DK947234 |
Clone id |
YMU02A01NGRL0015_E03 |
Library |
YMU02 |
Length |
330 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_E03. 5' end sequence. |
Accession |
DK947234 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2Contig2 |
Sequence |
AAGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGC GCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTG CAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAAT TTAGTTGGCATGAATGCCTGCTTCCCATTTCCCACTGGCGCCTAACAAGCTTGCTCTTAT GAGCTTTTGTGTCCCAGCCACTTTGCATACATAATGAAACAACTTCCCAGTGGTGGCTTC ACTGCCAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22573 |
Definition |
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis |
Align length |
50 |
Score (bit) |
76.3 |
E-value |
5.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947234|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_E03, 5' (306 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 76 5e-14 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 76 5e-14 sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 75 1e-13 sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 74 2e-13 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 74 2e-13 sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 74 3e-13 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 74 3e-13 sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 73 5e-13 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 72 7e-13 sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 72 7e-13 sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 72 7e-13 sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha... 72 7e-13 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 72 7e-13 sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 72 9e-13 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 72 1e-12 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 72 1e-12 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 72 1e-12 sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha... 72 1e-12 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 72 1e-12 sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chai... 71 1e-12 sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12 sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12 sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 71 2e-12 sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai... 71 2e-12 sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha... 71 2e-12 sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha... 71 2e-12
>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1 Length = 179
Score = 76.3 bits (186), Expect = 5e-14 Identities = 35/50 (70%), Positives = 40/50 (80%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 129 KLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1 Length = 179
Score = 76.3 bits (186), Expect = 5e-14 Identities = 35/50 (70%), Positives = 40/50 (80%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 129 KLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1 Length = 179
Score = 75.1 bits (183), Expect = 1e-13 Identities = 34/50 (68%), Positives = 40/50 (80%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V++P Sbjct: 129 KLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 74.3 bits (181), Expect = 2e-13 Identities = 33/50 (66%), Positives = 39/50 (78%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLPMFGC D+A V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP Sbjct: 128 KLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 73.9 bits (180), Expect = 2e-13 Identities = 31/50 (62%), Positives = 39/50 (78%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLPMFGC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP Sbjct: 130 KLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179
>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1 Length = 179
Score = 73.6 bits (179), Expect = 3e-13 Identities = 34/50 (68%), Positives = 39/50 (78%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLPMFGC AA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 129 KLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1 Length = 180
Score = 73.6 bits (179), Expect = 3e-13 Identities = 32/51 (62%), Positives = 38/51 (74%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153 KLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ F+ KP+ Sbjct: 128 KLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1 Length = 82
Score = 72.8 bits (177), Expect = 5e-13 Identities = 31/50 (62%), Positives = 38/50 (76%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP Sbjct: 27 KLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76
>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1 Length = 171
Score = 72.4 bits (176), Expect = 7e-13 Identities = 32/50 (64%), Positives = 39/50 (78%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD RQVQ F+V KP Sbjct: 121 KLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1 Length = 189
Score = 72.4 bits (176), Expect = 7e-13 Identities = 33/50 (66%), Positives = 38/50 (76%) Frame = +1
Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150 KLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD RQVQ F+V KP Sbjct: 137 KLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
51 |
Score (bit) |
93.6 |
E-value |
4.0e-18 |
Report |
|