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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947188
Clone id YMU02A01NGRL0015_B16
Library
Length 223
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_B16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATACAAAGGTGGATAAGAGAAAGATGGGGGAGGGACCGGCCATGACAGCATCTATGGGA
TTTTTCTTAGTTTGGATTTGTTTCTTGGGAGTCAATTTATTAGGAGTTGGATTGCATAAT
TACGGATGGTTAGCGTAAAGACCAGAAGGTTAATTTTGGCAAATTGAAGGAAAATAAAAA
GGAAGGGGGAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q85FH6
Definition sp|Q85FH6|CCSA_ADICA Cytochrome c biogenesis protein ccsA OS=Adiantum capillus-veneris
Align length 44
Score (bit) 63.2
E-value 4.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947188|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_B16, 5'
         (194 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FH6|CCSA_ADICA Cytochrome c biogenesis protein ccsA OS=Adi...    63   4e-10
sp|P12214|CCSA_MARPO Cytochrome c biogenesis protein ccsA OS=Mar...    37   0.041
sp|Q7YJT4|CCSA_CALFG Cytochrome c biogenesis protein ccsA OS=Cal...    37   0.041
sp|Q1XDB8|CCSA_PORYE Cytochrome c biogenesis protein ccsA OS=Por...    36   0.069
sp|A6H5P1|CCSA_CYCTA Cytochrome c biogenesis protein ccsA OS=Cyc...    36   0.069
sp|P41650|CCSA_PINTH Cytochrome c biogenesis protein ccsA OS=Pin...    35   0.090
sp|P48257|CCSA_CYAPA Cytochrome c biogenesis protein ccsA OS=Cya...    35   0.090
sp|P51369|CCSA_PORPU Cytochrome c biogenesis protein ccsA OS=Por...    35   0.12 
sp|A9L9E6|CCSA_LEMMI Cytochrome c biogenesis protein ccsA OS=Lem...    34   0.20 
sp|Q6EW01|CCSA_NYMAL Cytochrome c biogenesis protein ccsA OS=Nym...    34   0.26 
sp|A6MMH8|CCSA_CHLSC Cytochrome c biogenesis protein ccsA OS=Chl...    34   0.26 
sp|A6MMZ4|CCSA_ILLOL Cytochrome c biogenesis protein ccsA OS=Ill...    33   0.34 
sp|Q4FGG1|CCSA_RANMC Cytochrome c biogenesis protein ccsA OS=Ran...    33   0.59 
sp|P22554|CCSA_GUITH Cytochrome c biogenesis protein ccsA OS=Gui...    33   0.59 
sp|Q2QD41|CCSA_CUCSA Cytochrome c biogenesis protein ccsA OS=Cuc...    33   0.59 
sp|Q4FGG2|CCSA_NUPAD Cytochrome c biogenesis protein ccsA OS=Nup...    32   0.77 
sp|Q0G9H0|CCSA_LIRTU Cytochrome c biogenesis protein ccsA OS=Lir...    32   0.77 
sp|Q2JV29|CCSA_SYNJA Cytochrome c biogenesis protein ccsA OS=Syn...    32   1.00 
sp|Q09FZ7|CCSA_PLAOC Cytochrome c biogenesis protein ccsA OS=Pla...    32   1.00 
sp|Q09FR1|CCSA_NANDO Cytochrome c biogenesis protein ccsA OS=Nan...    32   1.00 
sp|Q9MUM3|CCSA_MESVI Cytochrome c biogenesis protein ccsA OS=Mes...    32   1.00 
sp|Q1KXQ2|CCSA_HELAN Cytochrome c biogenesis protein ccsA OS=Hel...    32   1.00 
sp|A6MMR4|CCSA_DIOEL Cytochrome c biogenesis protein ccsA OS=Dio...    32   1.00 
sp|P48269|CCSA_CHLRE Cytochrome c biogenesis protein ccsA OS=Chl...    32   1.00 
sp|A6MM86|CCSA_BUXMI Cytochrome c biogenesis protein ccsA OS=Bux...    32   1.00 
sp|Q2JQ31|CCSA_SYNJB Cytochrome c biogenesis protein ccsA OS=Syn...    32   1.3  
sp|Q06GK4|CCSA_PIPCE Cytochrome c biogenesis protein ccsA OS=Pip...    32   1.3  
sp|P12216|CCSA_TOBAC Cytochrome c biogenesis protein ccsA OS=Nic...    31   1.7  
sp|Q2VED1|CCSA_SOLTU Cytochrome c biogenesis protein ccsA OS=Sol...    31   1.7  
sp|Q2MI51|CCSA_SOLLC Cytochrome c biogenesis protein ccsA OS=Sol...    31   1.7  

