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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947273
Clone id YMU02A01NGRL0015_F24
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_F24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGCAATGGCTTCTACGAGCATGGCCTGCTCACACCAGCTGGTGCCTGCGCTGTCAGTTCC
TTTACCCAAATCCAGATTTCTGGGCGCTCCCTCCTTCGCACCTGCCCTCGCCTGCAGCAA
TGGTTCTCGTCTCACCTGCATGGCCTCTAGCGAGTGGCTGCCTGGCCAACCCCGCCCTGC
CCATCTGGATGGCTCCTCCCCTGGCGACTTTGGGTTCGACCCCCTCGGGCTCGCTGAGGT
ACCCGAAAATTTCGCTCGCTTCAAGGAGTCTGAGCTCATTCACTGCAGATGGGCGATGCT
AGCTGTGCCAGGAATTCTGTTGCCAGAAGCTCTGGGGCTGGGTAACTGGGTGGATGCGCA
GAAATGGGCAGCTACGCCAGGCGGGCATGCCACCTATTTGGGCAATCCTGTACCCTGGGG
CAACCTGTCCTTCATTATTGCCTTCGAATTTTTTGCCATTGCTTTTTCAGAGGCTTTAAG
AAATGAGGAGAATGACCCTGAGAGAAGGAAGTATCCAGGTGGGCCATTTGACCCTCTTGG
TTTCTCCAAGGAT
■■Homology search results ■■ -
sp_hit_id Q9SDM1
Definition sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare
Align length 185
Score (bit) 227.0
E-value 3.0e-59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947273|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_F24, 5'
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl...   227   3e-59
sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop...   206   8e-53
sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloropla...    91   4e-18
sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor...    88   3e-17
sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chl...    86   1e-16
sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chl...    85   2e-16
sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloropl...    85   3e-16
sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplas...    84   6e-16
sp|P04784|CB21_WHEAT Chlorophyll a-b binding protein, chloroplas...    82   1e-15
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb...    82   2e-15
sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloropl...    81   4e-15
sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloropl...    80   5e-15
sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplas...    79   1e-14
sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chlorop...    79   1e-14
sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl...    79   2e-14
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop...    79   2e-14
sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chlorop...    78   3e-14
sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chlorop...    78   3e-14
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl...    78   3e-14
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop...    78   3e-14
sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chlorop...    78   3e-14
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop...    78   3e-14
sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloropl...    78   3e-14
sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chlorop...    78   3e-14
sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch...    78   3e-14
sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloropl...    78   3e-14
sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop...    77   4e-14
sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chlorop...    77   4e-14
sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloropl...    77   4e-14
sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro...    77   6e-14

>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21,
           chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
          Length = 245

 Score =  227 bits (579), Expect = 3e-59
 Identities = 116/185 (62%), Positives = 129/185 (69%), Gaps = 2/185 (1%)
 Frame = +2

Query: 5   MASTS--MACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRP 178
           MAS+S   +CS   VP+L  P  +S   G P  A A   +   R+T   S+EW PGQPRP
Sbjct: 1   MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYA---TTSGRVTM--SAEWFPGQPRP 55

Query: 179 AHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDA 358
           AHLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAML VPG+L+PEALGLGNWV A
Sbjct: 56  AHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKA 115

Query: 359 QKWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPL 538
           Q+WAA P G ATYLGNPVPWGNL                 R  E DPE++KYPGG FDPL
Sbjct: 116 QEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPL 175

Query: 539 GFSKD 553
           GFSKD
Sbjct: 176 GFSKD 180



 Score = 30.8 bits (68), Expect = 4.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 215 FDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEA 331
           FDPLG ++ P  F   K  E+ + R AMLA  G  + ++
Sbjct: 172 FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQS 210


>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A,
           chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1
          Length = 246

 Score =  206 bits (523), Expect = 8e-53
 Identities = 100/182 (54%), Positives = 120/182 (65%)
 Frame = +2

Query: 8   ASTSMACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPAHL 187
           ++T M+C    V    +   KS+F  A    P    +         S++W+PGQPRP++L
Sbjct: 3   SNTLMSCGIPAVCPSFLSSTKSKFAAA---MPVYVGATNFMSRFSMSADWMPGQPRPSYL 59

