DK947168 [AcEST]

DK947168
Clone id	YMU02A01NGRL0015_A14
Library	YMU02
Length	496
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_A14. 5' end sequence.
Accession	DK947168
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGTAGACGTCT AAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAA TAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCG TTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGTAAAAAAAAAAAAAA AAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q10948
Definition	sp\|Q10948\|YMP4_CAEEL Uncharacterized protein B0361.4 OS=Caenorhabditis elegans
Align length	35
Score (bit)	29.6
E-value	6.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK947168\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_A14, 5' (453 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q10948\|YMP4_CAEEL Uncharacterized protein B0361.4 OS=Caenorha... 30 6.3 sp\|Q9M158\|Y4105_ARATH Uncharacterized protein At4g01050 OS=Arabi... 29 8.2 >sp\|Q10948\|YMP4_CAEEL Uncharacterized protein B0361.4 OS=Caenorhabditis elegans GN=B0361.4 PE=4 SV=1 Length = 374 Score = 29.6 bits (65), Expect = 6.3 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = -2 Query: 374 PGFIYSNFLSQIYSLRFSDDESAILDVYHRFFSLF 270 PGF+Y + S IYS FS I+ ++ FFS+F Sbjct: 344 PGFVYVDLKSSIYSCYFS-----IIYYFYYFFSIF 373 >sp\|Q9M158\|Y4105_ARATH Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2 Length = 466 Score = 29.3 bits (64), Expect = 8.2 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = -2 Query: 437 SPSCNEGSRSTKMFNNLDKPGFIYSNFLSQIYSLRFSDDESAILDVYHRF 282 SP+ G ++ ++N DKPGF+ + SL+F D E+ L + +F Sbjct: 164 SPNIKGLGKKAVSTVYNGEDKPGFL------KKLSLKFKDPENTTLYILDKF 209
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6D2J9
Definition	tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length	50
Score (bit)	35.0
E-value	1.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK947168\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_A14, 5' (453 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.9 >tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1 GN=VSAK1_01567 PE=4 SV=1 Length = 319 Score = 35.0 bits (79), Expect = 1.9 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = -2 Query: 188 LKMSDEIDSTSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39 LK +++E+D ST + ++++F A +F+L VNL + R++ Q C + Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283