DK947231 |
Clone id |
YMU02A01NGRL0015_D24 |
Library |
YMU02 |
Length |
517 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_D24. 5' end sequence. |
Accession |
DK947231 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2540Contig1 |
Sequence |
GAAGCAGTGGTATCAACGCAGAGTGACCATTACGGCCGGAAAGCAGTGGTATCAACGCAG AGTGGCCATTACGGCCGGGTGAGGCGGTTGCAAAGGAAGTCAATGAGAAGTACGGGCGCT TGGATTTGATTGTGCACTGTGCTGCTGAATTCATAATACCAGATGAAATTTACCAGAGTT ATATCTGGAGGAGCTTGAACCTGATATTGCAATGCGTTTGTTTGAAGTAAACGCTGTTGG CCCAGTCCTTGTGACTAAGCACTTTTGGGAGCTTCTCAAAATTGGCCACGGCACACACAC TGGCAGGGCTGGAGCTGTGGTGGTTATGATGGGTCACAAATGTTCTTCAATGAAGGATAA TACCTTTGGAAGCTGGTATAGCTATCGAGCGTCAAAAACAGCTTTGAATATGTTTACAAG GAACATGGCAATGGAAGCGGAACGCCGAAAAGATCCAATCCTTTTCACCATCATACATCC GGGAGTTGTGAACACTTTGCACTCAAAGTTCTATGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P21158 |
Definition |
sp|P21158|CSGA_MYXXA C-factor OS=Myxococcus xanthus |
Align length |
94 |
Score (bit) |
49.7 |
E-value |
5.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SVH1 |
Definition |
tr|Q9SVH1|Q9SVH1_ARATH Cell-cell signaling protein csgA-like OS=Arabidopsis thaliana |
Align length |
95 |
Score (bit) |
107.0 |
E-value |
2.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947231|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_D24, 5' (438 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9SVH1|Q9SVH1_ARATH Cell-cell signaling protein csgA-like OS=... 107 2e-22 tr|Q941A7|Q941A7_ARATH AT4g20760/F21C20_110 OS=Arabidopsis thali... 107 2e-22 tr|A7Q4V9|A7Q4V9_VITVI Chromosome chr10 scaffold_50, whole genom... 100 2e-21 tr|B6TKV5|B6TKV5_MAIZE Cell-cell signaling protein csgA-like OS=... 98 5e-21 tr|A7KWQ3|A7KWQ3_ARALP Short-chain dehydrogenase/reductase famil... 102 9e-21 tr|A7KWQ7|A7KWQ7_ARALP Short-chain dehydrogenase/reductase famil... 102 1e-20 tr|A7KWR9|A7KWR9_ARALP Short-chain dehydrogenase/reductase famil... 100 4e-20 tr|A7KWS3|A7KWS3_ARALP Short-chain dehydrogenase/reductase famil... 100 5e-20 tr|A9S9B2|A9S9B2_PHYPA Predicted protein OS=Physcomitrella paten... 96 1e-19 tr|A2XWC0|A2XWC0_ORYSI Putative uncharacterized protein OS=Oryza... 93 6e-18 tr|Q2QMC5|Q2QMC5_ORYSJ cDNA clone:J023113G07, full insert sequen... 93 7e-18 tr|Q0IM03|Q0IM03_ORYSJ Os12g0609500 protein (Fragment) OS=Oryza ... 93 7e-18 tr|A2ZMK7|A2ZMK7_ORYSI Putative uncharacterized protein OS=Oryza... 93 7e-18 tr|B6NUK9|B6NUK9_BRAFL Putative uncharacterized protein OS=Branc... 84 3e-15 tr|B6P0P8|B6P0P8_BRAFL Putative uncharacterized protein OS=Branc... 