NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947261
Clone id YMU02A01NGRL0015_F09
Library
Length 752
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_F09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGAGAAGGCTATTTCATGCCATATCTCACCAGTCCATCGGTTGGCTAGCTACTCGCGGG
ACGCAAGTGCCTTCTCCAGTCTCCCATCTCTGCGATCCTGTAAGCAAGCACCCATGGATG
CTTACGACCGTTCAGCATTATGCGAAACGGCGCAGCAAGTTTGCCAAAGATCCTTATGCG
TGGATTAAAGTGGGAAAAGATGAGGAGTGCCCATCTTCACAGCCTAACAAAGGCAGTGTG
AAGAACAGAAATCAAAAGAAGCGCATGGCTCAGAAAGCTGCTTTTATCAAGGCAGAGGCT
CAGAAACGTATTGCACAATGCAAAGCAGCTGATGCCAAGAGACTAGAAGCGCGAAAAAAG
CGGTGGAAAGAGGGCGCAGCTCGGGCTCGAGCTTGGAAAGAAAAGAAGCTAGCAGAAGCA
AAGGAAGCTGAAGCTCAGCAAGCTCAAGAACTGGCTGCAGCCTGAAGCCTTTAAGTTGGC
TCTCTAAAGGAATGTTTTTCAGAAAATCATACATCTTTGTTGCTTTGATGATGGGTGCCC
GGACACCAAGGAATAGAAGACGTGGTTGATGGTCTGCCTATATTCTAGTGTCTGGATGAT
CACGTTAGAAGACGTGGGTGATGGTCTGCCTATATTCTAGTGTCTGGATGATCGCGTTAG
TACTCCTATAATTGTTTAGAAGGGTTATTAATCTTATCCAATGCCAGGGGGGTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q20970
Definition sp|Q20970|SYMC_CAEEL Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans
Align length 92
Score (bit) 33.5
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947261|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_F09, 5'
         (713 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q20970|SYMC_CAEEL Methionyl-tRNA synthetase, cytoplasmic OS=C...    33   1.2  
sp|Q5R9U7|BAP29_PONAB B-cell receptor-associated protein 29 OS=P...    32   4.5  
sp|Q9UHQ4|BAP29_HUMAN B-cell receptor-associated protein 29 OS=H...    32   4.5  
sp|O58495|IORA_PYRHO Indolepyruvate oxidoreductase subunit iorA ...    31   5.8  
sp|A6S9N4|PAN1_BOTFB Actin cytoskeleton-regulatory complex prote...    30   9.9  
sp|P62297|ASPM_SHEEP Abnormal spindle-like microcephaly-associat...    30   9.9  

>sp|Q20970|SYMC_CAEEL Methionyl-tRNA synthetase, cytoplasmic
           OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1
          Length = 917

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +1

Query: 70  PSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNR 249
           PSP+    DP              A+ ++KF     A     K  E P  Q  +   K++
Sbjct: 570 PSPLFQKLDPAQ-----------IAEFKAKFGGSQDAQSSAPKTAEKPKQQKKQAPTKDK 618

Query: 250 NQKKRMAQKAAFIKAE-AQKRIAQCKAADAKR 342
              K+MA  AAF++ E   K I+Q  A + K+
Sbjct: 619 KGDKKMASTAAFVELEQGAKVISQLIAQNLKK 650


>sp|Q5R9U7|BAP29_PONAB B-cell receptor-associated protein 29
           OS=Pongo abelii GN=BCAP29 PE=2 SV=1
          Length = 241

 Score = 31.6 bits (70), Expect = 4.5
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +1

Query: 43  WLATRGTQVPSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKV----GKDEEC 210
           WL  R  ++ + ++ L   +S    + T  ++  K   KF ++     ++    GKDEEC
Sbjct: 114 WLVLR--RLVTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKRILKSHGKDEEC 171

Query: 211 PSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 324
                NK  V+++ + K   +K +   ++AQ  + + K
Sbjct: 172 VLEAENKKLVEDQQKLKTELRKTSDALSKAQNDVMEMK 209


>sp|Q9UHQ4|BAP29_HUMAN B-cell receptor-associated protein 29 OS=Homo
           sapiens GN=BCAP29 PE=1 SV=2
          Length = 241

 Score = 31.6 bits (70), Expect = 4.5
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +1

Query: 43  WLATRGTQVPSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKV----GKDEEC 210
           WL  R  ++ + ++ L   +S    + T  ++  K   KF ++     ++    GKDEEC
Sbjct: 114 WLVLR--RLVTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKRILKSHGKDEEC 171

Query: 211 PSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 324
                NK  V+++ + K   +K +   ++AQ  + + K
Sbjct: 172 VLEAENKKLVEDQEKLKTELRKTSDALSKAQNDVMEMK 209


>sp|O58495|IORA_PYRHO Indolepyruvate oxidoreductase subunit iorA
           OS=Pyrococcus horikoshii GN=iorA PE=3 SV=1
          Length = 648

