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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947266
Clone id YMU02A01NGRL0015_F15
Library
Length 362
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_F15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTTGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAAGATAGCTGACTCATCGTCACTAAACCTCANAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947266|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_F15, 5'
         (333 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q229Q1
Definition tr|Q229Q1|Q229Q1_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 54
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947266|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_F15, 5'
         (333 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q229Q1|Q229Q1_TETTH Putative uncharacterized protein OS=Tetra...    36   1.1  
tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   1.9  

>tr|Q229Q1|Q229Q1_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_01347940 PE=4
            SV=1
          Length = 3271

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 87   N*KKKLYLCRKYVFSYYFSKIRGRLINLVTHSFQELGKIVTKQNCFGTPRNTWF 248
            N    LY C KY+FS YF ++  +     TH   E  +   K+NCF   +N W+
Sbjct: 1361 NPDSSLYKCIKYLFSRYFIQLDKK-----THLVSEYIRYFGKKNCFLHTQNDWY 1409


>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -2

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
           LK +++E+D ST +     ++++F A  +F+L VNL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283