DK947192 |
Clone id |
YMU02A01NGRL0015_B22 |
Library |
YMU02 |
Length |
480 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_B22. 5' end sequence. |
Accession |
DK947192 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL24Contig1 |
Sequence |
GTATGTGATCACATGGGAGTCGCCGAAGGAACAGATCTTCGAGATGCCGACGGGAGGAGC TGCGATCATGAGGTCGGGGCCAAATCTTTTGAAGCTTGCGAGGAAGGAGCAGTGCCTTGC CCTTGGCACCAAGCTGCGTTCCAAGTTTAAAATTAATTACCAGTTCTACCGAGTGTTTCC TAATGGCGAGGTGCAGTACCTTCATCCCAAGGACGGAGTATACCCCGAGAAAGTGAACCC CGGCCGCAAGGGTGTTGGCGTGAACTTGCGCTCTATTGGAGAGAATGTAAACCCCGCCAC AGTCAAGTTCACTGGCAAGAACGCTTACGATTTGTGAGGAGCATGTTGCTGACCCCTTTA TGATTCTTTCTGTAAGTGGTCTGTGGCAAGCTCATGTCTTCTATCTTTCATGATTGTAAA GTTTTTCTGTAATAGACTACTTCTTCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P32869 |
Definition |
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus |
Align length |
111 |
Score (bit) |
208.0 |
E-value |
1.0e-53 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947192|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_B22, 5' (450 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 208 1e-53 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 207 1e-53 sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 207 2e-53 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 207 2e-53 sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 204 1e-52 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 200 2e-51 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 200 3e-51 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 168 1e-41 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 166 3e-41 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 160 2e-39 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 157 2e-38 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 156 4e-38 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 155 7e-38 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 153 4e-37 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 153 4e-37 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 150 2e-36 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 147 2e-35 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 147 3e-35 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 145 8e-35 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 144 2e-34 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 144 2e-34 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 144 2e-34 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 142 6e-34 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 138 9e-33 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 133 3e-31 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 125 6e-29 sp|Q5HW65|GLYA_CAMJR Serine hydroxymethyltransferase OS=Campylob... 33 0.73 sp|A1VYC2|GLYA_CAMJJ Serine hydroxymethyltransferase OS=Campylob... 33 0.73 sp|P24531|GLYA_CAMJE Serine hydroxymethyltransferase OS=Campylob... 33 0.73 sp|A7H4X6|GLYA_CAMJD Serine hydroxymethyltransferase OS=Campylob... 33 0.73
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 208 bits (529), Expect = 1e-53 Identities = 98/111 (88%), Positives = 103/111 (92%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFP 181 YVITWESPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFP Sbjct: 97 YVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP 156
Query: 182 NGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 334 NGEVQYLHPKDGVYPEKVNPGR+GVG N RSIG+NV+P VKFTGK YDL Sbjct: 157 NGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 207 bits (528), Expect = 1e-53 Identities = 97/111 (87%), Positives = 105/111 (94%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFP 181 YVITWESPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFP Sbjct: 102 YVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP 161
Query: 182 NGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 334 +GEVQYLHPKDGVYPEKVNPGR+GVG+N+RSIG+NV+P VKFTGK YDL Sbjct: 162 SGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 207 bits (526), Expect = 2e-53 Identities = 96/111 (86%), Positives = 104/111 (93%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFP 181 YVITW SPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFP Sbjct: 94 YVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFP 153
Query: 182 NGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 334 NGEVQYLHPKDGVYPEK NPGR+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 154 NGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 207 bits (526), Expect = 2e-53 Identities = 96/111 (86%), Positives = 104/111 (93%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFP 181 YVITW SPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFP Sbjct: 98 YVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFP 157
Query: 182 NGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 334 NGEVQYLHPKDGVYPEK NPGR+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 158 NGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 204 bits (519), Expect = 1e-52 Identities = 96/111 (86%), Positives = 102/111 (91%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFP 181 YVITWESPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KINYQFYRVFP Sbjct: 98 YVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFP 157
Query: 182 NGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 334 NGEVQYLHPKDGVYPEKVNPGR+GVG N RSIG+N + VKFTGK YD+ Sbjct: 158 NGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 200 bits (509), Expect = 2e-51 Identities = 95/111 (85%), Positives = 101/111 (90%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFP 181 YVITWESPKEQIFEMPTGGAAIMR G NLLKLARKEQCLALGT+LRSK+KINY+FYRVFP Sbjct: 94 YVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFP 153
Query: 182 NGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 334 NGEVQYLHPKDGVYPEKVN GR+GVG N RSIG+N +P VKFTGK YDL Sbjct: 154 NGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 200 bits (508), Expect = 3e-51 Identities = 93/111 (83%), Positives = 102/111 (91%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFP 181 YVITW SPKEQ+FEMPTGGAAIMR GPNLLKLARKEQCLALG +LRSK+KI YQFYRVFP Sbjct: 95 YVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFP 154
Query: 182 NGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 334 NGEVQYLHPKDGVYPEKVN GR+GVG N RSIG+NV+P VKFTGKN++D+ Sbjct: 155 NGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 168 bits (425), Expect = 1e-41 Identities = 80/111 (72%), Positives = 94/111 (84%), Gaps = 1/111 (0%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKI-NYQFYRVF 178 Y ITW SPKEQ+FEMPTGGAAIMR G NLL LARKEQCLALGT++++ FKI +Y+ YR+F Sbjct: 31 YAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIF 90
Query: 179 PNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYD 331 P+GEVQYLHPKDGV+PEKVNPGR GVG SIG+N+NPA +KFT K+ D Sbjct: 91 PSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1 Length = 196
Score = 166 bits (421), Expect = 3e-41 Identities = 78/106 (73%), Positives = 89/106 (83%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFP 181 YVITWE+ KEQIFEMPTGGAAIMR GPNLLK +KEQCLAL T+LR+KFK+ FYRVFP Sbjct: 84 YVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFP 143
Query: 182 NGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGK 319 +G+VQYLHP DGVYPEKVN GR G N+R IG+NVNP VKF+G+ Sbjct: 144 DGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGR 189
>sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1 Length = 139
Score = 160 bits (406), Expect = 2e-39 Identities = 80/111 (72%), Positives = 92/111 (82%), Gaps = 1/111 (0%) Frame = +2
Query: 2 YVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKIN-YQFYRVF 178 Y ITW S KEQIFEMPTGGAAIMR+G NLL LARKEQCLALGT+LR+ FKIN Y+ YR+F Sbjct: 29 YAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRT-FKINDYKIYRIF 87
Query: 179 PNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYD 331 P+GEVQYLHPKDGV+PEKVNPGR V SIG+N NPA++KF+G Y+ Sbjct: 88 PSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NL03 |
Definition |
tr|A9NL03|A9NL03_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
111 |
Score (bit) |
213.0 |
E-value |
3.0e-54 |
Report |
|