPLLAVPWVTSLEWE-WFLASAILVPFKLFGLSCLSPDLFSTHR---LPYRNLARD 180
           L PL+   WV  L WE  F+  A L     FGL C  P+  +T R   L ++ L RD
Sbjct: 156 LGPLVGAAWVHVLPWEGMFILFAALAAIAFFGLQCAMPET-ATRRGETLSFKALGRD 211


>tr|B5BBX1|B5BBX1_SALPK Multidrug translocase MdfA OS=Salmonella
           paratyphi A (strain AKU_12601) GN=SSPA1766 PE=4 SV=1
          Length = 410

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 22  LTPLLAVPWVTSLEWE-WFLASAILVPFKLFGLSCLSPDLFSTHR---LPYRNLARD 180
           L PL+   WV  L WE  F+  A L     FGL C  P+  +T R   L ++ L RD
Sbjct: 156 LGPLVGAAWVHVLPWEGMFILFAALAAIAFFGLQCAMPET-ATRRGETLSFKALGRD 211


>tr|A9RF28|A9RF28_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_28496 PE=4 SV=1
          Length = 128

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   PAGFTGTDTLACGAM 47
           PAGFT TDTLACGAM
Sbjct: 101 PAGFTATDTLACGAM 115


>tr|A9NT92|A9NT92_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 140

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   PAGFTGTDTLACGAMXXXXXXXXXXXXRYIGAI 101
           PAGFT TDTLACG++            + IGAI
Sbjct: 108 PAGFTATDTLACGSLGHVIGVGIVLGLKAIGAI 140


>tr|A9NMK3|A9NMK3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 140

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   PAGFTGTDTLACGAMXXXXXXXXXXXXRYIGAI 101
           PAGFT TDTLACG++            + +GAI
Sbjct: 108 PAGFTATDTLACGSLGHVIGVGIVLGLKAVGAI 140


>tr|B6A183|B6A183_RHILW Putative uncharacterized protein
           OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304)
           GN=Rleg2_5161 PE=3 SV=1
          Length = 115

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 83  PLYWCHLNCLVSRASALICLVLTAFLTGILQEMCILV 193
           P +WC +  L+  A+A++ LV   F  G++  +CI++
Sbjct: 45  PWWWCWVTALLELATAVLLLVRPTFTLGVVLGVCIMI 81


>tr|B7DH24|B7DH24_DESSA Transcriptional regulator, AraC family
           OS=Desulfovibrio salexigens DSM 2638 GN=DesalDRAFT_2215
           PE=4 SV=1
          Length = 271

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 143 LNRSGLRHERPNSLNGTNIAEAKNHSHS-NDVTHGTASKGVSASETC 6
           +N+  +R+ RP S+ G  I E  N +HS  + THG  S GV  +  C
Sbjct: 1   MNKGIIRYLRPESIEGLEIQEVINSNHSFPNHTHGFHSVGVMEAGGC 47


>tr|A9SFV4|A9SFV4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_62760 PE=4 SV=1
          Length = 129

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 3   PAGFTGTDTLACGAM 47
           PAGFT TDTLACGA+
Sbjct: 97  PAGFTATDTLACGAL 111