 Score = 31.2 bits (69), Expect = 5.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 106 KHPWMLTTVQHYAKRRSKFAKDPYAWIKVGKD 201
           KHPW+L T++   K R +F   P+ WI+  +D
Sbjct: 222 KHPWLLETIE---KFREEFNTSPFNWIEGPED 250


>sp|A6S9N4|PAN1_BOTFB Actin cytoskeleton-regulatory complex protein
            pan1 OS=Botryotinia fuckeliana (strain B05.10) GN=pan1
            PE=3 SV=1
          Length = 1444

 Score = 30.4 bits (67), Expect = 9.9
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 205  ECPSSQPNKGSVK---NRNQKKRMAQKAAFIKAEAQKRIAQCKAA 330
            E PSSQP+        + +Q K    +AA+IK +A+KR+A+  AA
Sbjct: 925  ETPSSQPSSTPTPAGGSYSQYKTPEDRAAYIKQQAEKRMAERLAA 969


>sp|P62297|ASPM_SHEEP Abnormal spindle-like microcephaly-associated
           protein homolog (Fragment) OS=Ovis aries GN=ASPM PE=2
           SV=1
          Length = 3374

 Score = 30.4 bits (67), Expect = 9.9
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +1

Query: 34  SIGWLATRGTQVPSPVSHLCDPVSKHPWMLTTVQHYAKRRSKFAKDPYAWIKVGKDEECP 213
           SI W   +G +V   V+ L + + KH  +L       K++ +       W  + K +   
Sbjct: 38  SITWTPLKGGRVRETVTFLVNDILKHQAILLGNAEEPKKKKR-----TLWDTINKKKVSA 92

Query: 214 SSQPNK--GSVKNRNQKKRMAQKAAFIKAEAQ 303
           SS+ NK   +++N N+   ++ KA  +++  Q
Sbjct: 93  SSRHNKKVSNIQNVNKTFNVSPKADKVRSPLQ 124
tr_hit_id A9RIG4
Definition tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 77
Score (bit) 68.2
E-value 5.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947261|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_F09, 5'
         (713 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella paten...    68   5e-10
tr|B6TLW1|B6TLW1_MAIZE Putative uncharacterized protein OS=Zea m...    66   3e-09
tr|Q75IM4|Q75IM4_ORYSJ Os05g0126200 protein OS=Oryza sativa subs...    65   4e-09
tr|A2XZX6|A2XZX6_ORYSI Putative uncharacterized protein OS=Oryza...    65   4e-09
tr|A9NXH5|A9NXH5_PICSI Putative uncharacterized protein OS=Picea...    58   5e-07
tr|A5AL27|A5AL27_VITVI Putative uncharacterized protein (Chromos...    57   2e-06
tr|Q9SD44|Q9SD44_ARATH Putative uncharacterized protein F24M12.5...    55   6e-06
tr|Q8LEP2|Q8LEP2_ARATH Putative uncharacterized protein OS=Arabi...    55   6e-06
tr|B4PLV9|B4PLV9_DROYA GE23392 OS=Drosophila yakuba GN=GE23392 P...    37   1.3  
tr|B3P594|B3P594_DROER GG11940 OS=Drosophila erecta GN=GG11940 P...    35   3.7  

>tr|A9RIG4|A9RIG4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_159272 PE=4 SV=1
          Length = 219

 Score = 68.2 bits (165), Expect = 5e-10
 Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
 Frame = +1

Query: 130 VQHYAKRRSKFAKDPYAWIKVGKD-EECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEA-- 300
           V+HYAKR  K+   PYA + V  + EE P S+PN+GSV+NRN +KRMAQ+A F K +A  
Sbjct: 78  VRHYAKRAKKWQGAPYAMLPVPPEGEEIPDSRPNQGSVRNRNHQKRMAQRAEFAKMQAHT 137

Query: 301 ---QKRIAQCKAADAKR 342
              QKRIA      A+R
Sbjct: 138 RREQKRIAITARDTARR 154


>tr|B6TLW1|B6TLW1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 187

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
 Frame = +1

Query: 4   RRLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPY 177
           RR    I  +S    A   +Q P   + L   +  ++ P       +  KR S   K PY
Sbjct: 36  RRFLDPIGLRSFSAAAATASQAPPMGATLFGGLMDTRFPKRRPGFANRRKRASLRPKGPY 95

Query: 178 AWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 330
            W+K   DE  P SQPN+GSV+ R +KKR+ Q+  FI AE +KR AQ  AA
Sbjct: 96  YWVKCKPDEPIPVSQPNQGSVRGRKEKKRIKQRKDFIMAEKKKRRAQYSAA 146


>tr|Q75IM4|Q75IM4_ORYSJ Os05g0126200 protein OS=Oryza sativa subsp.
           japonica GN=P0683F12.6 PE=2 SV=1
          Length = 192

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
 Frame = +1

Query: 7   RLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPYA 180
           RL   I  +     A   +Q PS  + L   +  ++ P      +   KR S   K PY 
Sbjct: 42  RLLDPIGLRPFSAAAATASQAPSMGAGLFSGLMDTRFPKRRPGFKSRRKRASLRPKGPYY 101

