DK947234
Clone id YMU02A01NGRL0015_E03
Library
Length 330
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_E03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AAGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGC
GCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTG
CAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAAT
TTAGTTGGCATGAATGCCTGCTTCCCATTTCCCACTGGCGCCTAACAAGCTTGCTCTTAT
GAGCTTTTGTGTCCCAGCCACTTTGCATACATAATGAAACAACTTCCCAGTGGTGGCTTC
ACTGCCAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O22573
Definition sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis
Align length 50
Score (bit) 76.3
E-value 5.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947234|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_E03, 5'
(306 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 76 5e-14
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 76 5e-14
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 75 1e-13
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 74 2e-13
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 74 2e-13
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 74 3e-13
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 74 3e-13
sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 73 5e-13
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 72 7e-13
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 72 7e-13
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 72 7e-13
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha... 72 7e-13
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 72 7e-13
sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 72 9e-13
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 72 1e-12
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 72 1e-12
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 72 1e-12
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha... 72 1e-12
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 72 1e-12
sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chai... 71 1e-12
sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12
sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12
sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 71 1e-12
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 71 2e-12
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai... 71 2e-12
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha... 71 2e-12
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha... 71 2e-12

>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain
3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2
SV=1
Length = 179

Score = 76.3 bits (186), Expect = 5e-14
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP
Sbjct: 129 KLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain
2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2
SV=1
Length = 179

Score = 76.3 bits (186), Expect = 5e-14
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP
Sbjct: 129 KLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain
1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2
SV=1
Length = 179

Score = 75.1 bits (183), Expect = 1e-13
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V++P
Sbjct: 129 KLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 74.3 bits (181), Expect = 2e-13
Identities = 33/50 (66%), Positives = 39/50 (78%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC D+A V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP
Sbjct: 128 KLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
Length = 182

Score = 73.9 bits (180), Expect = 2e-13
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP
Sbjct: 130 KLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain
5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2
SV=1
Length = 179

Score = 73.6 bits (179), Expect = 3e-13
Identities = 34/50 (68%), Positives = 39/50 (78%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC AA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP
Sbjct: 129 KLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
Length = 180

Score = 73.6 bits (179), Expect = 3e-13
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153
KLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ F+ KP+
Sbjct: 128 KLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain
(Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1
Length = 82

Score = 72.8 bits (177), Expect = 5e-13
Identities = 31/50 (62%), Positives = 38/50 (76%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 27 KLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171

Score = 72.4 bits (176), Expect = 7e-13
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD RQVQ F+V KP
Sbjct: 121 KLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
Length = 189

Score = 72.4 bits (176), Expect = 7e-13
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD RQVQ F+V KP
Sbjct: 137 KLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 51
Score (bit) 93.6
E-value 4.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947234|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_E03, 5'
(306 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 94 4e-18
tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small c... 78 3e-13
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza... 76 7e-13
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c... 76 7e-13
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 75 1e-12
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 75 1e-12
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 75 1e-12
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 75 2e-12
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 75 2e-12
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c... 75 2e-12
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 75 2e-12
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 75 2e-12
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c... 75 2e-12
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 75 2e-12
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 75 2e-12
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c... 74 3e-12
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 74 3e-12
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c... 74 4e-12
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c... 74 5e-12
tr|Q68BK3|Q68BK3_NANBA Ribulose bisphosphate carboxylase small c... 73 6e-12
tr|Q14K75|Q14K75_PLAAC Ribulose bisphosphate carboxylase small c... 73 8e-12

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 93.6 bits (231), Expect = 4e-18
Identities = 44/51 (86%), Positives = 48/51 (94%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153
KLPMFGC D+ +VLREIAECAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 123 KLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Pteris vittata GN=rbcS3 PE=2 SV=1
Length = 43

Score = 77.8 bits (190), Expect = 3e-13
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +1

Query: 28 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153
+A+VLREIAECAKEYP AFIRVLGFDAKRQVQV+GFLVQ+PS
Sbjct: 1 SASVLREIAECAKEYPSAFIRVLGFDAKRQVQVAGFLVQRPS 42


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
chain OS=Lactuca sativa PE=2 SV=1
Length = 181

Score = 76.3 bits (186), Expect = 7e-13
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC D+A V++E+ EC KEYP AFIRV+GFD+ RQVQ F+V KP
Sbjct: 128 KLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small
chain OS=Oryza sativa subsp. japonica GN=P0463E12.1 PE=3
SV=1
Length = 183

Score = 76.3 bits (186), Expect = 7e-13
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC DAAAVLRE+ EC +EYP+AFIR++ FD+ RQ Q F+V KP
Sbjct: 120 KLPMFGCSDAAAVLREVEECRREYPDAFIRLIAFDSSRQCQCMSFVVHKP 169


>tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05882 PE=4 SV=1
Length = 183

Score = 76.3 bits (186), Expect = 7e-13
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 150
KLPMFGC DAAAVLRE+ EC +EYP+AFIR++ FD+ RQ Q F+V KP
Sbjct: 120 KLPMFGCSDAAAVLREVEECRREYPDAFIRLIAFDSSRQCQCMSFVVHKP 169


>tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_201189 PE=3 SV=1
Length = 182

Score = 76.3 bits (186), Expect = 7e-13
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153
KLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 132 KLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_109367 PE=3 SV=1
Length = 182

Score = 76.3 bits (186), Expect = 7e-13
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153
KLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 132 KLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_110675 PE=3 SV=1
Length = 182

Score = 76.3 bits (186), Expect = 7e-13
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153
KLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 132 KLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233894 PE=3 SV=1
Length = 182

Score = 76.3 bits (186), Expect = 7e-13
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153
KLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 132 KLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_106210 PE=3 SV=1
Length = 182

Score = 76.3 bits (186), Expect = 7e-13
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = +1

Query: 1 KLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 153
KLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 132 KLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182