>sp|Q85FH6|CCSA_ADICA Cytochrome c biogenesis protein ccsA
           OS=Adiantum capillus-veneris GN=ccsA PE=2 SV=2
          Length = 316

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 30/44 (68%), Positives = 30/44 (68%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWLA 135
           TKVDKRKMGEGPAMTASMGFFLVWICF              WLA
Sbjct: 273 TKVDKRKMGEGPAMTASMGFFLVWICFLGVNLLGVGLHNYGWLA 316


>sp|P12214|CCSA_MARPO Cytochrome c biogenesis protein ccsA
           OS=Marchantia polymorpha GN=ccsA PE=3 SV=1
          Length = 320

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWL 132
           T++ K   G+ PA+ AS+GFF+VWIC+              WL
Sbjct: 277 TRMIKGWQGKKPAIIASLGFFIVWICYLGVNLLGKGLHSYGWL 319


>sp|Q7YJT4|CCSA_CALFG Cytochrome c biogenesis protein ccsA
           OS=Calycanthus floridus var. glaucus GN=ccsA PE=3 SV=1
          Length = 323

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICF 84
           T+ ++R    GPA+ ASMGF ++WIC+
Sbjct: 276 TRTNQRFQDVGPAIVASMGFLIIWICY 302


>sp|Q1XDB8|CCSA_PORYE Cytochrome c biogenesis protein ccsA
           OS=Porphyra yezoensis GN=ccsA PE=3 SV=1
          Length = 319

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWLA 135
           +++ K   G+ PA+ AS+GF +VWIC+              WLA
Sbjct: 276 SRITKSWQGKKPAILASLGFLVVWICYLGVNFLGKGLHSYGWLA 319


>sp|A6H5P1|CCSA_CYCTA Cytochrome c biogenesis protein ccsA OS=Cycas
           taitungensis GN=ccsA PE=3 SV=1
          Length = 321

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWL 132
           T+V+K    E PA+ AS+G F+VWIC+              WL
Sbjct: 278 TRVNKGWQDENPAIIASLGSFIVWICYLGVDLLGIGLHSYGWL 320


>sp|P41650|CCSA_PINTH Cytochrome c biogenesis protein ccsA OS=Pinus
           thunbergii GN=ccsA PE=3 SV=1
          Length = 320

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWL 132
           T+++K   GE PA+ AS+GFF+VWI +              WL
Sbjct: 276 TRMNKGWQGEEPAIVASLGFFIVWIRYLGVNLLGIGLHSYGWL 318


>sp|P48257|CCSA_CYAPA Cytochrome c biogenesis protein ccsA
           OS=Cyanophora paradoxa GN=ccsA PE=3 SV=1
          Length = 322

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICF 84
           T++ K   G+  AM AS+GFF++WIC+
Sbjct: 279 TRIIKGWQGKKAAMVASLGFFIIWICY 305


>sp|P51369|CCSA_PORPU Cytochrome c biogenesis protein ccsA
           OS=Porphyra purpurea GN=ccsA PE=3 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 7   KVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWLA 135
           ++ K   G+ PA+ AS+GF +VWIC+              WLA
Sbjct: 277 RITKSWQGKRPAILASVGFLVVWICYLGVNFLGKGLHSYGWLA 319


