NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947179
Clone id YMU02A01NGRL0015_B04
Library
Length 172
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_B04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAGAAGGTAAAATACGAGGCACTTTATTGTTAAGTTTGGCTTTCATGGAAGCTTTGACA
ATTTATGGATTAGTTGTAGCTCTAGCCCTGTTATTTGCAAATCCGTTTGTCTAAACCATC
TCGACGAATAAGAAATAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q32RK9
Definition sp|Q32RK9|ATPH_ZYGCR ATP synthase subunit c, chloroplastic OS=Zygnema circumcarinatum
Align length 37
Score (bit) 72.0
E-value 8.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947179|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_B04, 5'
         (142 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q32RK9|ATPH_ZYGCR ATP synthase subunit c, chloroplastic OS=Zy...    72   8e-13
sp|P69448|ATPH_WHEAT ATP synthase subunit c, chloroplastic OS=Tr...    72   8e-13
sp|B2Y1W0|ATPH_WELMI ATP synthase subunit c, chloroplastic OS=We...    72   8e-13
sp|Q0ZJ33|ATPH_VITVI ATP synthase subunit c, chloroplastic OS=Vi...    72   8e-13
sp|A9QC36|ATPH_TRACE ATP synthase subunit c, chloroplastic OS=Tr...    72   8e-13
sp|P06286|ATPH_TOBAC ATP synthase subunit c, chloroplastic OS=Ni...    72   8e-13
sp|Q32RS6|ATPH_STAPU ATP synthase subunit c, chloroplastic OS=St...    72   8e-13
sp|P69447|ATPH_SPIOL ATP synthase subunit c, chloroplastic OS=Sp...    72   8e-13
sp|P69195|ATPH_SOYBN ATP synthase subunit c, chloroplastic OS=Gl...    72   8e-13
sp|A1E9R9|ATPH_SORBI ATP synthase subunit c, chloroplastic OS=So...    72   8e-13
sp|Q2VEI9|ATPH_SOLTU ATP synthase subunit c, chloroplastic OS=So...    72   8e-13
sp|Q2MIB3|ATPH_SOLLC ATP synthase subunit c, chloroplastic OS=So...    72   8e-13
sp|Q2MIK0|ATPH_SOLBU ATP synthase subunit c, chloroplastic OS=So...    72   8e-13
sp|Q6ENW8|ATPH_SACOF ATP synthase subunit c, chloroplastic OS=Sa...    72   8e-13
sp|Q6L3A2|ATPH_SACHY ATP synthase subunit c, chloroplastic OS=Sa...    72   8e-13
sp|Q4FGE9|ATPH_RANMC ATP synthase subunit c, chloroplastic OS=Ra...    72   8e-13
sp|Q7HJJ2|ATPH_PSINU ATP synthase subunit c, chloroplastic OS=Ps...    72   8e-13
sp|A4GYP5|ATPH_POPTR ATP synthase subunit c, chloroplastic OS=Po...    72   8e-13
sp|Q14FH0|ATPH_POPAL ATP synthase subunit c, chloroplastic OS=Po...    72   8e-13
sp|Q09G59|ATPH_PLAOC ATP synthase subunit c, chloroplastic OS=Pl...    72   8e-13
sp|Q06GS3|ATPH_PIPCE ATP synthase subunit c, chloroplastic OS=Pi...    72   8e-13
sp|P41603|ATPH_PINTH ATP synthase subunit c, chloroplastic OS=Pi...    72   8e-13
sp|Q7GUD2|ATPH_PINKO ATP synthase subunit c, chloroplastic OS=Pi...    72   8e-13
sp|Q6YXK1|ATPH_PHYPA ATP synthase subunit c, chloroplastic OS=Ph...    72   8e-13
sp|A4GGB0|ATPH_PHAVU ATP synthase subunit c, chloroplastic OS=Ph...    72   8e-13
sp|Q3BAQ5|ATPH_PHAAO ATP synthase subunit c, chloroplastic OS=Ph...    72   8e-13
sp|Q06FX4|ATPH_PELHO ATP synthase subunit c, chloroplastic OS=Pe...    72   8e-13
sp|Q68S19|ATPH_PANGI ATP synthase subunit c, chloroplastic OS=Pa...    72   8e-13
sp|P0C301|ATPH_ORYSJ ATP synthase subunit c, chloroplastic OS=Or...    72   8e-13
sp|P0C300|ATPH_ORYSI ATP synthase subunit c, chloroplastic OS=Or...    72   8e-13

