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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947330
Clone id YMU02A01NGRL0015_I21
Library
Length 266
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_I21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TACACTCCTGATTACTCTAAGTTGGAGAGGTTACAGCTTGCAGAGATCAAGCATGCTCGC
CTTGCCATGGTGGCTATGCTCATCTTCTACTTTGAGGCTGGTCAGGGCAAAACCTCTCTT
GGTGCCCTTTTATCATAAATGTAATGCAATGTGACCAATCGGTATGGATGAAGGGTTCTC
CAATCATCCATTTCTGTTTATACAGTTTTTTGTAGCCTGGTTGTGTTTTTTATTTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P36494
Definition sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea
Align length 43
Score (bit) 75.5
E-value 8.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947330|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_I21, 5'
         (222 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloro...    75   8e-14
sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B, c...    74   2e-13
sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, c...    74   2e-13
sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chl...    41   0.002
sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chl...    37   0.023
sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chl...    35   0.15 
sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29 OS=Chl...    33   0.57 
sp|P48747|CO9_RABIT Complement component C9 OS=Oryctolagus cunic...    30   2.8  
sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloropl...    30   3.7  
sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl...    30   3.7  
sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop...    30   4.8  
sp|P87149|MRS2_SCHPO Mitochondrial inner membrane magnesium tran...    30   4.8  
sp|Q40300|FCPF_MACPY Fucoxanthin-chlorophyll a-c binding protein...    29   6.3  
sp|Q40298|FCPD_MACPY Fucoxanthin-chlorophyll a-c binding protein...    29   6.3  
sp|Q40296|FCPB_MACPY Fucoxanthin-chlorophyll a-c binding protein...    29   6.3  
sp|Q40301|FCPE_MACPY Fucoxanthin-chlorophyll a-c binding protein...    29   8.2  
sp|Q08587|FCPD_PHATR Fucoxanthin-chlorophyll a-c binding protein...    29   8.2  
sp|Q08586|FCPC_PHATR Fucoxanthin-chlorophyll a-c binding protein...    29   8.2  
sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplas...    29   8.2  

>sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24,
           chloroplastic OS=Spinacia oleracea PE=2 SV=1
          Length = 261

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 37/43 (86%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL+LAEIKHARLAM+AMLIFYFEAGQGKT LGAL
Sbjct: 217 YNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 259


>sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B,
           chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3
           SV=1
          Length = 256

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL+LAEIKH+RLAM+AMLIFYFEAGQGKT LGAL
Sbjct: 212 YVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTPLGAL 254


>sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A,
           chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3
           SV=1
          Length = 256

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL++AEIKHARLAM+AMLIFYFEAGQGKT LGAL
Sbjct: 212 YVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 254


>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=2
           SV=1
          Length = 276

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
 Frame = +1

Query: 10  DYSKLERLQLAEIKHARLAMVAMLIFYFEA---GQGKTS 117
           D  KL+ L+LAEIKH+RLAMVA LIF  +A   G+G  S
Sbjct: 231 DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVS 269


>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=2
           SV=1
          Length = 290

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 20/30 (66%), Positives = 22/30 (73%)
 Frame = +1

Query: 10  DYSKLERLQLAEIKHARLAMVAMLIFYFEA 99
           D  K  +LQLAEIKHARLAMVA L F  +A
Sbjct: 231 DPEKTAQLQLAEIKHARLAMVAFLGFAVQA 260


>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1
           SV=1
          Length = 287

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +1

Query: 10  DYSKLERLQLAEIKHARLAMVAMLIFYFEA 99
           D  K  +LQLAEIKHARLAMV  L F  +A
Sbjct: 228 DPVKKAQLQLAEIKHARLAMVGFLGFAVQA 257


>sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29
           OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3
          Length = 280

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 10  DYSKLERLQLAEIKHARLAMVAMLIFYFEA-GQGKTSLGAL 129
           D  +  RL+ AEIKHARLAMV+   +  +A   G+ +LG+L
Sbjct: 227 DEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267


>sp|P48747|CO9_RABIT Complement component C9 OS=Oryctolagus
           cuniculus GN=C9 PE=1 SV=1
          Length = 557

