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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947243
Clone id YMU02A01NGRL0015_E12
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_E12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATGAGGTGGAGGAGATATCTGCAGAGATTGCCCACAAGCGCGTCAAGCAGTCTGAGACT
AAGGATCCTCTTGATGAGTTTTGCAAGGATGCTCCAGAAGCTGATGAATGCAGGGTCTAT
GAAGATTAGGTTACCTGCAACCTGGGCAAGGTTCTCCATTCACCTTTACTTTACTAGAAT
GTAAGTAAAGTGCTGCTTGATTGTATATTGATGACACACTTAATTGGAGTAATTTTCCCT
TATCCCATTAGACACATCATGGCTCTGTTGTTTTGGCTAATGGTTGCCGGATGCTGGCTG
CCGATCTTCACTCAGATGTTAGCCCAATTTGTTCGGGAATTATGAAGTGTGATAATGTTT
ACTGATTAGTGTAGACTCCCATGCATAGCTGTGCCGGTGGAGAATGGTGTGCTTAATGCC
TTGTGGTCCTTCCGATGTTGTCCTATGGATTTTACCTTGAATCTCGATAATTGTAGTCTA
TAANAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A6Q0K5
Definition sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii
Align length 45
Score (bit) 58.5
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947243|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_E12, 5'
         (481 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas ...    59   2e-08
sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,...    35   0.14 
sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,...    33   0.89 
sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, c...    32   1.2  

>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas
           reinhardtii GN=cp12 PE=1 SV=1
          Length = 80

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1   DEVEEISAEIAHKR--VKQSET-KDPLDEFCKDAPEADECRVYED 126
           D VEE+SA ++HK+  VK   T  DPL+ FCKDAP+ADECRVYED
Sbjct: 36  DTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 80


>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1
          Length = 451

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 64  DPLDEFCKDAPEADECRVYE 123
           DPL++FCKD P  +EC++YE
Sbjct: 432 DPLEDFCKDNPADEECKLYE 451


>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2
          Length = 447

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 64  DPLDEFCKDAPEADECRVYE 123
           DPL++FCK  P  +EC+VY+
Sbjct: 428 DPLEDFCKTNPADEECKVYD 447


>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B,
           chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2
          Length = 451

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 64  DPLDEFCKDAPEADECRVYE 123
           DPL++FC+  P  +EC+VYE
Sbjct: 432 DPLEDFCETNPADEECKVYE 451
tr_hit_id A9RS50
Definition tr|A9RS50|A9RS50_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 60.1
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947243|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_E12, 5'
         (481 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RS50|A9RS50_PHYPA Predicted protein (Fragment) OS=Physcomit...    60   5e-08
tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea...    60   5e-08
tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert seque...    59   9e-08
tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza...    59   9e-08
tr|Q20FC7|Q20FC7_MESVI CP12 OS=Mesostigma viride GN=CP12 PE=2 SV=1     59   2e-07
tr|A8IZ71|A8IZ71_CHLRE Small protein associating with GAPDH and ...    59   2e-07
tr|A9RZE2|A9RZE2_PHYPA Predicted protein (Fragment) OS=Physcomit...    58   2e-07
tr|B1XL07|B1XL07_SYNP2 CP12 domain protein OS=Synechococcus sp. ...    58   3e-07
tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subs...    57   3e-07
tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza...    57   3e-07
tr|Q2WBV8|Q2WBV8_CYNSC Chloroplast protein 12 (Fragment) OS=Cyna...    57   6e-07
tr|B7FGI5|B7FGI5_MEDTR Putative uncharacterized protein OS=Medic...    57   6e-07
tr|A9T3K8|A9T3K8_PHYPA Predicted protein (Fragment) OS=Physcomit...    57   6e-07
tr|A1YQX6|A1YQX6_VOLCA Calvin cycle protein CP12 OS=Volvox carte...    57   6e-07
tr|Q9SMI6|Q9SMI6_CYAPA Putative uncharacterized protein (Fragmen...    56   8e-07
tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Popul...    56   1e-06
tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Popul...    56   1e-06
tr|B4WRK8|B4WRK8_9SYNE Putative uncharacterized protein OS=Synec...    55   1e-06
tr|O24136|O24136_TOBAC CP12 (Chloroplast protein 12) OS=Nicotian...    55   1e-06
tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata G...    55   1e-06
tr|A7QEC8|A7QEC8_VITVI Chromosome chr1 scaffold_84, whole genome...    55   2e-06
tr|Q5QET3|Q5QET3_ARAHY Auxin-induced putative CP12 domain-contai...    55   2e-06
tr|A9P0H0|A9P0H0_PICSI Putative uncharacterized protein OS=Picea...    54   3e-06
tr|Q2PC90|Q2PC90_GALSU Small chloroplast protein OS=Galdieria su...    54   5e-06
tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1                    54   5e-06
tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1                    54   5e-06
tr|A1YMY3|A1YMY3_BRACM Putative chloroplast protein CP12 OS=Bras...    54   5e-06
tr|Q9LZP9|Q9LZP9_ARATH CP12 protein-like protein OS=Arabidopsis ...    53   7e-06
tr|Q8LC81|Q8LC81_ARATH CP12 protein-like protein OS=Arabidopsis ...    53   7e-06
tr|O24292|O24292_PEA CP12 OS=Pisum sativum PE=2 SV=1                   53   7e-06

