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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947218
Clone id YMU02A01NGRL0015_D07
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_D07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAGCTGACGTATGACGAAACGCACAACATCAAGTTACTGGCCGAGAAAATGAGAACTGT
CGCGAAGATGCATATGTCTGAGTTCTTGCCATATTCCACAGCTTACTTGGAAGCAGAAAA
GCTGAAGAAGTCGCTCATGTTGCCAGCCTGAAACATGCAGGGTCATCTTTCAGCCTCTCT
CCCTCTTGTGCGTTCCTGCGCGGACGAGAGGTCAATGTTAAGTTACCAAAAGGAGGTTTT
TCCTTACCCCTCAATACTTGGGACTGTGCTAGATTGTCGTTCACTGCACTCTTTCTCAAA
TAATCACTGGTTGTTACCAGAAAGTAATTCTCTCTCTCAAGAAGACAATGCGGAGTGATT
TGGTACCTGTCTCAGTTAAGGGTATTAAATTGCGTCCATATTACTGGAAGTTCACCTTGT
TTCACTTGAAAACAAGAAAGAAGTTGTTGACAGCTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
■■Homology search results ■■ -
sp_hit_id Q9FMV1
Definition sp|Q9FMV1|UMP7_ARATH Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana
Align length 44
Score (bit) 45.4
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947218|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_D07, 5'
         (456 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FMV1|UMP7_ARATH Uncharacterized protein At5g63510, mitochon...    45   1e-04
sp|Q9SMN1|UMP8_ARATH Uncharacterized protein At3g48680, mitochon...    45   1e-04
sp|P60370|KR105_HUMAN Keratin-associated protein 10-5 OS=Homo sa...    33   0.76 
sp|Q9ZB07|PURQ_LACLC Phosphoribosylformylglycinamidine synthase ...    30   3.8  
sp|Q9CFE7|PURQ_LACLA Phosphoribosylformylglycinamidine synthase ...    30   3.8  
sp|Q54WN5|UTP6_DICDI U3 small nucleolar RNA-associated protein 6...    30   4.9  
sp|Q569A2|TSN12_RAT Tetraspanin-12 OS=Rattus norvegicus GN=Tspan...    30   6.4  
sp|Q5R8B5|TSN12_PONAB Tetraspanin-12 OS=Pongo abelii GN=TSPAN12 ...    30   6.4  
sp|Q8BKT6|TSN12_MOUSE Tetraspanin-12 OS=Mus musculus GN=Tspan12 ...    30   6.4  
sp|O95859|TSN12_HUMAN Tetraspanin-12 OS=Homo sapiens GN=TSPAN12 ...    30   6.4  
sp|Q29RH7|TSN12_BOVIN Tetraspanin-12 OS=Bos taurus GN=TSPAN12 PE...    30   6.4  
sp|Q626B1|PMY13_CAEBR Membrane-associated tyrosine- and threonin...    30   6.4  
sp|P54678|ATC1_DICDI Calcium-transporting ATPase PAT1 OS=Dictyos...    30   6.4  
sp|P94518|YSCA_BACSU Uncharacterized protein yscA OS=Bacillus su...    29   8.4  

>sp|Q9FMV1|UMP7_ARATH Uncharacterized protein At5g63510,
           mitochondrial OS=Arabidopsis thaliana GN=At5g63510 PE=1
           SV=1
          Length = 252

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +2

Query: 5   LTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSL 136
           LT +ET  I  LA  +  ++  + SEFLPYST YLE EK KKSL
Sbjct: 205 LTNEETLEIPKLAVAINHLSGDYFSEFLPYSTVYLEVEKFKKSL 248


>sp|Q9SMN1|UMP8_ARATH Uncharacterized protein At3g48680,
           mitochondrial OS=Arabidopsis thaliana GN=At3g48680 PE=1
           SV=1
          Length = 256

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +2

Query: 5   LTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSL 136
           LT +ET  I  LA  +  ++  + SEFLPYST YLE EK KKSL
Sbjct: 209 LTNEETLEIPKLAVAINHLSGDYFSEFLPYSTIYLEVEKFKKSL 252


>sp|P60370|KR105_HUMAN Keratin-associated protein 10-5 OS=Homo
           sapiens GN=KRTAP10-5 PE=2 SV=2
          Length = 271

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 69  CICLSSCHIPQLTWKQKS*RSRSCCQPETCRVIFQPLSLLCVPARTRGQC 218
           C+ +SSC  P  +++       SCC+P +C      +SLLC PA +R  C
Sbjct: 234 CVPISSCCAPASSYQ------ASCCRPASC------VSLLCRPACSRLAC 271


>sp|Q9ZB07|PURQ_LACLC Phosphoribosylformylglycinamidine synthase 1
           OS=Lactococcus lactis subsp. cremoris GN=purQ PE=3 SV=1
          Length = 226

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/81 (30%), Positives = 38/81 (46%)
 Frame = +2