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 54  CSPCHGGYAHLLL*GWSGQNLSWCPFIINVMQCDQS 161
           CSPC  G   LL+    GQ L  CPF+   + C+ S
Sbjct: 520 CSPCQNGGTALLM---DGQCLCTCPFMFEGIACEIS 552


>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8,
           chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1
          Length = 273

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +1

Query: 10  DYSKLERLQLAEIKHARLAMVAMLIFYFEA 99
           D   ++ L+L EIK+ RLAM+A+L ++ +A
Sbjct: 214 DEKSMKELKLKEIKNGRLAMLAILGYFIQA 243


>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21,
           chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
          Length = 245

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIF 87
           ++ D +K E L+L EIK+ RLAM+A + F
Sbjct: 177 FSKDPAKFEELKLKEIKNGRLAMLAFVGF 205
tr_hit_id A9RU32
Definition tr|A9RU32|A9RU32_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 43
Score (bit) 78.6
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947330|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_I21, 5'
         (222 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RU32|A9RU32_PHYPA Predicted protein OS=Physcomitrella paten...    79   1e-13
tr|Q9XF90|Q9XF90_ARATH Lhcb6 protein OS=Arabidopsis thaliana GN=...    77   4e-13
tr|Q9LMQ2|Q9LMQ2_ARATH F7H2.16 protein (Chlorophyll A-B binding ...    77   4e-13
tr|A9PK00|A9PK00_POPJC Putative uncharacterized protein OS=Popul...    76   1e-12
tr|A9PGD4|A9PGD4_POPTR Putative uncharacterized protein OS=Popul...    76   1e-12
tr|A9PFP4|A9PFP4_POPTR Putative uncharacterized protein OS=Popul...    75   1e-12
tr|Q41957|Q41957_ARATH Chlorophyll a-b-binding protein (Tomato) ...    75   2e-12
tr|B4FXB0|B4FXB0_MAIZE Chlorophyll a-b binding protein CP24 OS=Z...    75   2e-12
tr|A5ASW8|A5ASW8_VITVI Putative uncharacterized protein (Chromos...    75   2e-12
tr|Q9XQB6|Q9XQB6_PHAAU Chlorophyll a/b-binding protein CP24 OS=P...    74   3e-12
tr|Q7XV11|Q7XV11_ORYSJ Os04g0457000 protein OS=Oryza sativa subs...    74   4e-12
tr|Q6DV17|Q6DV17_BRARP Lhcb6 protein (Fragment) OS=Brassica rapa...    74   4e-12
tr|Q0PWS6|Q0PWS6_TOBAC Chloroplast pigment-binding protein CP24 ...    74   4e-12
tr|Q01JQ3|Q01JQ3_ORYSA H0523F07.10 protein OS=Oryza sativa GN=H0...    74   4e-12
tr|B8PYF9|B8PYF9_9POAL Chloroplast a/b binding protein cab-PhE11...    74   4e-12
tr|A3AUG3|A3AUG3_ORYSJ Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|A2XU61|A2XU61_ORYSI Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|Q41748|Q41748_MAIZE Chlorophyll a/b-binding apoprotein CP24 O...    73   8e-12
tr|B6TRW9|B6TRW9_MAIZE Putative uncharacterized protein OS=Zea m...    73   8e-12
tr|B6T037|B6T037_MAIZE Chlorophyll a-b binding protein CP24 OS=Z...    73   8e-12
tr|B4F9J6|B4F9J6_MAIZE Putative uncharacterized protein OS=Zea m...    73   8e-12
tr|Q5BMR6|Q5BMR6_FRAAN Chloroplast chlorophyll a/b-binding prote...    45   0.002
tr|A9PK34|A9PK34_POPJC Putative uncharacterized protein OS=Popul...    44   0.003
tr|A9NKX0|A9NKX0_PICSI Putative uncharacterized protein OS=Picea...    42   0.020
tr|A9NYR8|A9NYR8_PICSI Putative uncharacterized protein OS=Picea...    41   0.026
tr|Q6Z411|Q6Z411_ORYSJ Os07g0558400 protein OS=Oryza sativa subs...    41   0.034
tr|O65217|O65217_ORYSA Chlorophyll a/b-binding protein OS=Oryza ...    41   0.034
tr|O24561|O24561_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.034
tr|B4FJG1|B4FJG1_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.034
tr|A9P071|A9P071_PICSI Putative uncharacterized protein OS=Picea...    41   0.034