>sp|A9L9E6|CCSA_LEMMI Cytochrome c biogenesis protein ccsA OS=Lemna
           minor GN=ccsA PE=3 SV=1
          Length = 324

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICF 84
           T+  K   G   A+ AS+GFF++WIC+
Sbjct: 279 TRTTKNGQGANSAIVASIGFFIIWICY 305


>sp|Q6EW01|CCSA_NYMAL Cytochrome c biogenesis protein ccsA
           OS=Nymphaea alba GN=ccsA PE=3 SV=1
          Length = 308

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICF 84
           T+ +K   G   A+ ASMGF ++WIC+
Sbjct: 262 TRTNKSLQGANSAIVASMGFLIIWICY 288
tr_hit_id Q4FGG3
Definition tr|Q4FGG3|Q4FGG3_GINBI Cytochrome c biogenesis protein (Fragment) OS=Ginkgo biloba
Align length 43
Score (bit) 38.1
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947188|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_B16, 5'
         (194 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4FGG3|Q4FGG3_GINBI Cytochrome c biogenesis protein (Fragment...    38   0.22 
tr|B1VKJ8|B1VKJ8_CRYJA Cytochrome c heme attachment protein OS=C...    36   1.1  
tr|A9QB63|A9QB63_9SPER Cytochrome c heme attachment protein (Fra...    36   1.1  
tr|Q1KVS6|Q1KVS6_SCEOB Heme attachment to plastid cytochrome c O...    35   1.9  
tr|B7T331|B7T331_9ROSI Cytochrome c heme attachment protein OS=G...    35   1.9  
tr|Q4G372|Q4G372_EMIHU Cytochrome c biogenesis protein OS=Emilia...    35   2.4  
tr|B2X276|B2X276_CHLMO Heme attachment to plastid cytochrome c p...    35   2.4  
tr|Q6B8M5|Q6B8M5_GRATL C-type cytochrome synthesis protein OS=Gr...    34   3.2  
tr|Q2PQH3|Q2PQH3_FUCVE Cytochrome c biogenesis protein OS=Fucus ...    34   3.2  
tr|Q06SG2|Q06SG2_STIHE Heme attachment to plastid cytochrome c O...    34   3.2  
tr|B8R163|B8R163_VOLCA Cytochrome c biogenesis protein OS=Volvox...    34   3.2  
tr|B2X211|B2X211_9CHLO Heme attachment to plastid cytochrome c p...    34   3.2  
tr|A6BM14|A6BM14_GNEPA Cytochrome c biogenesis protein OS=Gnetum...    34   3.2  
tr|B7T3H2|B7T3H2_9ROSI Cytochrome c heme attachment protein OS=G...    34   4.2  
tr|A9U339|A9U339_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A2CI72|A2CI72_CHLAT Heme attachment to plastid cytochrome c O...    34   4.2  
tr|B7T3A1|B7T3A1_9ROSI Cytochrome c heme attachment protein OS=G...    33   7.1  
tr|A9QBD9|A9QBD9_ELAOL Cytochrome c heme attachment protein (Fra...    33   7.1  
tr|Q9MRI2|Q9MRI2_GNEGN Magnesium-chelatase subunit chlI OS=Gnetu...    33   9.3  
tr|B7ZIK3|B7ZIK3_EPHEU Cytochrome c biogenesis protein OS=Ephedr...    33   9.3  
tr|B7T2P8|B7T2P8_9ROSI Cytochrome c heme attachment protein OS=E...    33   9.3  
tr|A6MVT0|A6MVT0_RHDSA Cytochrome c biogenesis protein OS=Rhodom...    33   9.3  
tr|A2T382|A2T382_ANGEV Cytochrome c heme attachment protein OS=A...    33   9.3  

>tr|Q4FGG3|Q4FGG3_GINBI Cytochrome c biogenesis protein (Fragment)
           OS=Ginkgo biloba GN=ccsA PE=4 SV=1
          Length = 320