82 1e-14 tr|A7RW42|A7RW42_NEMVE Predicted protein OS=Nematostella vectens... 82 2e-14 tr|A4RRW5|A4RRW5_OSTLU Predicted protein OS=Ostreococcus lucimar... 81 2e-14 tr|Q01FQ2|Q01FQ2_OSTTA Predicted short chain-type dehydrogenase ... 81 3e-14 tr|Q1NI04|Q1NI04_9SPHN Short-chain dehydrogenase/reductase SDR O... 79 1e-13 tr|A4SZA6|A4SZA6_POLSQ Short-chain dehydrogenase/reductase SDR O... 77 4e-13 tr|B1Y0E1|B1Y0E1_LEPCP Short-chain dehydrogenase/reductase SDR O... 76 7e-13 tr|Q6PHI2|Q6PHI2_DANRE Zgc:65997 OS=Danio rerio GN=zgc:65997 PE=... 75 2e-12 tr|A8E563|A8E563_DANRE Zgc:65997 OS=Danio rerio GN=zgc:65997 PE=... 75 2e-12 tr|B1M899|B1M899_METRJ Short-chain dehydrogenase/reductase SDR O... 75 2e-12 tr|B5XAA2|B5XAA2_SALSA C-factor OS=Salmo salar GN=CSGA PE=2 SV=1 74 3e-12 tr|Q51582|Q51582_PLEBO Putative uncharacterized protein ORF243 O... 74 4e-12 tr|B4WJC4|B4WJC4_9SYNE Oxidoreductase, short chain dehydrogenase... 73 6e-12 tr|A4XWZ2|A4XWZ2_PSEMY Short-chain dehydrogenase/reductase SDR O... 73 8e-12 tr|B2JA01|B2JA01_NOSP7 Short-chain dehydrogenase/reductase SDR O... 72 1e-11 tr|A4VNH8|A4VNH8_PSEU5 Oxidoreductase, short-chain dehydrogenase... 72 1e-11
>tr|Q9SVH1|Q9SVH1_ARATH Cell-cell signaling protein csgA-like OS=Arabidopsis thaliana GN=F21C20.110 PE=2 SV=1 Length = 175
Score = 107 bits (268), Expect = 2e-22 Identities = 50/95 (52%), Positives = 66/95 (69%) Frame = +1
Query: 133 MRLFEVNAVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRA 312 M +EVNAVGP+LV KH W LLK G G+ T R AVV + + S+ DN G W+SYRA Sbjct: 31 MLAYEVNAVGPILVMKHMWPLLKAGGGSGTDREVAVVANLSARVGSIGDNRLGGWHSYRA 90
Query: 313 SKTALNMFTRNMAMEAERRKDPILFTIIHPGVVNT 417 SK+ALN T+N+++E RRKDP+ ++HPG V+T Sbjct: 91 SKSALNQLTKNVSVELGRRKDPVACILLHPGTVDT 125
>tr|Q941A7|Q941A7_ARATH AT4g20760/F21C20_110 OS=Arabidopsis thaliana GN=At4g20760 PE=2 SV=1 Length = 298
Score = 107 bits (268), Expect = 2e-22 Identities = 50/95 (52%), Positives = 66/95 (69%) Frame = +1
Query: 133 MRLFEVNAVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRA 312 M +EVNAVGP+LV KH W LLK G G+ T R AVV + + S+ DN G W+SYRA Sbjct: 154 MLAYEVNAVGPILVMKHMWPLLKAGGGSGTDREVAVVANLSARVGSIGDNRLGGWHSYRA 213
Query: 313 SKTALNMFTRNMAMEAERRKDPILFTIIHPGVVNT 417 SK+ALN T+N+++E RRKDP+ ++HPG V+T Sbjct: 214 SKSALNQLTKNVSVELGRRKDPVACILLHPGTVDT 248
>tr|A7Q4V9|A7Q4V9_VITVI Chromosome chr10 scaffold_50, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029871001 PE=4 SV=1 Length = 289
