DK947249 |
Clone id |
YMU02A01NGRL0015_E18 |
Library |
YMU02 |
Length |
510 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_E18. 5' end sequence. |
Accession |
DK947249 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL307Contig1 |
Sequence |
CTGCCATCATTAAGGCTCGCAAGCTTTCAAGCGCTCTTTCTGCAGTAAGTTCTGCCTGTG ATCATATTCGTGACTGGGTGCTTGGAACTCCTAAGGGAACATGGGTGTCCATGGGTGTCT ATTCTGATGGGTCTTATGATGTGCCCCCGGGCCTCATCTATTCTTACCCTGTCACTTGTG AGAATGGCAACTGGTCGATTGTGCAAGGTTTGTCTGTTGATGACTTCTCCAGGAAGAAGC TGGTTGCAACTGCTGATGAGCTGACAGAGGAAAAGGCAATGGCATATTCCTGCATCAGTA GTTAGGTGCTGGAATTTGTAGTTTTTTTAAGAGAAAATCTTAGCGTGGTCTGTGGCAATG AGGAACATAGGTAACCATACTTGTACTCCCATTCAATAATTGTCCAGTGAAATTTTTGGC TTGCAAACTGTTAAAAGCTGGAAGTCAGTGTTCAGAGTTACCTGGATGTGTTCTTCTTTG TAAGACTTCTTGTTACATCTCCTTTCAGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48905 |
Definition |
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa |
Align length |
99 |
Score (bit) |
150.0 |
E-value |
3.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947249|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_E18, 5' (510 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medica... 150 3e-36 sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesemb... 148 2e-35 sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea ma... 147 3e-35 sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza ... 146 5e-35 sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Ara... 146 5e-35 sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta v... 145 1e-34 sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Ara... 145 1e-34 sp|Q0VQ52|MDH_ALCBS Malate dehydrogenase OS=Alcanivorax borkumen... 114 3e-25 sp|Q21K60|MDH_SACD2 Malate dehydrogenase OS=Saccharophagus degra... 113 5e-25 sp|Q1IWC9|MDH_DEIGD Malate dehydrogenase OS=Deinococcus geotherm... 110 5e-24 sp|A1R2B5|MDH_ARTAT Malate dehydrogenase OS=Arthrobacter auresce... 110 5e-24 sp|Q0ABE6|MDH_ALHEH Malate dehydrogenase OS=Alkalilimnicola ehrl... 107 2e-23 sp|A1WV94|MDH_HALHL Malate dehydrogenase OS=Halorhodospira halop... 107 3e-23 sp|Q54VM2|MDHC_DICDI Probable malate dehydrogenase 3 OS=Dictyost... 105 1e-22 sp|Q7YRU4|MDHC_FELCA Malate dehydrogenase, cytoplasmic OS=Felis ... 105 2e-22 sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic OS=Homo s... 104 2e-22 sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyost... 104 2e-22 sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic OS=Sus scro... 103 4e-22 sp|Q6PAB3|MDHC_XENLA Malate dehydrogenase, cytoplasmic OS=Xenopu... 103 6e-22 sp|Q1Q932|MDH_PSYCK Malate dehydrogenase OS=Psychrobacter cryoha... 102 1e-21 sp|Q3T145|MDHC_BOVIN Malate dehydrogenase, cytoplasmic OS=Bos ta... 102 1e-21 sp|P61973|MDH_BDEBA Malate dehydrogenase OS=Bdellovibrio bacteri... 101 2e-21 sp|A1K5Q9|MDH_AZOSB Malate dehydrogenase OS=Azoarcus sp. (strain... 101 2e-21 sp|P14152|MDHC_MOUSE Malate dehydrogenase, cytoplasmic OS=Mus mu... 101 2e-21 sp|O88989|MDHC_RAT Malate dehydrogenase, cytoplasmic OS=Rattus n... 101 2e-21 sp|Q9RXI8|MDH_DEIRA Malate dehydrogenase OS=Deinococcus radiodur... 100 4e-21 sp|Q5ZME2|MDHC_CHICK Malate dehydrogenase, cytoplasmic OS=Gallus... 100 4e-21 sp|Q5YTI1|MDH_NOCFA Malate dehydrogenase OS=Nocardia farcinica G... 100 7e-21 sp|Q6DIY9|MDHC_XENTR Malate dehydrogenase, cytoplasmic OS=Xenopu... 100 7e-21 sp|P61976|MDH_MYCPA Malate dehydrogenase OS=Mycobacterium paratu... 99 9e-21
>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1 Length = 332
Score = 150 bits (379), Expect = 3e-36 Identities = 71/99 (71%), Positives = 81/99 (81%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKARK CDHIRDWVLGTP+GT+VSMGVYSDGSY+VP GLIYS+PVTC Sbjct: 234 AIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCA 293
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEKAMAYSCIS 299 NG W IVQGLS+D+FSRKKL TA+ELTEEK +A+SC+S Sbjct: 294 NGEWKIVQGLSIDEFSRKKLDLTAEELTEEKNLAHSCLS 332
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1 Length = 332
Score = 148 bits (373), Expect = 2e-35 Identities = 68/99 (68%), Positives = 79/99 (79%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKARK CDHI DWVLGTP+GTWVSMGVYSDGSY+VP G+IYS+PVTC+ Sbjct: 234 AIIKARKLSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCK 293
