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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947197
Clone id YMU02A01NGRL0015_C03
Library
Length 294
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_C03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TTTTGGTTCGGAAGGGAAGGTTCCTATGATGAATAATCTTTGGTGTGCACCCTTCCACTG
TGCACAAGCACGTAGTGTGAAGTTAAGAACCAACGCAGGCCAGTATTTTAAGAACACACA
AGTTTTGGTTGTCTGGCTGCTGAACAGGTGCACAATCTCATCATTTGTCGCAACACAATG
TGAATGCTGTTAAGTATATATATTTGCTGCAATATGAGCGTGCATTGGCTTGGTAGTCGA
AAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8BG07
Definition sp|Q8BG07|PLD4_MOUSE Phospholipase D4 OS=Mus musculus
Align length 43
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947197|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_C03, 5'
         (239 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BG07|PLD4_MOUSE Phospholipase D4 OS=Mus musculus GN=Pld4 PE...    32   0.99 

>sp|Q8BG07|PLD4_MOUSE Phospholipase D4 OS=Mus musculus GN=Pld4 PE=2
           SV=1
          Length = 503

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 132 TTKTCVFLKYWPALVLNFTLRACAQWKGAHQRLFIIGTFPSEP 4
           TT+     +YWP  VL+  LRA A  KG H RL +   F ++P
Sbjct: 343 TTRFTHHARYWP--VLDNALRAAALNKGVHVRLLVSCWFNTDP 383
tr_hit_id B4W6I5
Definition tr|B4W6I5|B4W6I5_9CAUL Putative uncharacterized protein OS=Brevundimonas sp. BAL3
Align length 48
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947197|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_C03, 5'
         (239 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4W6I5|B4W6I5_9CAUL Putative uncharacterized protein OS=Brevu...    36   1.1  

>tr|B4W6I5|B4W6I5_9CAUL Putative uncharacterized protein
           OS=Brevundimonas sp. BAL3 GN=BBAL3_3146 PE=4 SV=1
          Length = 284

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 80  KLRTNAGQYFKNTQVLVVWLLNRCTISSFVATQCECC*VYIFAAI*AC 223
           +LRT A  Y K    + VW+   C  S+FVA   ECC  +   A+  C
Sbjct: 164 ELRTRARSYIKAENFIDVWICPSCDESTFVAQNGECCFCHHKEAVIEC 211