Score = 99.8 bits (247), Expect(2) = 2e-21 Identities = 45/92 (48%), Positives = 63/92 (68%) Frame = +1
Query: 142 FEVNAVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRASKT 321 +EVNAVGP+LV KH W LL G G+ T R AVV + + S+ DN G W+SYR+SK Sbjct: 148 YEVNAVGPILVIKHMWPLLTAGGGSGTERDVAVVANLSARVGSIGDNRLGGWHSYRSSKA 207
Query: 322 ALNMFTRNMAMEAERRKDPILFTIIHPGVVNT 417 ALN T+ +++E R+KDP++ ++HPG V+T Sbjct: 208 ALNQLTKTISVEFVRKKDPVICLLLHPGTVDT 239
Score = 26.2 bits (56), Expect(2) = 2e-21 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2
Query: 2 EAVAKEVNEKYGRLDLIVHCAAEFIIPD 85 EA A + E+YG L+L+++ + IP+ Sbjct: 101 EASANSIRERYGSLNLLINASGILSIPN 128
>tr|B6TKV5|B6TKV5_MAIZE Cell-cell signaling protein csgA-like OS=Zea mays PE=2 SV=1 Length = 273
Score = 97.8 bits (242), Expect(2) = 5e-21 Identities = 49/95 (51%), Positives = 64/95 (67%) Frame = +1
Query: 133 MRLFEVNAVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRA 312 M +EVNAVGP+LV KH W LLKIG + T R A+V M + SS+ DN G W++YRA Sbjct: 130 MLAYEVNAVGPILVIKHMWPLLKIGGRSETRRGFALVANMSARVSSIGDNALGGWHAYRA 189
Query: 313 SKTALNMFTRNMAMEAERRKDPILFTIIHPGVVNT 417 SKTALN T+ +++E RKD I ++HPG V+T Sbjct: 190 SKTALNQLTKTVSVEF-GRKDNIACVLLHPGTVDT 223
Score = 26.9 bits (58), Expect(2) = 5e-21 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2
Query: 2 EAVAKEVNEKYGRLDLIVHCAAEFIIPDEI 91 EA A + E +G LDL+++ A IP+ I Sbjct: 86 EAAAASITETHGSLDLLINSAGILSIPNVI 115
>tr|A7KWQ3|A7KWQ3_ARALP Short-chain dehydrogenase/reductase family protei (Fragment) OS=Arabidopsis lyrata subsp. petraea GN=s4 PE=4 SV=1 Length = 101
Score = 102 bits (254), Expect = 9e-21 Identities = 48/88 (54%), Positives = 62/88 (70%) Frame = +1
Query: 154 AVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRASKTALNM 333 AVGPVLV KH W LLK G G+ T R AVV + + S+ DN G W+SYRASKTALN Sbjct: 1 AVGPVLVMKHMWPLLKAGGGSGTEREVAVVANLSARVGSIGDNRLGGWHSYRASKTALNQ 60
Query: 334 FTRNMAMEAERRKDPILFTIIHPGVVNT 417 T+N+++E RRKDP++ ++HPG V+T Sbjct: 61 LTKNVSVELGRRKDPVVCILLHPGTVDT 88
>tr|A7KWQ7|A7KWQ7_ARALP Short-chain dehydrogenase/reductase family protei (Fragment) OS=Arabidopsis lyrata subsp. petraea GN=s4 PE=4 SV=1 Length = 101
Score = 102 bits (253), Expect = 1e-20 Identities = 47/88 (53%), Positives = 62/88 (70%) Frame = +1
Query: 154 AVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRASKTALNM 333 AVGP+LV KH W LLK G G+ T R AVV + + S+ DN G W+SYRASKTALN Sbjct: 1 AVGPILVMKHMWPLLKAGGGSGTEREVAVVANLSARVGSIGDNRLGGWHSYRASKTALNQ 60
Query: 334 FTRNMAMEAERRKDPILFTIIHPGVVNT 417 T+N+++E RRKDP++ ++HPG V+T Sbjct: 61 LTKNVSVELGRRKDPVVCILLHPGTVDT 88