Query: 188 DGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQKW 367
           DGS+PGDFGFD LGL EVP N  R+KESELIHCRWAMLAVPGI++PEALGLGNWV AQ+W
Sbjct: 60  DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 119

Query: 368 AATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLGFS 547
           AA PGG ATYLG PVPWG L                 R+ E D E++KYPGG FDPLG+S
Sbjct: 120 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 179

Query: 548 KD 553
           KD
Sbjct: 180 KD 181



 Score = 33.5 bits (75), Expect = 0.71
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 215 FDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLG 343
           FDPLG ++ P  F   K  E+ + R A+LA+ G  + ++  LG
Sbjct: 173 FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLG 215


>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4,
           chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
          Length = 252

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 51/110 (46%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
 Frame = +2

Query: 68  KSRFLGAPS--------FAPALACSNGSRLTCMASSEWLPGQPRPAHLDGSSPGDFGFDP 223
           KSRFLG  S        F P     + S        EWLPG   P +L GS PGD GFDP
Sbjct: 19  KSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDP 78

Query: 224 LGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQKWAA 373
           LGLAE PEN   F ++EL++ RWAML V G+LLPE       ++  KW A
Sbjct: 79  LGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA 128


>sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1
          Length = 280

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 49/133 (36%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
 Frame = +2

Query: 176 PAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGL--GNW 349
           P +L+G   GD+G+DP GL + PENFA+++  ELIH RWAML   G ++PEAL     N 
Sbjct: 82  PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141

Query: 350 VDAQKWAAT-----PGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKY 514
                W  T      G    Y G  +P   +                      D E + +
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLH 201

Query: 515 PGGPFDPLGFSKD 553
           PGGPFDPLG +KD
Sbjct: 202 PGGPFDPLGLAKD 214



 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 215 FDPLGLAEVPENFARFKESELIHCRWAMLAVPGILL 322
           FDPLGLA+ PE  A  K  E+ + R AM A+ G  +
Sbjct: 206 FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI 241


>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20,
           chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20
           PE=1 SV=1
          Length = 231

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
 Frame = +2

Query: 101 PALACSNGSRLT-----CMASSEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFK 265
           P+ A S   R T       A   WLPG   PA+LDGS  GD GFDPL LAE PE+   F 
Sbjct: 13  PSPAASGSPRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFV 72

Query: 266 ESELIHCRWAMLAVPGILLPEALGLGNWVDAQKWAATPG 382
           ++++++ RWAML V G+L+PE L     ++A +W   PG
Sbjct: 73  QADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPG 111


>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=2
           SV=1
          Length = 276

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 61/176 (34%), Positives = 71/176 (40%), Gaps = 43/176 (24%)
 Frame = +2

Query: 155 WLPGQPRPAHLDGSSPGDFGFDPLGLAEVPE----------------------------- 247
           W PG   P  LDGS  GD GFDP GL +  E                             
Sbjct: 59  WFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESS 118

Query: 248 --------------NFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQKWAATPGG 385
                            RF+E ELIH RWAML   G +  EAL    W DA K     G 
Sbjct: 119 EIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG- 177

Query: 386 HATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLGFSKD 553
            ++YLG P+P+ +L                 RN E DPE+R YPGG FDPLG + D
Sbjct: 178 -SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAAD 231



 Score = 33.9 bits (76), Expect = 0.55
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +2

Query: 200 PGDFGFDPLGLAEVPENFARFKESELIHCRWAMLA 304
           PG + FDPLGLA  PE     K +E+ H R AM+A
Sbjct: 219 PGGY-FDPLGLAADPEKLDTLKLAEIKHSRLAMVA 252


>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
          Length = 270

 Score = 84.7 bits (208), Expect = 3e-16
 Identities = 49/135 (36%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
 Frame = +2

Query: 23  ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRL----------------TCMASSE 154
           AC+   + A++   P SR  G+       +   G RL                 C+A+  
Sbjct: 4   ACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADP 63

Query: 155 ----WLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILL 322
               W PG   P  LDGS PGDFGFDPLGLA  PE+    +++EL+HCRWAML   GI +
Sbjct: 64  DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 123