Query: 203 DERSMLSYQKEVFPYPSILGTVLDCRSLHSFSNNHWLLPESNSLSQEDNAE*FGTCLS*G 382
           DE+S+  +   + P     G  L C ++ SF+N   ++PE   L++E     FGTC    
Sbjct: 35  DEKSLAGFDGVLIPGGFSYGDYLRCGAIASFAN---IMPEIKRLAKEGKPV-FGTCNGFQ 90

Query: 383 Y*IASILLEVHLVSLENKKEV 445
             + S LL   L+  E  K V
Sbjct: 91  ILVESGLLPGVLIRNEGLKFV 111


>sp|Q9CFE7|PURQ_LACLA Phosphoribosylformylglycinamidine synthase 1
           OS=Lactococcus lactis subsp. lactis GN=purQ PE=3 SV=1
          Length = 223

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 25/81 (30%), Positives = 38/81 (46%)
 Frame = +2

Query: 203 DERSMLSYQKEVFPYPSILGTVLDCRSLHSFSNNHWLLPESNSLSQEDNAE*FGTCLS*G 382
           DE+S+  +   + P     G  L C ++ SF+N   ++PE   L++E     FGTC    
Sbjct: 35  DEKSLAGFDGVLIPGGFSYGDYLRCGAIASFAN---IMPEIKRLAKEGKPV-FGTCNGFQ 90

Query: 383 Y*IASILLEVHLVSLENKKEV 445
             + S LL   L+  E  K V
Sbjct: 91  ILVESGLLPGVLIRNEGLKFV 111


>sp|Q54WN5|UTP6_DICDI U3 small nucleolar RNA-associated protein 6
           homolog OS=Dictyostelium discoideum GN=utp6 PE=1 SV=1
          Length = 609

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 14  DETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSLML 142
           +E   IKL  + +R   K+   EF+ +    L A+KLK+S ++
Sbjct: 204 EEEEAIKLNLDSLRKSEKIEKDEFITFGKEILSADKLKQSSLI 246


>sp|Q569A2|TSN12_RAT Tetraspanin-12 OS=Rattus norvegicus GN=Tspan12
           PE=2 SV=1
          Length = 305

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 169 KMTLHVSGWQHERLLQLFCFQVSCGIW 89
           K  L +  W    LL +FC +++CG+W
Sbjct: 87  KRNLLLLAWYFGTLLVIFCVELACGVW 113


>sp|Q5R8B5|TSN12_PONAB Tetraspanin-12 OS=Pongo abelii GN=TSPAN12
           PE=2 SV=1
          Length = 305

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 169 KMTLHVSGWQHERLLQLFCFQVSCGIW 89
           K  L +  W    LL +FC +++CG+W
Sbjct: 87  KRNLLLLAWYFGSLLVIFCVELACGVW 113


>sp|Q8BKT6|TSN12_MOUSE Tetraspanin-12 OS=Mus musculus GN=Tspan12
           PE=2 SV=1
          Length = 305

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 169 KMTLHVSGWQHERLLQLFCFQVSCGIW 89
           K  L +  W    LL +FC +++CG+W
Sbjct: 87  KRNLLLLAWYFGTLLVIFCVELACGVW 113


>sp|O95859|TSN12_HUMAN Tetraspanin-12 OS=Homo sapiens GN=TSPAN12
           PE=2 SV=1
          Length = 305

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 169 KMTLHVSGWQHERLLQLFCFQVSCGIW 89
           K  L +  W    LL +FC +++CG+W
Sbjct: 87  KRNLLLLAWYFGSLLVIFCVELACGVW 113
tr_hit_id A9NMU5
Definition tr|A9NMU5|A9NMU5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 47
Score (bit) 56.6
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947218|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_D07, 5'
         (456 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NMU5|A9NMU5_PICSI Putative uncharacterized protein OS=Picea...    57   6e-07
tr|Q6K2G7|Q6K2G7_ORYSJ Os02g0508000 protein OS=Oryza sativa subs...    52   1e-05
tr|B8AIQ1|B8AIQ1_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|A7PHI5|A7PHI5_VITVI Chromosome chr17 scaffold_16, whole genom...    52   1e-05
tr|A5C7S5|A5C7S5_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|B6TMG9|B6TMG9_MAIZE Mitochondrial NADH ubiquinone oxidoreduct...    51   3e-05
tr|A9PHK1|A9PHK1_POPTR Putative uncharacterized protein OS=Popul...    51   3e-05
tr|A9RZZ1|A9RZZ1_PHYPA Predicted protein OS=Physcomitrella paten...    50   7e-05
tr|A9RD88|A9RD88_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|Q56ZK4|Q56ZK4_ARATH Putative uncharacterized protein At3g4868...    37   0.38 
tr|B7GE24|B7GE24_PHATR Predicted protein OS=Phaeodactylum tricor...    37   0.49 
tr|B7GE20|B7GE20_PHATR Predicted protein OS=Phaeodactylum tricor...    37   0.49 
tr|B4HQP4|B4HQP4_DROSE GM22043 OS=Drosophila sechellia GN=GM2204...    36   0.84 
tr|B3LD13|B3LD13_PLAKH Putative uncharacterized protein OS=Plasm...    34   3.2  
tr|A1WFC8|A1WFC8_VEREI Glutamate--cysteine ligase OS=Verminephro...    33   5.4  
tr|A5K8M1|A5K8M1_PLAVI Putative uncharacterized protein OS=Plasm...    33   5.4  
tr|B6KC57|B6KC57_TOXGO NADH-cytochrome B5 reductase, putative OS...    33   9.3  