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEKAMAYSCIS 299 NG W+IVQGL +DD SRKK+ ATA EL EEK +AYSC++ Sbjct: 294 NGEWTIVQGLPIDDDSRKKMDATAAELVEEKTLAYSCLT 332
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2 Length = 332
Score = 147 bits (371), Expect = 3e-35 Identities = 69/98 (70%), Positives = 77/98 (78%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKARK CDHIRDWVLGTP+GT+VSMGVYSDGSY VP GLIYS+PVTC Sbjct: 234 AIIKARKFSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCS 293
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEKAMAYSCI 296 G W IVQGL +D+FSRKK+ ATA ELTEEK +AYSC+ Sbjct: 294 GGEWKIVQGLPIDEFSRKKMDATAQELTEEKTLAYSCL 331
>sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3 Length = 332
Score = 146 bits (369), Expect = 5e-35 Identities = 68/99 (68%), Positives = 79/99 (79%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKARK CDHIRDWVLGTP+GT+VSMGVYSDGSY VP GLIYS+PVTC Sbjct: 234 AIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCS 293
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEKAMAYSCIS 299 G W+IVQGL +D+FSRKK+ ATA EL+EEK +AYSC++ Sbjct: 294 GGEWTIVQGLPIDEFSRKKMDATAQELSEEKTLAYSCLN 332
>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2 Length = 332
Score = 146 bits (369), Expect = 5e-35 Identities = 69/99 (69%), Positives = 79/99 (79%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKARK CDHIRDWVLGTP+GT+VSMGVYSDGSY VP GLIYS+PVTC Sbjct: 234 AIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCR 293
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEKAMAYSCIS 299 NG+WSIVQGL +D+ SRKK+ TA+EL EEK +AYSC+S Sbjct: 294 NGDWSIVQGLPIDEVSRKKMDLTAEELKEEKDLAYSCLS 332
>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1 Length = 332
Score = 145 bits (366), Expect = 1e-34 Identities = 66/99 (66%), Positives = 79/99 (79%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKARK CDHIRDWVLGTP+GTWVSMGVYSDGSY+VP G+IYS+PVTC+ Sbjct: 234 AIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCK 293
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEKAMAYSCIS 299 +G W IVQGL +D+ SR+K+ AT EL EEKA+AYSC++ Sbjct: 294 DGEWKIVQGLPIDEVSRQKMDATGAELVEEKALAYSCLT 332
>sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1 Length = 332
Score = 145 bits (366), Expect = 1e-34 Identities = 68/99 (68%), Positives = 79/99 (79%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKARK CDHIRDWV+GTP+GT+VSMGVYSDGSY+VP GLIYS+PVTC Sbjct: 234 AIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCR 293
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEKAMAYSCIS 299 NG W+IVQGL +DD SRKK+ TA+EL EEK +AYSC+S Sbjct: 294 NGEWTIVQGLPIDDASRKKMDLTAEELKEEKDLAYSCLS 332
>sp|Q0VQ52|MDH_ALCBS Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1 Length = 328
Score = 114 bits (285), Expect = 3e-25 Identities = 53/91 (58%), Positives = 64/91 (70%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKAR DH+R W LGT +G WVSMG+YSDGSY + GLIYS+P TC+ Sbjct: 230 AIIKARGASSAASAANAAVDHMRSWALGTDEGDWVSMGIYSDGSYGIQEGLIYSFPCTCK 289
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEK 275 NG+W+IVQGL V+DFSR K+ AT EL EE+ Sbjct: 290 NGDWTIVQGLEVNDFSRGKMQATEQELAEER 320
>sp|Q21K60|MDH_SACD2 Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1 Length = 327
Score = 113 bits (283), Expect = 5e-25 Identities = 52/91 (57%), Positives = 64/91 (70%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AIIKAR H+RDW LGTP+ WVSMGVYSDGSY + GLIYS+P C+ Sbjct: 228 AIIKARGASSAASAANAAIFHMRDWALGTPENDWVSMGVYSDGSYGIEEGLIYSFPCVCK 287
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEK 275 NG+W IVQGL++D+FSR K+ AT +EL EE+ Sbjct: 288 NGDWEIVQGLTIDEFSRAKMTATENELKEER 318
>sp|Q1IWC9|MDH_DEIGD Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1 Length = 334
Score = 110 bits (274), Expect = 5e-24 Identities = 52/91 (57%), Positives = 62/91 (68%) Frame = +3
Query: 3 AIIKARKXXXXXXXXXXXCDHIRDWVLGTPKGTWVSMGVYSDGSYDVPPGLIYSYPVTCE 182 AII+AR DH+RDW LGTP+G WVSM V SDGSY +P GLIY +PV C Sbjct: 234 AIIEARGASSAASAASAAIDHMRDWALGTPEGEWVSMAVPSDGSYGIPEGLIYGFPVRCR 293
Query: 183 NGNWSIVQGLSVDDFSRKKLVATADELTEEK 275 NG + IVQGL + DFSR+K+ ATA EL EE+ Sbjct: 294 NGQYEIVQGLEISDFSRQKMDATAKELEEER 324
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NVT9 |
Definition |
tr|A9NVT9|A9NVT9_PICSI Malate dehydrogenase OS=Picea sitchensis |
Align length |
98 |
Score (bit) |
164.0 |
E-value |
2.0e-39 |
Report |
|