Query: 323 PEALGLGNWVDAQKW 367
           PE L     ++   W
Sbjct: 124 PELLTKIGILNTPSW 138


>sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplastic
           OS=Zea mays PE=2 SV=1
          Length = 265

 Score = 83.6 bits (205), Expect = 6e-16
 Identities = 70/210 (33%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
 Frame = +2

Query: 5   MASTSMACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEW--------- 157
           MAS++MA S       +V +P S F  A       A    ++    + S W         
Sbjct: 1   MASSTMALSSTAFAGKAVNVPSSSFGEARVTMRKTAAK--AKPAAASGSPWYGPDRVLYL 58

Query: 158 --LPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEA 331
             L G+P P++L G  PGD+G+D  GL+  PE FA+ +E E+IHCRWAML   G + PE 
Sbjct: 59  GPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117

Query: 332 L-------GLGNWVDAQKWAATPGGHATYLGNP---------VPWGNLXXXXXXXXXXXX 463
           L       G   W  A     + GG   YLGNP           W               
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 176

Query: 464 XXXXLRNEENDPERRKYPGGPFDPLGFSKD 553
               L  E  DP    YPGG FDPLG + D
Sbjct: 177 AGGPL-GEVVDP---LYPGGSFDPLGLADD 202



 Score = 37.4 bits (85), Expect = 0.049
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +2

Query: 77  FLGAPSF--APALACSNGSRLTCMASSEW--LPGQPRPAHLDGSSPGDFGFDPLGLAEVP 244
           +LG PS   A ++      ++  M + E   + G P    +D   PG   FDPLGLA+ P
Sbjct: 145 YLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG-SFDPLGLADDP 203

Query: 245 ENFARFKESELIHCRWAMLAVPGILL 322
           E F   K  EL   R AML++ G  +
Sbjct: 204 EAFGELKVKELKKGRLAMLSMFGFFV 229


>sp|P04784|CB21_WHEAT Chlorophyll a-b binding protein, chloroplastic
           OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1
          Length = 266

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 69/209 (33%), Positives = 93/209 (44%), Gaps = 27/209 (12%)
 Frame = +2

Query: 5   MASTSMACSHQLVPALSVP-LPKSRFLGAPSFAPALACSNGSRLTCMASSEW-------- 157
           MA+T+M+ S       +V  LP S  +G          +   +++  +SS W        
Sbjct: 1   MAATTMSLSSSSFAGKAVKNLPSSALIGDARVNMRKTAAKAKQVS--SSSPWYGSDRVLY 58

Query: 158 ---LPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPE 328
              L G+P P++L G  PGD+G+D  GL+  PE FA+ +E E+IHCRWAML   G + PE
Sbjct: 59  LGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117

Query: 329 AL-------GLGNWVDAQKWAATPGGHATYLGNP--VPWGNLXXXXXXXXXXXXXXXXLR 481
            L       G   W  A     + GG   YLGNP  V   +L                 R
Sbjct: 118 LLARNGVKFGEAGWFKAGSQIFSDGG-LDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYR 176

Query: 482 ------NEENDPERRKYPGGPFDPLGFSK 550
                  E  DP    YPGG FDPLG ++
Sbjct: 177 IAGGPLGEIVDP---LYPGGSFDPLGLAE 202



 Score = 38.9 bits (89), Expect = 0.017
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
 Frame = +2

Query: 77  FLGAPSF--APALACSNGSRLTCMASSEW--LPGQPRPAHLDGSSPGDFGFDPLGLAEVP 244
           +LG PS   A +L      ++  M + E   + G P    +D   PG   FDPLGLAE P
Sbjct: 146 YLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGG-SFDPLGLAERP 204

Query: 245 ENFARFKESELIHCRWAMLAVPGILLPEAL-GLGNWVDAQKWAATPGGHATYL 400
           + FA  K  E+ + R AM ++ G  +   + G G   D     A P  +  +L
Sbjct: 205 QAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWL 257


>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member
           1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1
          Length = 274

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 56/146 (38%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
 Frame = +2

Query: 164 GQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEAL--- 334
           G+P P++L G  PGD+G+D  GL+  PENFA+ +E E+IHCRWAML   G + PE L   
Sbjct: 72  GEP-PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARN 130

