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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947296
Clone id YMU02A01NGRL0015_H07
Library
Length 347
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_H07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAATTCGGTGATGAAGAAATGAACGATAATGCTGATAATGCAAACAAAGAAAAAAACGAC
CAAGAGCTGAAGCTTCAATCGCTTGAATCAATGGGGTTTATGGATCGTGAGCTGAATGCT
GTTCTCTTGAGCAAGAATGACGGGAATGTGCAACTTGTTCTGGACGATCTTTTAGTTGCA
GCTGGATGGGATGGGGCGTTTGAGGATCTCCGAGAGATGGGATTCACTGATCAGGCGGCA
AATGTGAGATTGCTTTTGAAACACGAAGGGGAGTGTCAGAGCTGCTGTGAGAGATTTGGT
GCAGAAGGGGAAGCAGAAAGCTTAAGTTGCAAAGGCTTGCGATGTAT
■■Homology search results ■■ -
sp_hit_id Q03413
Definition sp|Q03413|MEF2D_XENLA Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis
Align length 74
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947296|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_H07, 5'
         (347 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03413|MEF2D_XENLA Myocyte-specific enhancer factor 2D homolo...    31   2.2  
sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=M...    29   8.3  

>sp|Q03413|MEF2D_XENLA Myocyte-specific enhancer factor 2D homolog
           OS=Xenopus laevis GN=mef2d PE=1 SV=1
          Length = 498

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = -1

Query: 347 IHRKPLQLKLSASPSAPNLSQQL*HSPSCFKSNLTFAA*SVNPISRRSSNAPSHPAATKR 168
           ++  P+ + +   P++PN  +      SCF       A   +P+   SSNA S     + 
Sbjct: 403 VNTNPINISIKREPASPNRERSTGTPLSCFSHQSRHEATGRSPVDSLSSNASSFEGNDRE 462

Query: 167 SSRTSCTFPSFLLK 126
             R   T    LL+
Sbjct: 463 DPRGDYTSSLGLLR 476


>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus
            musculus GN=Rev3l PE=2 SV=2
          Length = 3122

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 178  QLKDRPEQVAHSRHSCSREQHSAHDP*TPLIQA 80
            Q  D+ E ++H R SCS E+H   D  +P I+A
Sbjct: 1686 QAIDKSELLSHDRQSCSEEKHHVSDS-SPWIRA 1717
tr_hit_id A9SHX9
Definition tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 66
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947296|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_H07, 5'
         (347 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g2469...    41   0.034
tr|Q56Z87|Q56Z87_ARATH Putative uncharacterized protein At4g2469...    41   0.034
tr|A9PHP5|A9PHP5_POPTR Putative uncharacterized protein OS=Popul...    40   0.044
tr|A9S1V7|A9S1V7_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.058
tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum ...    39   0.17 
tr|Q70KT8|Q70KT8_ORYSJ TA4 protein (Fragment) OS=Oryza sativa su...    37   0.49 
tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subs...    37   0.49 
tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.49 
tr|Q8H2A7|Q8H2A7_ANACO PFE18 protein (Fragment) OS=Ananas comosu...    37   0.64 
tr|A0JP99|A0JP99_XENTR LOC100036644 protein OS=Xenopus tropicali...    33   5.4  
tr|Q4UIY1|Q4UIY1_THEAN Ubiquitin-related chaperonin, putative OS...    33   5.4  
tr|Q4N6N3|Q4N6N3_THEPA Putative uncharacterized protein OS=Theil...    33   5.4  

>tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_212537 PE=4 SV=1
          Length = 732

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 25/66 (37%), Positives = 33/66 (50%)
 Frame = +1

Query: 73  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAANVRL 252
           L++L+SMGF  R+ N +LL KN                     E+L EMGF D   N +L
Sbjct: 645 LETLDSMGFKQRDFNQMLLKKNEYDLQRTLDDLVMAAERESLLEELEEMGFYDTNLNRQL 704

Query: 253 LLKHEG 270
           +LKH G
Sbjct: 705 MLKHNG 710


>tr|Q9SB64|Q9SB64_ARATH Putative uncharacterized protein AT4g24690
           OS=Arabidopsis thaliana GN=F22K18.110 PE=2 SV=1
          Length = 704

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = +1

Query: 73  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAANVRL 252
           L+ LE MGF + +LN  +L  N                     E+L+EMGF D   N RL
Sbjct: 623 LKELEEMGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRL 682

