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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947229
Clone id YMU02A01NGRL0015_D21
Library
Length 586
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_D21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTCGTCAGAAATTCCTAGCCCGTTAGAAGTGGGCGAGGAGAAGAGAAACACCGATCTGAG
CAGCAGATCCACAAGAAGAGAGGCTGCATTGGATCAGACACACAGAGAGAGAGAAAGAGA
GAGAGAGGAGATAAGATGTCGTGCTGCAATGGTAACTGTGGGTGCGGCGCAAACTGTCAA
TGCGCCAGCGGCTGCAAGGGGTGCGGCCGAACTGACAGCCTTGTGCTGTCGAAGGAGGCG
CCTCTCGTTCTCAGTGCCACTGCCTCCGTCTGCCCCAGCTATGAAAGGGCTCTAGGTTTC
GGAGTGGAGAACATCTCTGGGTATCTTGGCTCTCCTACTTCTTGTTTCCCTCTCAACTGA
GCTTAAGGTAGCCTAGTACAAGGGGTTGCCTTAATAACACCAAAAATAATGTATTTGTAT
TTAGTTAATAGTCAGTCGTGCAATTAACATCCATGGATCGCTTGTACATAGTATGCTCAC
CTTTGTAATCTTGGGATTTTGGTAATGATAATGATAATGGCTTAAGCCAAGCCATAAAAT
GCAACACCTTTTAGCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 34.3
E-value 0.42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947229|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_D21, 5'
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    34   0.42 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    33   1.2  
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    32   2.1  
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    32   2.1  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 34.3 bits (77), Expect = 0.42
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -2

Query: 362 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 183
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 182 H*QFAPHPQLPLQHD 138
               A HP L +  D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 362 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 183
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 182 H 180
           H
Sbjct: 201 H 201


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -2

Query: 362 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 183
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 182 H*QFAPHPQLPLQHD 138
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -2

Query: 362 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 183
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 182 H*QFAPHPQLPLQHD 138
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 30
Score (bit) 39.7
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947229|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_D21, 5'
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.11 
tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas reinha...    34   4.6  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 39.7 bits (91), Expect = 0.11
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = -2

Query: 203 HPLQPLAH*QFAPHPQLPLQHDILSPLSLF 114
           HP QPL H Q  PHPQLP QHD+      F
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDMYGATFFF 249


>tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_194715 PE=4 SV=1
          Length = 547

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +3

Query: 156 LWVRRKLSMRQRLQGVRPN--------*QPCAVEGGASRSQCHCLRLPQL*KGSRFRSGE 311
           L +RR L ++ RLQG +PN         QP  +   AS    H L  P      R RSG+
Sbjct: 44  LELRRALELQCRLQGPQPNATGPVLQPRQPLPLPPAASPQLLHDLGTPPTQSSGRLRSGQ 103

Query: 312 HLWVSW 329
             W  W
Sbjct: 104 LTWRYW 109