Query: 335 ----GLGNWVDAQKWAATPGGHATYLGNP---------VPWGNLXXXXXXXXXXXXXXXX 475
               G   W  A     + GG   YLGNP           W                   
Sbjct: 131 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 189

Query: 476 LRNEENDPERRKYPGGPFDPLGFSKD 553
           L  E  DP    YPGG FDPLG ++D
Sbjct: 190 L-GEVTDP---IYPGGSFDPLGLAED 211



 Score = 37.4 bits (85), Expect = 0.049
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +2

Query: 77  FLGAPSF--APALACSNGSRLTCMASSEW--LPGQPRPAHLDGSSPGDFGFDPLGLAEVP 244
           +LG PS   A ++      ++  M + E   + G P     D   PG   FDPLGLAE P
Sbjct: 154 YLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGG-SFDPLGLAEDP 212

Query: 245 ENFARFKESELIHCRWAMLAVPGILL 322
           E FA  K  E+ + R AM ++ G  +
Sbjct: 213 EAFAELKVKEIKNGRLAMFSMFGFFV 238
tr_hit_id A9T399
Definition tr|A9T399|A9T399_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 182
Score (bit) 234.0
E-value 3.0e-60
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947273|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_F24, 5'
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T399|A9T399_PHYPA Predicted protein OS=Physcomitrella paten...   234   3e-60
tr|A9NS16|A9NS16_PICSI Putative uncharacterized protein OS=Picea...   228   2e-58
tr|A9P266|A9P266_PICSI Putative uncharacterized protein OS=Picea...   227   3e-58
tr|A9NRY9|A9NRY9_PICSI Putative uncharacterized protein OS=Picea...   226   6e-58
tr|B6SSN3|B6SSN3_MAIZE Chlorophyll a-b binding protein 6A OS=Zea...   225   1e-57
tr|B4XGT7|B4XGT7_9POAL Chloroplast chlorophyll a/b binding prote...   225   1e-57
tr|Q9ZSU0|Q9ZSU0_ORYSA Chlorophyll a/b-binding protein OS=Oryza ...   224   2e-57
tr|Q5ZA98|Q5ZA98_ORYSJ Os06g0320500 protein OS=Oryza sativa subs...   224   2e-57
tr|A2YCB9|A2YCB9_ORYSI Putative uncharacterized protein OS=Oryza...   224   2e-57
tr|B4FZL4|B4FZL4_MAIZE Chlorophyll a-b binding protein 6A OS=Zea...   222   1e-56
tr|A9T3X6|A9T3X6_PHYPA Predicted protein OS=Physcomitrella paten...   220   3e-56
tr|B7FH03|B7FH03_MEDTR Putative uncharacterized protein OS=Medic...   218   2e-55
tr|Q02069|Q02069_PINSY Type 1 chlorophyll a /b-binding protein O...   214   2e-54
tr|A9TJX6|A9TJX6_PHYPA Predicted protein OS=Physcomitrella paten...   214   2e-54
tr|A5AE63|A5AE63_VITVI Putative uncharacterized protein OS=Vitis...   214   2e-54
tr|Q9C5R7|Q9C5R7_ARATH AT3g54890 OS=Arabidopsis thaliana GN=AT3g...   214   3e-54
tr|Q01667|Q01667_ARATH AT3g54890 (Chlorophyll A/B-binding protei...   213   5e-54
tr|A8MS75|A8MS75_ARATH Uncharacterized protein At3g54890.4 OS=Ar...   213   5e-54
tr|Q40512|Q40512_TOBAC Photosystem I light-harvesting chlorophyl...   213   7e-54
tr|A9PJ58|A9PJ58_POPJC Putative uncharacterized protein OS=Popul...   210   5e-53
tr|Q7DM40|Q7DM40_PINSY Type 1 chlorophyll a /b-binding protein (...   209   6e-53
tr|Q6V8T3|Q6V8T3_MALDO Chlorophyll a/b-binding protein type I (F...   183   6e-45
tr|Q14K86|Q14K86_PLAAC Chlorophyll a/b-binding protein, photosys...   182   8e-45
tr|Q9M539|Q9M539_9LAMI Chlorophyll a/b-binding protein type I (F...   181   3e-44
tr|Q3EAJ6|Q3EAJ6_ARATH Uncharacterized protein At3g54890.3 OS=Ar...   178   1e-43
tr|Q3E725|Q3E725_ARATH Uncharacterized protein At3g54890.2 OS=Ar...   178   1e-43
tr|A2SY12|A2SY12_MESVI Light-harvesting chlorophyll-a/b binding ...   152   2e-35
tr|Q9FVE3|Q9FVE3_CHLRE Chlorophyll A-B binding protein of LHCI O...   124   3e-27
tr|Q7DM26|Q7DM26_CHLRE Light harvesting complex protein I-20 OS=...   123   7e-27
tr|Q05093|Q05093_CHLRE Light harvesting complex I protein (Light...   123   7e-27