>tr|A9RS50|A9RS50_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_118561 PE=4 SV=1
          Length = 70

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 24/42 (57%), Positives = 34/42 (80%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSETKDPLDEFCKDAPEADECRVYED 126
           DEVEE++AE AH+R ++  + DPL+++C D PE+DECR YED
Sbjct: 29  DEVEELTAEAAHQRDREKTSGDPLEKYCADNPESDECRTYED 70


>tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 141

 Score = 60.1 bits (144), Expect = 5e-08
 Identities = 28/42 (66%), Positives = 32/42 (76%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSETKDPLDEFCKDAPEADECRVYED 126
           DEVEE+SA  +H R K  + KDPL+EFCKD PE DECR YED
Sbjct: 101 DEVEELSAARSHMREKD-KAKDPLEEFCKDNPETDECRTYED 141


>tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0035H10.18 PE=2 SV=1
          Length = 124

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSETKDPLDEFCKDAPEADECRVYED 126
           DEVEE+SA  +H R K  ET DPL+ +CKD PE DECR Y++
Sbjct: 83  DEVEELSAAASHARDKLKETSDPLEAYCKDNPETDECRTYDN 124


>tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01556 PE=4 SV=1
          Length = 124

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSETKDPLDEFCKDAPEADECRVYED 126
           DEVEE+SA  +H R K  ET DPL+ +CKD PE DECR Y++
Sbjct: 83  DEVEELSAAASHARDKLKETSDPLEAYCKDNPETDECRTYDN 124


>tr|Q20FC7|Q20FC7_MESVI CP12 OS=Mesostigma viride GN=CP12 PE=2 SV=1
          Length = 131

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSET--KDPLDEFCKDAPEADECRVYED 126
           DEVEE+SA  + K+ K+ E   KDPL++FC+D PE DECRVYED
Sbjct: 88  DEVEELSAAASDKKKKEKEIAKKDPLEKFCEDNPETDECRVYED 131


>tr|A8IZ71|A8IZ71_CHLRE Small protein associating with GAPDH and PRK
           OS=Chlamydomonas reinhardtii GN=CP12 PE=4 SV=1
          Length = 107

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1   DEVEEISAEIAHKR--VKQSET-KDPLDEFCKDAPEADECRVYED 126
           D VEE+SA ++HK+  VK   T  DPL+ FCKDAP+ADECRVYED
Sbjct: 63  DTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107


>tr|A9RZE2|A9RZE2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_121814 PE=4 SV=1
          Length = 67

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSETKDPLDEFCKDAPEADECRVYED 126
           D VEE++AE AH+R ++  + DPL+++C D PE DECR YED
Sbjct: 26  DNVEELTAEAAHQRDREKSSGDPLEKYCADNPETDECRTYED 67


>tr|B1XL07|B1XL07_SYNP2 CP12 domain protein OS=Synechococcus sp.
           (strain ATCC 27264 / PCC 7002 / PR-6)
           GN=SYNPCC7002_A1264 PE=4 SV=1
          Length = 73

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/42 (61%), Positives = 33/42 (78%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSETKDPLDEFCKDAPEADECRVYED 126
           D VEE+ AE AH+R K+ E K PL++FC D P+ADECR+YED
Sbjct: 33  DAVEELQAEAAHQREKEPE-KSPLEKFCDDNPDADECRLYED 73


>tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0306800 PE=2 SV=1
          Length = 131

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSETKDPLDEFCKDAPEADECRVYED 126
           DEVEE+SA  +H R ++ ++ DPL+E+CKD PE DECR YED
Sbjct: 91  DEVEELSAAASHARDRKKDS-DPLEEYCKDNPETDECRTYED 131


>tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11237 PE=4 SV=1
          Length = 131

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = +1

Query: 1   DEVEEISAEIAHKRVKQSETKDPLDEFCKDAPEADECRVYED 126
           DEVEE+SA  +H R ++ ++ DPL+E+CKD PE DECR YED
Sbjct: 91  DEVEELSAAASHARDRKKDS-DPLEEYCKDNPETDECRTYED 131