>sp|Q32RK9|ATPH_ZYGCR ATP synthase subunit c, chloroplastic
           OS=Zygnema circumcarinatum GN=atpH PE=3 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|P69448|ATPH_WHEAT ATP synthase subunit c, chloroplastic
           OS=Triticum aestivum GN=atpH PE=1 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|B2Y1W0|ATPH_WELMI ATP synthase subunit c, chloroplastic
           OS=Welwitschia mirabilis GN=atpH PE=3 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|Q0ZJ33|ATPH_VITVI ATP synthase subunit c, chloroplastic OS=Vitis
           vinifera GN=atpH PE=3 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|A9QC36|ATPH_TRACE ATP synthase subunit c, chloroplastic
           OS=Trachelium caeruleum GN=atpH PE=3 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|P06286|ATPH_TOBAC ATP synthase subunit c, chloroplastic
           OS=Nicotiana tabacum GN=atpH PE=3 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|Q32RS6|ATPH_STAPU ATP synthase subunit c, chloroplastic
           OS=Staurastrum punctulatum GN=atpH PE=3 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|P69447|ATPH_SPIOL ATP synthase subunit c, chloroplastic
           OS=Spinacia oleracea GN=atpH PE=1 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|P69195|ATPH_SOYBN ATP synthase subunit c, chloroplastic
           OS=Glycine max GN=atpH PE=3 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>sp|A1E9R9|ATPH_SORBI ATP synthase subunit c, chloroplastic
           OS=Sorghum bicolor GN=atpH PE=3 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
tr_hit_id Q5EG51
Definition tr|Q5EG51|Q5EG51_LOPEL ATP synthase CF0 subunit III OS=Lophopyrum elongatum
Align length 37
Score (bit) 72.0
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947179|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_B04, 5'
         (142 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5EG51|Q5EG51_LOPEL ATP synthase CF0 subunit III OS=Lophopyru...    72   1e-11
tr|Q589B5|Q589B5_SILLA ATP synthase CF0 C chain OS=Silene latifo...    72   1e-11
tr|Q4FGF1|Q4FGF1_GINBI ATP synthase CF0 C chain (Fragment) OS=Gi...    72   1e-11
tr|Q4FGE8|Q4FGE8_TYPLA ATP synthase CF0 C chain (Fragment) OS=Ty...    72   1e-11
tr|Q4FGE7|Q4FGE7_9ASPA ATP synthase CF0 C chain (Fragment) OS=Yu...    72   1e-11
tr|B8Y2W9|B8Y2W9_FESAR ATP synthase CF0 subunit III OS=Festuca a...    72   1e-11
tr|B7ZIN3|B7ZIN3_KETDA ATP synthase CF0 C chain OS=Keteleeria da...    72   1e-11
tr|B7ZIF6|B7ZIF6_EPHEU ATP synthase CF0 C chain OS=Ephedra equis...    72   1e-11
tr|B7ZIB3|B7ZIB3_GNEPA ATP synthase CF0 C chain OS=Gnetum parvif...    72   1e-11
tr|B7ZI48|B7ZI48_WELMI ATP synthase CF0 C chain OS=Welwitschia m...    72   1e-11
tr|B7T433|B7T433_9ROSI ATP synthase CF0 subunit III OS=Pelargoni...    72   1e-11
tr|B7T3H0|B7T3H0_9ROSI ATP synthase CF0 subunit III OS=Geranium ...    72   1e-11
tr|B7T399|B7T399_9ROSI ATP synthase CF0 subunit III OS=Geranium ...    72   1e-11
tr|B7T329|B7T329_9ROSI ATP synthase CF0 subunit III OS=Geranium ...    72   1e-11
tr|B7T2V8|B7T2V8_EROTE ATP synthase CF0 subunit III OS=Erodium t...    72   1e-11
tr|B7T2P6|B7T2P6_9ROSI ATP synthase CF0 subunit III OS=Erodium c...    72   1e-11
tr|B6SP77|B6SP77_MAIZE ATP synthase C chain OS=Zea mays PE=4 SV=1      72   1e-11
tr|B5AGZ6|B5AGZ6_9ROSI ATP synthase CF0 subunit III OS=Gonystylu...    72   1e-11
tr|A9QBW2|A9QBW2_9ASTR ATP synthase CF0 subunit III (Fragment) O...    72   1e-11
tr|A9QBP2|A9QBP2_PASBI ATP synthase CF0 subunit III (Fragment) O...    72   1e-11
tr|A9QBG5|A9QBG5_MUSAC ATP synthase CF0 subunit III (Fragment) O...    72   1e-11
tr|A9QB73|A9QB73_ELAOL ATP synthase CF0 subunit III (Fragment) O...    72   1e-11
tr|A9QAZ6|A9QAZ6_9SPER ATP synthase C chain (Fragment) OS=Cycas ...    72   1e-11
tr|A9QAR9|A9QAR9_9APIA ATP synthase CF0 subunit III (Fragment) O...    72   1e-11
tr|A7KVT7|A7KVT7_OLEEU ATP synthase C chain (Fragment) OS=Olea e...    72   1e-11
tr|B5W2X3|B5W2X3_SPIMA ATP synthase F0, C subunit OS=Arthrospira...    70   4e-11
tr|A5HEI4|A5HEI4_SPIPL ATP synthase C chain OS=Arthrospira plate...    70   4e-11
tr|B7T3W2|B7T3W2_9ROSI ATP synthase CF0 subunit III OS=Monsonia ...    70   5e-11
tr|B7T3P1|B7T3P1_9ROSI ATP synthase CF0 subunit III OS=Monsonia ...    70   7e-11
tr|B8R489|B8R489_TRISU ATP synthase CF0 subunit III OS=Trifolium...    69   9e-11