>tr|A9RU32|A9RU32_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_119427 PE=4 SV=1
          Length = 219

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 39/43 (90%), Positives = 40/43 (93%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD+SKLERLQLAEIKHARLAMVAMLIFYFEAGQG T LGAL
Sbjct: 175 YVPDFSKLERLQLAEIKHARLAMVAMLIFYFEAGQGFTPLGAL 217


>tr|Q9XF90|Q9XF90_ARATH Lhcb6 protein OS=Arabidopsis thaliana
           GN=Lhcb6 PE=2 SV=1
          Length = 258

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 37/43 (86%), Positives = 40/43 (93%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD+ KLERL+LAEIKH+RLAMVAMLIFYFEAGQGKT LGAL
Sbjct: 214 YEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGAL 256


>tr|Q9LMQ2|Q9LMQ2_ARATH F7H2.16 protein (Chlorophyll A-B binding
           protein) (Lhcb6 protein) (Putative chlorophyll binding
           protein) OS=Arabidopsis thaliana GN=At1g15820/F7H2.16
           PE=2 SV=1
          Length = 258

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 37/43 (86%), Positives = 40/43 (93%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD+ KLERL+LAEIKH+RLAMVAMLIFYFEAGQGKT LGAL
Sbjct: 214 YEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGAL 256


>tr|A9PK00|A9PK00_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 257

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 37/43 (86%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL+LAEIKHARLAM+AMLIFYFEAGQGKT LGAL
Sbjct: 213 YIPDEEKLERLKLAEIKHARLAMIAMLIFYFEAGQGKTPLGAL 255


>tr|A9PGD4|A9PGD4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 257

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 37/43 (86%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL+LAEIKHARLAM+AMLIFYFEAGQGKT LGAL
Sbjct: 213 YIPDEEKLERLKLAEIKHARLAMIAMLIFYFEAGQGKTPLGAL 255


>tr|A9PFP4|A9PFP4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 257

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 37/43 (86%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL++AEIKHARLAMVAMLIFYFEAGQGKT LGAL
Sbjct: 213 YIPDVEKLERLKVAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 255


>tr|Q41957|Q41957_ARATH Chlorophyll a-b-binding protein (Tomato)
           (Fragment) OS=Arabidopsis thaliana PE=2 SV=1
          Length = 85

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD+ KLERL+LAEIKH+RLAMVAML FYFEAGQGKT LGAL
Sbjct: 41  YEPDFEKLERLKLAEIKHSRLAMVAMLXFYFEAGQGKTPLGAL 83


>tr|B4FXB0|B4FXB0_MAIZE Chlorophyll a-b binding protein CP24 OS=Zea
           mays PE=2 SV=1
          Length = 253

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 35/43 (81%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL+LAEIKHAR+AM+AML+FYFEAGQGKT LGAL
Sbjct: 209 YVPDVEKLERLKLAEIKHARIAMLAMLVFYFEAGQGKTPLGAL 251


>tr|A5ASW8|A5ASW8_VITVI Putative uncharacterized protein (Chromosome
           chr12 scaffold_238, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00009554001 PE=4 SV=1
          Length = 257

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL+LAEIKHAR+AM+AMLIFYFEAGQGKT LGAL
Sbjct: 213 YIPDVEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 255


>tr|Q9XQB6|Q9XQB6_PHAAU Chlorophyll a/b-binding protein CP24
           OS=Phaseolus aureus GN=CipCp24 PE=2 SV=2
          Length = 258

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +1

Query: 1   YTPDYSKLERLQLAEIKHARLAMVAMLIFYFEAGQGKTSLGAL 129
           Y PD  KLERL+LAEIKHAR+AM+AMLIFYFEAGQGKT LGAL
Sbjct: 214 YIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGAL 256