>tr|A9NMU5|A9NMU5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 264

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 29/47 (61%), Positives = 34/47 (72%)
 Frame = +2

Query: 5   LTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSLMLP 145
           LT DE   I  +A+ +  VA+ H SEFLPYSTAYLE EKLKKSL +P
Sbjct: 217 LTVDEVAAIPKIAKAVSYVAQDHASEFLPYSTAYLEVEKLKKSLAIP 263


>tr|Q6K2G7|Q6K2G7_ORYSJ Os02g0508000 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0052M16.12 PE=2 SV=1
          Length = 258

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 26/48 (54%), Positives = 32/48 (66%)
 Frame = +2

Query: 2   QLTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSLMLP 145
           +LT +E   I  LA  +  + + H SEFLPYSTAYLE EKLKKS  +P
Sbjct: 210 KLTNEEIMEIPKLAVAINDLMQSHFSEFLPYSTAYLEVEKLKKSFSIP 257


>tr|B8AIQ1|B8AIQ1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07358 PE=4 SV=1
          Length = 88

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 26/48 (54%), Positives = 32/48 (66%)
 Frame = +2

Query: 2   QLTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSLMLP 145
           +LT +E   I  LA  +  + + H SEFLPYSTAYLE EKLKKS  +P
Sbjct: 40  KLTNEEIMEIPKLAVAINDLMQSHFSEFLPYSTAYLEVEKLKKSFSIP 87


>tr|A7PHI5|A7PHI5_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017955001
           PE=4 SV=1
          Length = 245

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = +2

Query: 5   LTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKS 133
           LT++ET  I  LA  +  ++  H SEFLPYSTAYLE EKLKKS
Sbjct: 198 LTHEETLEIPKLAVAINDLSTSHFSEFLPYSTAYLEVEKLKKS 240


>tr|A5C7S5|A5C7S5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019404 PE=4 SV=1
          Length = 263

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = +2

Query: 5   LTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKS 133
           LT++ET  I  LA  +  ++  H SEFLPYSTAYLE EKLKKS
Sbjct: 216 LTHEETLEIPKLAVAINDLSTSHFSEFLPYSTAYLEVEKLKKS 258


>tr|B6TMG9|B6TMG9_MAIZE Mitochondrial NADH ubiquinone oxidoreductase
           29 kDa subunit OS=Zea mays PE=2 SV=1
          Length = 262

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = +2

Query: 2   QLTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSLMLP 145
           +LT +E  +I  LA  +  + + H SEFLPYS AYLE EKLKKS  +P
Sbjct: 214 KLTNEEIMDIPKLATAINDLMQSHFSEFLPYSNAYLEVEKLKKSFSIP 261


>tr|A9PHK1|A9PHK1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 251

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +2

Query: 5   LTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSL 136
           LT++ET  I  LA  +  ++K H  EFLPYST YLE EKLKK L
Sbjct: 204 LTHEETLEIPKLAVAINDLSKTHFFEFLPYSTVYLEVEKLKKKL 247


>tr|A9RZZ1|A9RZZ1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_121871 PE=4 SV=1
          Length = 237

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 24/47 (51%), Positives = 33/47 (70%)
 Frame = +2

Query: 2   QLTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSLML 142
           +LT DE  +I  LA+ +R +A+ H  EFLPY TAYLE EKL++  +L
Sbjct: 189 RLTNDEIMSIPKLADGLRELAQEHSQEFLPYGTAYLEVEKLREKHLL 235


>tr|A9RD88|A9RD88_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_111735 PE=4 SV=1
          Length = 240

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 24/46 (52%), Positives = 32/46 (69%)
 Frame = +2

Query: 5   LTYDETHNIKLLAEKMRTVAKMHMSEFLPYSTAYLEAEKLKKSLML 142
           LT DE  +I  LA+ +R +A+ H  EFLPY TAYLE EKL++  +L
Sbjct: 193 LTNDEIMSIPKLADGLRELAQEHAQEFLPYGTAYLEVEKLREKHLL 238


>tr|Q56ZK4|Q56ZK4_ARATH Putative uncharacterized protein At3g48680
           (Fragment) OS=Arabidopsis thaliana GN=At3g48680 PE=2
           SV=1
          Length = 25

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +2

Query: 77  SEFLPYSTAYLEAEKLKKSL 136
           SEFLPYST YLE EK KKSL
Sbjct: 2   SEFLPYSTIYLEVEKFKKSL 21