Query: 181 WIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 330
           W+K    E  P++QPN+GSV+ R +KKR+ Q+ AFI AE +KR AQ  AA
Sbjct: 102 WVKCKPGEPIPANQPNEGSVQGRKEKKRIKQRKAFIMAEKKKRKAQYSAA 151


>tr|A2XZX6|A2XZX6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18285 PE=4 SV=1
          Length = 192

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
 Frame = +1

Query: 7   RLFHAISHQSIGWLATRGTQVPSPVSHLCDPV--SKHPWMLTTVQHYAKRRSKFAKDPYA 180
           RL   I  +     A   +Q PS  + L   +  ++ P      +   KR S   K PY 
Sbjct: 42  RLLDPIGLRPFSAAAATASQAPSMGAGLFSGLMDTRFPKRRPGFKSRRKRASLRPKGPYY 101

Query: 181 WIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCKAA 330
           W+K    E  P++QPN+GSV+ R +KKR+ Q+ AFI AE +KR AQ  AA
Sbjct: 102 WVKCKPGEPIPANQPNEGSVQGRKEKKRIKQRKAFIMAEKKKRKAQYSAA 151


>tr|A9NXH5|A9NXH5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 216

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
 Frame = +1

Query: 145 KRRSKFA----KDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 312
           K+R+K A    K P+ WI+    E  P S+PN+GSV+ RN +KRM Q++AF   EAQKR 
Sbjct: 110 KKRNKRAYLRPKGPHYWIQYTPGEPIPHSRPNEGSVRGRNHRKRMEQRSAFRSGEAQKRK 169

Query: 313 AQCKAADAKR 342
            Q   A  ++
Sbjct: 170 DQLAGARRRK 179


>tr|A5AL27|A5AL27_VITVI Putative uncharacterized protein (Chromosome
           chr4 scaffold_83, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00036864001 PE=4 SV=1
          Length = 182

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/66 (43%), Positives = 40/66 (60%)
 Frame = +1

Query: 145 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 324
           KR S     PYAW++    E    ++PN+GSVK R +KKRM  + AFI +EA+KR  Q +
Sbjct: 80  KRASLRPPGPYAWVQYVPGERILPNRPNEGSVKGRKEKKRMRLRRAFILSEAKKRKTQLQ 139

Query: 325 AADAKR 342
            A  K+
Sbjct: 140 EAKRKK 145


>tr|Q9SD44|Q9SD44_ARATH Putative uncharacterized protein F24M12.50
           (At3g51010) OS=Arabidopsis thaliana GN=At3g51010 PE=2
           SV=1
          Length = 188

 Score = 54.7 bits (130), Expect = 6e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
 Frame = +1

Query: 136 HYAKRRSKFAKD-PYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 312
           H  ++RSK     PYA+++    +   S+ PN+GSVK RN KKR+ Q+ AFI +E +KR 
Sbjct: 81  HPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQ 140

Query: 313 AQCKAADAKR 342
           A  + A  K+
Sbjct: 141 ALVQEAKRKK 150


>tr|Q8LEP2|Q8LEP2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 188

 Score = 54.7 bits (130), Expect = 6e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
 Frame = +1

Query: 136 HYAKRRSKFAKD-PYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRI 312
           H  ++RSK     PYA+++    +   S+ PN+GSVK RN KKR+ Q+ AFI +E +KR 
Sbjct: 81  HPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQ 140

Query: 313 AQCKAADAKR 342
           A  + A  K+
Sbjct: 141 ALVQEAKRKK 150


>tr|B4PLV9|B4PLV9_DROYA GE23392 OS=Drosophila yakuba GN=GE23392 PE=4
           SV=1
          Length = 118

 Score = 37.0 bits (84), Expect = 1.3
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +1

Query: 145 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 324
           K   K A +   + K   +++    +PNK  ++N  +K++ AQ+AA  +    +R AQ K
Sbjct: 18  KGPGKVAHNQKPYFKSKNNQKAKGEKPNKPEIRNMKRKEKAAQEAAEREKVRAERDAQVK 77

Query: 325 AADAKRL 345
           A   KRL
Sbjct: 78  AYKKKRL 84


>tr|B3P594|B3P594_DROER GG11940 OS=Drosophila erecta GN=GG11940 PE=4
           SV=1
          Length = 118

 Score = 35.4 bits (80), Expect = 3.7
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 145 KRRSKFAKDPYAWIKVGKDEECPSSQPNKGSVKNRNQKKRMAQKAAFIKAEAQKRIAQCK 324
           K   K A +   + K    ++    +PNK  ++N  +K++ AQ+AA  +    +R AQ K
Sbjct: 18  KGPGKVAHNQKPYFKNKNKQKAKGDKPNKPEIRNLKRKEKAAQEAAQREKVRAERDAQVK 77

Query: 325 AADAKRL 345
           A   KRL
Sbjct: 78  AYKKKRL 84