DK947196
Clone id YMU02A01NGRL0015_C02
Library
Length 325
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_C02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCAATGGAATTGGTTGCTTTGACACAGTCTTTGGCTGGCAGAGTCCTTGATGATGCGTAG
CTTAGTTTTAGAAGATCCCTGAAGCAATCGAGGATAAGCTCTTTGTTTGTCATCTCATTT
TGTGGACACTCAAAAAAGTAGCTATGCAGTTTTGGCATTCGAGTGTCATGTTGGATTGAT
TTCTGGCTGTCTGCACGTGTGTGGATTCTCCCTTGTAGGTGTTAATCTGAGAGGTGAGGT
GGCTTCTTGTTTCCATCCGTTTTGGATGTCCCCTTCAAGAGAATCTATTTTGTGTGGTTA
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SVX4
Definition sp|Q9SVX4|FB205_ARATH Putative F-box protein At3g57590 OS=Arabidopsis thaliana
Align length 40
Score (bit) 29.3
E-value 6.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947196|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_C02, 5'
(299 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9SVX4|FB205_ARATH Putative F-box protein At3g57590 OS=Arabid... 29 6.5
sp|A6LKB8|RPOB_THEM4 DNA-directed RNA polymerase subunit beta OS... 29 8.4
sp|P70227|ITPR3_MOUSE Inositol 1,4,5-trisphosphate receptor type... 29 8.4
sp|Q14573|ITPR3_HUMAN Inositol 1,4,5-trisphosphate receptor type... 29 8.4
sp|Q63041|A1M_RAT Alpha-1-macroglobulin OS=Rattus norvegicus GN=... 29 8.4

>sp|Q9SVX4|FB205_ARATH Putative F-box protein At3g57590
OS=Arabidopsis thaliana GN=At3g57590 PE=4 SV=1
Length = 404

Score = 29.3 bits (64), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Frame = +2

Query: 191 LHVCGFSLVGVNLRGEVASC-------FHPFWMSPSRESI 289
L C FS+ GV RG++ C F+ F+ +P R ++
Sbjct: 299 LDSCDFSVAGVTTRGDIVLCMKYTCKPFYVFYFNPERNTL 338


>sp|A6LKB8|RPOB_THEM4 DNA-directed RNA polymerase subunit beta
OS=Thermosipho melanesiensis (strain BI429 / DSM 12029)
GN=rpoB PE=3 SV=1
Length = 1172

Score = 28.9 bits (63), Expect = 8.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2

Query: 268 HPKRMETRSHLTSQINTYKGESTHVQTARNQSNMTLECQNCIATFLSVHKMR*QT 104
HP M+T+ HL ++ GE ++ R S Q +AT+ S+ K+ Q+
Sbjct: 395 HPGTMDTKDHLGNKRVRTVGELIRIEFERAFSKAVFMIQEKLATYTSLDKISVQS 449


>sp|P70227|ITPR3_MOUSE Inositol 1,4,5-trisphosphate receptor type 3
OS=Mus musculus GN=Itpr3 PE=1 SV=3
Length = 2670

Score = 28.9 bits (63), Expect = 8.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2

Query: 256 METRSHLTSQINTYKGESTHVQTARNQSNMTLECQNCIA 140
M+ SHLTSQ+N K + T Q R Q ++ QNC++
Sbjct: 2632 MKLVSHLTSQLNELKEQMTE-QRKRRQRLGFVDVQNCMS 2669


>sp|Q14573|ITPR3_HUMAN Inositol 1,4,5-trisphosphate receptor type 3
OS=Homo sapiens GN=ITPR3 PE=1 SV=2
Length = 2671

Score = 28.9 bits (63), Expect = 8.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2

Query: 256 METRSHLTSQINTYKGESTHVQTARNQSNMTLECQNCIA 140
M+ SHLT+Q+N K + T Q R Q ++ QNCI+
Sbjct: 2633 MKLVSHLTAQLNELKEQMTE-QRKRRQRLGFVDVQNCIS 2670


>sp|Q63041|A1M_RAT Alpha-1-macroglobulin OS=Rattus norvegicus GN=A1m
PE=1 SV=1
Length = 1500

Score = 28.9 bits (63), Expect = 8.4
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 11/45 (24%)
Frame = -1

Query: 113 MTNKELILD--------CFRDLLKLSYASSRTLPAKD---CVKAT 12
+ N+ELI D CF + + LS+ S+++LPA D VKAT
Sbjct: 545 LPNEELIADVQKFDIEKCFANTVNLSFPSAQSLPASDTHLTVKAT 589


tr_hit_id Q7VJK1
Definition tr|Q7VJK1|Q7VJK1_HELHP Putative uncharacterized protein OS=Helicobacter hepaticus
Align length 50
Score (bit) 32.7
E-value 9.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947196|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_C02, 5'
(299 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7VJK1|Q7VJK1_HELHP Putative uncharacterized protein OS=Helic... 33 9.2
tr|B0WNV4|B0WNV4_CULQU Lipase 1 OS=Culex quinquefasciatus GN=Cpi... 33 9.2

>tr|Q7VJK1|Q7VJK1_HELHP Putative uncharacterized protein
OS=Helicobacter hepaticus GN=HH_0242 PE=4 SV=1
Length = 932

Score = 32.7 bits (73), Expect = 9.2
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = -2

Query: 235 TSQINTYKGESTHVQTARNQSNMTLECQNCIATFLSVHKMR*QTKSLSSI 86
++ I +YKG TH++ ++SN++L+ N I T + Q K+LSS+
Sbjct: 121 STPIKSYKGIITHIEYLGSKSNVSLDTNNTINTITDITNTS-QQKTLSSL 169


>tr|B0WNV4|B0WNV4_CULQU Lipase 1 OS=Culex quinquefasciatus
GN=CpipJ_CPIJ008733 PE=4 SV=1
Length = 412

Score = 32.7 bits (73), Expect = 9.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2

Query: 244 SHLTSQINTYKGESTHVQTARNQSNMTLECQNCIATFL 131
SH+T+ + TY G + HV RN + E N ++++L
Sbjct: 338 SHVTAPVRTYYGRNDHVVNFRNVKRLERELPNVVSSYL 375