>tr|Q5EG51|Q5EG51_LOPEL ATP synthase CF0 subunit III OS=Lophopyrum
           elongatum GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|Q589B5|Q589B5_SILLA ATP synthase CF0 C chain OS=Silene latifolia
           GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|Q4FGF1|Q4FGF1_GINBI ATP synthase CF0 C chain (Fragment)
           OS=Ginkgo biloba GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|Q4FGE8|Q4FGE8_TYPLA ATP synthase CF0 C chain (Fragment) OS=Typha
           latifolia GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|Q4FGE7|Q4FGE7_9ASPA ATP synthase CF0 C chain (Fragment) OS=Yucca
           schidigera GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|B8Y2W9|B8Y2W9_FESAR ATP synthase CF0 subunit III OS=Festuca
           arundinacea GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|B7ZIN3|B7ZIN3_KETDA ATP synthase CF0 C chain OS=Keteleeria
           davidiana GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|B7ZIF6|B7ZIF6_EPHEU ATP synthase CF0 C chain OS=Ephedra
           equisetina GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|B7ZIB3|B7ZIB3_GNEPA ATP synthase CF0 C chain OS=Gnetum
           parvifolium GN=atpH PE=4 SV=1
          Length = 81

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 45  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81


>tr|B7ZI48|B7ZI48_WELMI ATP synthase CF0 C chain OS=Welwitschia
           mirabilis GN=atpH PE=4 SV=1
          Length = 112

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 1   AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 111
           AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct: 76  AEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 112