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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947276
Clone id YMU02A01NGRL0015_G03
Library
Length 488
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_G03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GACACCACAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATAAGATGTCGTG
CTGCAATGGTAACTGTGGGTGCGGCGCAAACTGTCAATGCGCCAGCGGCTGCAAGGGGTG
CGGCCGAACTGACAGCCTTGTGCTGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGC
CTCCGTCTGCCCCAGCTATGAAGGGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTA
TCTTGGCTCTCCTACTTCTTGTTTCCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGG
GGTTGCCTTAATAACACCAAAAATAATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAA
TTAACATCCATGGATCGCTTGTACATAGTATGCTCACCTTTGTAATCTTGGAATTTGGTA
ATGATAATGATAATGGCTTAAGCCAAGCCATAAAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 32.7
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947276|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_G03, 5'
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    33   0.74 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    31   2.2  
sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol t...    31   2.8  
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    30   3.7  
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    30   3.7  
sp|Q07243|MTF1_MOUSE Metal regulatory transcription factor 1 OS=...    30   6.3  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = -2

Query: 279 AQLRGKQEVGEPRYPEMFSTPKPRAPS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 100
           A L G+++ G P +   +S+P P   + +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 99  H*QFAPHPQLPLQHD 55
               A HP L +  D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 279 AQLRGKQEVGEPRYPEMFSTPKPRAPS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 100
           A L G+++ G P +   +S+P P   + +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 99  H 97
           H
Sbjct: 201 H 201


>sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol
           transfer protein 2 OS=Homo sapiens GN=PITPNM2 PE=1 SV=1
          Length = 1349

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 215 NLEPLHSWGRRRQWH*EREAPPSTAQGCQFGRTPCSRWRIDSLRR 81
           N EPL   G ++QW    ++  S+ +G    R   S WR+ S+ R
Sbjct: 291 NGEPLVGRGLKKQWSTSSKSSRSSKRGASPSRHSISEWRMQSIAR 335


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -2

Query: 279 AQLRGKQEVGEPRYPEMFSTPKPRAPS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 100
           A L G+++ G   +   +S+P P   + +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 99  H*QFAPHPQLPLQHD 55
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -2

Query: 279 AQLRGKQEVGEPRYPEMFSTPKPRAPS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 100
           A L G+++ G   +   +S+P P   + +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 99  H*QFAPHPQLPLQHD 55
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q07243|MTF1_MOUSE Metal regulatory transcription factor 1 OS=Mus
           musculus GN=Mtf1 PE=2 SV=1
          Length = 675

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -2

Query: 288 LP*AQLRGKQEVGEPRYPEMFSTPKPRAPS*LGQTEAVALRTRGASFDSTRLSVRPHPLQ 109
           LP     G  E  +P  P    +  P APS    ++  A  +  A      + V PH  Q
Sbjct: 418 LPLVLQSGISEPPQPLLPATAPSAPPPAPSLGPGSQPAAFGSPPALLQPPEVPV-PHSTQ 476

Query: 108 PLA-H*QFAPHPQLPLQ 61
             A H +F PHPQ P Q
Sbjct: 477 FAANHQEFLPHPQAPPQ 493
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 23
Score (bit) 39.3
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947276|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_G03, 5'
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.100
tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas reinha...    34   4.2  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -2

Query: 120 HPLQPLAH*QFAPHPQLPLQHDI 52
           HP QPL H Q  PHPQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_194715 PE=4 SV=1
          Length = 547

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +1

Query: 73  LWVRRKLSMRQRLQGVRPN--------*QPCAVEGGASRSQCHCLRLPQL*RGSRFRSGE 228
           L +RR L ++ RLQG +PN         QP  +   AS    H L  P      R RSG+
Sbjct: 44  LELRRALELQCRLQGPQPNATGPVLQPRQPLPLPPAASPQLLHDLGTPPTQSSGRLRSGQ 103

Query: 229 HLWVSW 246
             W  W
Sbjct: 104 LTWRYW 109