>tr|A9T399|A9T399_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_139567 PE=4 SV=1
          Length = 241

 Score =  234 bits (596), Expect = 3e-60
 Identities = 117/182 (64%), Positives = 132/182 (72%)
 Frame = +2

Query: 5   MASTSMACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPAH 184
           MA+ + A   ++V  ++     S F G+ S +  L CSNGSR+ CMA  EWLPG PRP++
Sbjct: 1   MATAAAAQVSRVVTGVATAQKSSFFAGSSSVS-LLGCSNGSRV-CMA--EWLPGNPRPSY 56

Query: 185 LDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQK 364
           LDGS+PGDFGFDPLGL EVPEN  RFKESELIH RWAMLAVPG+L+PEALG GNWV AQK
Sbjct: 57  LDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGYGNWVSAQK 116

Query: 365 WAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLGF 544
           WAATPGG ATYLGNPVPWGNL                 RN E DPE+RKYPGG FDPLGF
Sbjct: 117 WAATPGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQRNGEPDPEKRKYPGGAFDPLGF 176

Query: 545 SK 550
           SK
Sbjct: 177 SK 178


>tr|A9NS16|A9NS16_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  228 bits (580), Expect = 2e-58
 Identities = 112/184 (60%), Positives = 132/184 (71%), Gaps = 3/184 (1%)
 Frame = +2

Query: 11  STSMACSHQLVPAL---SVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 181
           +T++ CSH + P +   +    KSRF  +P+ + +L   NGSR++   S+EW+PGQPRP 
Sbjct: 2   ATAVGCSHVVAPVVFAGAFSSAKSRFF-SPTNSLSLGVCNGSRVSM--SAEWMPGQPRPP 58

Query: 182 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 361
           HLDGS+PGDFGFDPL L  VPEN  R+KESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ
Sbjct: 59  HLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQ 118

Query: 362 KWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLG 541
           KWAA PG  ATYLG PVPWG L                 RN E DPE+RKYPGG FDPLG
Sbjct: 119 KWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQRNGEPDPEKRKYPGGAFDPLG 178

Query: 542 FSKD 553
           FSKD
Sbjct: 179 FSKD 182



 Score = 33.9 bits (76), Expect = 6.0
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +2

Query: 53  SVPLPKSRFLGAP---SFAPALACSNGSRLTCMASSEWLPGQPRPAHLDGSSPGDFGFDP 223
           ++P  ++ +LGAP    + P +       +  + S     G+P P       PG   FDP
Sbjct: 122 AIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR--NGEPDPEKR--KYPGG-AFDP 176

Query: 224 LGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLG 343
           LG ++ P  F  +K  E+ + R A+LA  G  +  +   G
Sbjct: 177 LGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPG 216


>tr|A9P266|A9P266_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  227 bits (579), Expect = 3e-58
 Identities = 112/184 (60%), Positives = 131/184 (71%), Gaps = 3/184 (1%)
 Frame = +2

Query: 11  STSMACSHQLVPAL---SVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 181
           +T++ CSH + P +   +    KSRF  +P+ + +L   NGSR++   S EW+PGQPRP 
Sbjct: 2   ATAVGCSHVVAPVVFAGAFSSAKSRFF-SPTNSLSLGVCNGSRVSM--SDEWMPGQPRPP 58

Query: 182 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 361
           HLDGS+PGDFGFDPL L  VPEN  R+KESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ
Sbjct: 59  HLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQ 118

