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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947264
Clone id YMU02A01NGRL0015_F12
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_F12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAAAAAAGCTGAATCATCGTCACTAAACCTCAAAAAATAAATCTGGGAAAGAAAGTTGGA
ATAAATAAATCCCGGTTTGTCAAGATTATTGGACATCTATTTGGTTGAACGGGATCCCTC
GTTTCCACCACTCGGTGAAATATATTTCCCTAAGGGTTTTTTCCTGGAAAAAAAAAAAAA
TTAAGAACGAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A1VDD3
Definition sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Align length 49
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947264|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_F12, 5'
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Des...    32   1.8  
sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase OS=Des...    32   1.8  
sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS...    30   6.8  

>sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=dapL PE=3 SV=1
          Length = 388

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 165 NLVTHSFQELGKIVTKQNCFGTPRNTWFNFYFRGDK*RKKSMGRRLKKL 311
           + VT   QE G +VT  N FGTP   +F      D  R +    R+ KL
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNARLEEAVSRIAKL 388


>sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=dapL PE=3 SV=1
          Length = 388

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 165 NLVTHSFQELGKIVTKQNCFGTPRNTWFNFYFRGDK*RKKSMGRRLKKL 311
           + VT   QE G +VT  N FGTP   +F      D  R +    R+ KL
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNARLEEAVSRIAKL 388


>sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3
           OS=Dictyostelium discoideum GN=ddx3 PE=3 SV=1
          Length = 712

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -1

Query: 449 GNIFHRVVETRDPVQPNRCPIILTNRDL 366
           GNI H       PVQ +  PIIL NRDL
Sbjct: 260 GNIKHAKYTKPTPVQKSALPIILKNRDL 287
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947264|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_F12, 5'
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   1.9  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -1

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
           LK +++E+D ST +     ++++F A  +F+L VNL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283