Query: 253 LLKHEG 270
           L K+ G
Sbjct: 683 LKKNNG 688


>tr|Q56Z87|Q56Z87_ARATH Putative uncharacterized protein At4g24690
           OS=Arabidopsis thaliana GN=At4g24690 PE=4 SV=1
          Length = 83

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = +1

Query: 73  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAANVRL 252
           L+ LE MGF + +LN  +L  N                     E+L+EMGF D   N RL
Sbjct: 2   LKELEEMGFKEIDLNKEILRDNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRL 61

Query: 253 LLKHEG 270
           L K+ G
Sbjct: 62  LKKNNG 67


>tr|A9PHP5|A9PHP5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 324

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +1

Query: 73  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAANVRL 252
           L+ LE MGF   +LN  +L +N                     E+L+EMGF+D+  N +L
Sbjct: 244 LKDLEEMGFKQVDLNKEILRRNEYDLEQSVDDLCGFAEWDPILEELQEMGFSDKEMNKKL 303

Query: 253 LLKHEG 270
           L K+ G
Sbjct: 304 LKKNNG 309


>tr|A9S1V7|A9S1V7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122833 PE=4 SV=1
          Length = 89

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = +1

Query: 73  LQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAANVRL 252
           L +LESMGF  R++N  +L KN                     E+L EMGF D   N  L
Sbjct: 2   LATLESMGFKQRDVNQEVLKKNGNDLQRTLDDLVMAVEWDPMLEELEEMGFYDTDMNRLL 61

Query: 253 LLKHEG 270
           + K+ G
Sbjct: 62  MFKNNG 67


>tr|B8K1X5|B8K1X5_WHEAT Ubiquitin-associated protein OS=Triticum
           aestivum GN=UBA PE=2 SV=1
          Length = 870

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/70 (32%), Positives = 30/70 (42%)
 Frame = +1

Query: 61  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAA 240
           +E  LQ LE MGF   +LN  +L +N                      +L EMGF D+  
Sbjct: 784 EEKLLQELEEMGFKQVDLNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELNEMGFDDRET 843

Query: 241 NVRLLLKHEG 270
           N  LL K+ G
Sbjct: 844 NKELLAKNGG 853


>tr|Q70KT8|Q70KT8_ORYSJ TA4 protein (Fragment) OS=Oryza sativa
           subsp. japonica GN=ta4 PE=2 SV=1
          Length = 208

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +1

Query: 61  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAA 240
           +E  L+ LE MGF   +LN  +L +N                     E+L+EMGF D   
Sbjct: 122 EEKLLKELEEMGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEI 181

Query: 241 NVRLLLKHEG 270
           N  +L K+ G
Sbjct: 182 NKEMLEKNGG 191


>tr|Q6ZH84|Q6ZH84_ORYSJ Os02g0593700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1067_B01.6-1 PE=2 SV=1
          Length = 845

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +1

Query: 61  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAA 240
           +E  L+ LE MGF   +LN  +L +N                     E+L+EMGF D   
Sbjct: 759 EEKLLKELEEMGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEI 818

Query: 241 NVRLLLKHEG 270
           N  +L K+ G
Sbjct: 819 NKEMLEKNGG 828


>tr|A2X6P6|A2X6P6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07886 PE=4 SV=1
          Length = 845

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +1

Query: 61  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAA 240
           +E  L+ LE MGF   +LN  +L +N                     E+L+EMGF D   
Sbjct: 759 EEKLLKELEEMGFRQVDLNKEILRQNKYNLEQSVDDLCGVSEWDPLLEELQEMGFEDTEI 818

Query: 241 NVRLLLKHEG 270
           N  +L K+ G
Sbjct: 819 NKEMLEKNGG 828


>tr|Q8H2A7|Q8H2A7_ANACO PFE18 protein (Fragment) OS=Ananas comosus
           PE=2 SV=1
          Length = 309

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +1

Query: 61  QELKLQSLESMGFMDRELNAVLLSKNXXXXXXXXXXXXXXXXXXXXFEDLREMGFTDQAA 240
           +E+ L+ LE MGF   +LN  +L +N                      +L EMGF D+  
Sbjct: 223 EEVMLKELEEMGFKQIDLNKEVLRQNKYDLDQSVGDLCGFSEWDPLLIELEEMGFADKER 282

Query: 241 NVRLLLKHEG 270
           N ++L K+ G
Sbjct: 283 NKKMLEKNGG 292