Query: 362 KWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLG 541
           KWAA PG  ATYLG PVPWG L                 RN E DPE+RKYPGG FDPLG
Sbjct: 119 KWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQRNGEPDPEKRKYPGGAFDPLG 178

Query: 542 FSKD 553
           FSKD
Sbjct: 179 FSKD 182



 Score = 33.9 bits (76), Expect = 6.0
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +2

Query: 53  SVPLPKSRFLGAP---SFAPALACSNGSRLTCMASSEWLPGQPRPAHLDGSSPGDFGFDP 223
           ++P  ++ +LGAP    + P +       +  + S     G+P P       PG   FDP
Sbjct: 122 AIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR--NGEPDPEKR--KYPGG-AFDP 176

Query: 224 LGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLG 343
           LG ++ P  F  +K  E+ + R A+LA  G  +  +   G
Sbjct: 177 LGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPG 216


>tr|A9NRY9|A9NRY9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  226 bits (576), Expect = 6e-58
 Identities = 113/184 (61%), Positives = 132/184 (71%), Gaps = 3/184 (1%)
 Frame = +2

Query: 11  STSMACSHQLVP---ALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 181
           +T++ C H + P   A +    KSRF  +P+ + +L   NGSR++   S+EW+PGQPRPA
Sbjct: 2   ATAVGCLHIVAPVAFAGTFSSAKSRFF-SPTNSLSLGVCNGSRVSM--SAEWMPGQPRPA 58

Query: 182 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 361
           HLDGS+PGDFGFDPLGL  VPEN  R+KESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ
Sbjct: 59  HLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQ 118

Query: 362 KWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLG 541
           KWAA PGG ATYLG PVPWG                   RN E D E+RKYPGG FDPLG
Sbjct: 119 KWAAIPGGQATYLGVPVPWGYFPIILSIFFLKMAFAESQRNGEPDLEKRKYPGGAFDPLG 178

Query: 542 FSKD 553
           FSKD
Sbjct: 179 FSKD 182


>tr|B6SSN3|B6SSN3_MAIZE Chlorophyll a-b binding protein 6A OS=Zea
           mays PE=2 SV=1
          Length = 245

 Score =  225 bits (573), Expect = 1e-57
 Identities = 118/185 (63%), Positives = 131/185 (70%), Gaps = 2/185 (1%)
 Frame = +2

Query: 5   MASTS--MACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRP 178
           MAS+S   +CS   VP+L  P  +S  L AP  A A   +   R+T   S+EW+PGQPRP
Sbjct: 3   MASSSGLRSCSAVGVPSLLAPSSRSGRL-APFCANA---TTSGRVTM--SAEWMPGQPRP 56

Query: 179 AHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDA 358
           AHLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPGIL+PEALGLGNWV A
Sbjct: 57  AHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVKA 116

Query: 359 QKWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPL 538
           Q+WAA PGG ATYLG PVPWG L                 R  E DPE++KYPGG FDPL
Sbjct: 117 QEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPL 176

Query: 539 GFSKD 553
           GFSKD
Sbjct: 177 GFSKD 181


>tr|B4XGT7|B4XGT7_9POAL Chloroplast chlorophyll a/b binding protein
           OS=Phyllostachys edulis GN=Lhca1 PE=2 SV=1
          Length = 246

 Score =  225 bits (573), Expect = 1e-57
 Identities = 115/186 (61%), Positives = 128/186 (68%), Gaps = 2/186 (1%)
 Frame = +2

Query: 2   AMASTS--MACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPR 175
           AMAS+S   +CS   VP+L  P  +S   G P  A A   +   R+T   S+EW PGQPR
Sbjct: 2   AMASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYA---TTSGRVTM--SAEWFPGQPR 56

Query: 176 PAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVD 355
           PAHLDGSSPGDFGFDPLGL  VPENF RFKESE+ HCRWAML VPG+L+PEALGLGNWV 
Sbjct: 57  PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 116

Query: 356 AQKWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDP 535
           AQ+WAA PGG ATY G PVPWGNL                 R  E DPE++KYPGG FDP
Sbjct: 117 AQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTMEKDPEKKKYPGGAFDP 176

Query: 536 LGFSKD 553
           LGFSKD
Sbjct: 177 LGFSKD 182


>tr|Q9ZSU0|Q9ZSU0_ORYSA Chlorophyll a/b-binding protein OS=Oryza
           sativa GN=Cab26 PE=2 SV=1
          Length = 241

 Score =  224 bits (571), Expect = 2e-57
 Identities = 112/184 (60%), Positives = 129/184 (70%), Gaps = 1/184 (0%)
 Frame = +2

Query: 5   MASTSM-ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 181
           MA++ + +CS   VP+L  P      L   ++A     +   R+T   S+EW+PGQPRPA
Sbjct: 1   MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYA-----TTSGRVTM--SAEWMPGQPRPA 53

Query: 182 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 361
           HLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPG+L+PEALGLGNWV AQ
Sbjct: 54  HLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQ 113

Query: 362 KWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLG 541
           +WAA PGG ATYLGNPVPWG L                 R  E DPE++KYPGG FDPLG
Sbjct: 114 EWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLG 173

Query: 542 FSKD 553
           FSKD
Sbjct: 174 FSKD 177


>tr|Q5ZA98|Q5ZA98_ORYSJ Os06g0320500 protein OS=Oryza sativa subsp.
           japonica GN=P0578B12.4 PE=2 SV=1
          Length = 241

 Score =  224 bits (571), Expect = 2e-57
 Identities = 112/184 (60%), Positives = 129/184 (70%), Gaps = 1/184 (0%)
 Frame = +2

Query: 5   MASTSM-ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 181
           MA++ + +CS   VP+L  P      L   ++A     +   R+T   S+EW+PGQPRPA
Sbjct: 1   MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYA-----TTSGRVTM--SAEWMPGQPRPA 53

Query: 182 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 361
           HLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPG+L+PEALGLGNWV AQ
Sbjct: 54  HLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQ 113

Query: 362 KWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLG 541
           +WAA PGG ATYLGNPVPWG L                 R  E DPE++KYPGG FDPLG
Sbjct: 114 EWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLG 173

Query: 542 FSKD 553
           FSKD
Sbjct: 174 FSKD 177


>tr|A2YCB9|A2YCB9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22755 PE=4 SV=1
          Length = 241

 Score =  224 bits (571), Expect = 2e-57
 Identities = 112/184 (60%), Positives = 129/184 (70%), Gaps = 1/184 (0%)
 Frame = +2

Query: 5   MASTSM-ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 181
           MA++ + +CS   VP+L  P      L   ++A     +   R+T   S+EW+PGQPRPA
Sbjct: 1   MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYA-----TTSGRVTM--SAEWMPGQPRPA 53

Query: 182 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 361
           HLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPG+L+PEALGLGNWV AQ
Sbjct: 54  HLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQ 113

Query: 362 KWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFDPLG 541
           +WAA PGG ATYLGNPVPWG L                 R  E DPE++KYPGG FDPLG
Sbjct: 114 EWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKKYPGGAFDPLG 173

Query: 542 FSKD 553
           FSKD
Sbjct: 174 FSKD 177


>tr|B4FZL4|B4FZL4_MAIZE Chlorophyll a-b binding protein 6A OS=Zea
           mays PE=2 SV=1
          Length = 249

 Score =  222 bits (565), Expect = 1e-56
 Identities = 115/187 (61%), Positives = 130/187 (69%), Gaps = 3/187 (1%)
 Frame = +2

Query: 2   AMASTSM---ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQP 172
           AMAS+S    +CS   VP+L  P   S          A A ++G R+T   S+EW+PGQP
Sbjct: 2   AMASSSSGLRSCSALGVPSLLAPSTSSSSRSGRLPFCAHATTSG-RVTM--SAEWMPGQP 58

Query: 173 RPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWV 352
           RPAHLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPG+L+PEALGLGNWV
Sbjct: 59  RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWV 118

Query: 353 DAQKWAATPGGHATYLGNPVPWGNLXXXXXXXXXXXXXXXXLRNEENDPERRKYPGGPFD 532
            AQ+WAA PGG ATYLG PVPWG L                 R  E DPE++KYPGG FD
Sbjct: 119 KAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQRTMEKDPEKKKYPGGAFD 178

Query: 533 PLGFSKD 553
           PLGFS+D
Sbjct: 179 PLGFSRD 185