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWL 132
           ++++K   GE PA+ AS+GFF++WIC+              WL
Sbjct: 278 SRMNKGWQGEKPAIAASLGFFIIWICYLGVDLLGIGLHSYGWL 320


>tr|B1VKJ8|B1VKJ8_CRYJA Cytochrome c heme attachment protein
           OS=Cryptomeria japonica GN=ccsA PE=4 SV=1
          Length = 314

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWL 132
           T++++   GE PA+ AS+GF LVW C+              WL
Sbjct: 271 TRINRGWKGEKPAIVASLGFILVWTCYLGVDLLGIGLHSYGWL 313


>tr|A9QB63|A9QB63_9SPER Cytochrome c heme attachment protein
           (Fragment) OS=Cycas micronesica GN=ccsA PE=4 SV=1
          Length = 321

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWL 132
           T+V+K    E PA+ AS+G F+VWIC+              WL
Sbjct: 278 TRVNKGWQDENPAIIASLGSFIVWICYLGVDLLGIGLHSYGWL 320


>tr|Q1KVS6|Q1KVS6_SCEOB Heme attachment to plastid cytochrome c
           OS=Scenedesmus obliquus GN=ccsA PE=4 SV=1
          Length = 377

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICF 84
           T++ K   G+ PA+ AS+GF +VWICF
Sbjct: 334 TRLTKGWHGKKPALIASLGFIVVWICF 360


>tr|B7T331|B7T331_9ROSI Cytochrome c heme attachment protein
           OS=Geranium carolinianum GN=ccsA PE=4 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 7   KVDKRKMGEGPAMTASMGFFLVWICF 84
           + +KR  G   A+ ASMGFF++W+C+
Sbjct: 275 RTNKRVEGVNSAIVASMGFFIIWVCY 300


>tr|Q4G372|Q4G372_EMIHU Cytochrome c biogenesis protein OS=Emiliania
           huxleyi GN=ccsa PE=4 SV=1
          Length = 322

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 7   KVDKRKMGEGPAMTASMGFFLVWICF 84
           ++ K   GE PA+ AS+GF +VWIC+
Sbjct: 280 RITKSWQGEKPAIIASIGFIVVWICY 305


>tr|B2X276|B2X276_CHLMO Heme attachment to plastid cytochrome c
           protein OS=Chlamydomonas moewusii GN=ccsA PE=4 SV=1
          Length = 424

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWL 132
           T++ K   G+ PA+ AS+GF  VWICF              WL
Sbjct: 380 TRLTKGWEGQKPALIASLGFVTVWICFLGVNLIGEGLHSYGWL 422


>tr|Q6B8M5|Q6B8M5_GRATL C-type cytochrome synthesis protein
           OS=Gracilaria tenuistipitata var. liui GN=ccsA PE=4 SV=1
          Length = 298

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICF 84
           ++++K   GE PA+ AS+GF +VWIC+
Sbjct: 255 SRLNKSWQGEKPAILASIGFAVVWICY 281


>tr|Q2PQH3|Q2PQH3_FUCVE Cytochrome c biogenesis protein OS=Fucus
           vesiculosus GN=ccsA PE=4 SV=1
          Length = 343

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 28  GEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWLA 135
           G+GPA  AS+ FF+VWIC+              W A
Sbjct: 306 GKGPACLASLAFFVVWICYLGVNFLGQGLHSYGWFA 341


>tr|Q06SG2|Q06SG2_STIHE Heme attachment to plastid cytochrome c
           OS=Stigeoclonium helveticum GN=ccsA PE=4 SV=1
          Length = 359

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 4   TKVDKRKMGEGPAMTASMGFFLVWICFXXXXXXXXXXXXXXWLA 135
           T++ K   G+ PA+ A+ GF +VWICF              WL+
Sbjct: 316 TRLTKGWQGKKPAIIAAFGFIVVWICFIGVNLLGKGLHSYGWLS 359