>tr|A7KWR9|A7KWR9_ARALP Short-chain dehydrogenase/reductase family protei (Fragment) OS=Arabidopsis lyrata subsp. petraea GN=s4 PE=4 SV=1 Length = 101
Score = 100 bits (249), Expect = 4e-20 Identities = 48/88 (54%), Positives = 61/88 (69%) Frame = +1
Query: 154 AVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRASKTALNM 333 AVGPVLV KH W LLK G G+ T R AVV + + S+ DN G W SYRASKTALN Sbjct: 1 AVGPVLVMKHMWPLLKAGGGSGTEREVAVVANLSARVGSIGDNRLGGWPSYRASKTALNQ 60
Query: 334 FTRNMAMEAERRKDPILFTIIHPGVVNT 417 T+N+++E RRKDP++ ++HPG V+T Sbjct: 61 LTKNVSVELGRRKDPVVCILLHPGTVDT 88
>tr|A7KWS3|A7KWS3_ARALP Short-chain dehydrogenase/reductase family protein (Fragment) OS=Arabidopsis lyrata subsp. petraea GN=s4 PE=2 SV=1 Length = 101
Score = 100 bits (248), Expect = 5e-20 Identities = 46/88 (52%), Positives = 61/88 (69%) Frame = +1
Query: 154 AVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRASKTALNM 333 AVGP+LV KH W LLK G G+ T R AVV + + S+ DN G W+SYRASK+ALN Sbjct: 1 AVGPILVMKHMWPLLKAGGGSGTDREVAVVANLSARVGSIGDNRLGGWHSYRASKSALNQ 60
Query: 334 FTRNMAMEAERRKDPILFTIIHPGVVNT 417 T+N+++E RRKDP+ ++HPG V+T Sbjct: 61 LTKNVSVELGRRKDPVACILLHPGTVDT 88
>tr|A9S9B2|A9S9B2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_126089 PE=3 SV=1 Length = 280
Score = 95.5 bits (236), Expect(2) = 1e-19 Identities = 44/97 (45%), Positives = 65/97 (67%) Frame = +1
Query: 139 LFEVNAVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRASK 318 ++++NAVGP+LV KH LLK G G T R A++ + + S+ DN G WY+YRASK Sbjct: 138 VYQINAVGPLLVMKHMAALLKKGGGKGTSRPAAIIANLSARVGSIGDNGTGGWYAYRASK 197
Query: 319 TALNMFTRNMAMEAERRKDPILFTIIHPGVVNTLHSK 429 +ALN T+ ++E R++DPI+ ++HPG V+T SK Sbjct: 198 SALNQLTKTASLEFARKRDPIVSILLHPGTVDTDLSK 234
Score = 24.6 bits (52), Expect(2) = 1e-19 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +2
Query: 2 EAVAKEVNEKYGRLDLIVHCA 64 E AK +++++GRLDL+++ A Sbjct: 91 EEAAKLISKEHGRLDLLINTA 111
>tr|A2XWC0|A2XWC0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_16948 PE=4 SV=1 Length = 173
Score = 93.2 bits (230), Expect = 6e-18 Identities = 45/92 (48%), Positives = 61/92 (66%) Frame = +1
Query: 142 FEVNAVGPVLVTKHFWELLKIGHGTHTGRAGAVVVMMGHKCSSMKDNTFGSWYSYRASKT 321 +EVNAVGP+LV KH W LK G + TGR ++V M + S+ DN G W+SYRASKT Sbjct: 33 YEVNAVGPILVIKHMWPFLKAGGRSETGRGFSLVANMSARVGSIGDNGLGGWHSYRASKT 92
Query: 322 ALNMFTRNMAMEAERRKDPILFTIIHPGVVNT 417 ALN T+ +++E +KD I ++HPG V+T Sbjct: 93 ALNQLTKTVSVEL-GKKDNIACILLHPGTVDT 123
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