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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947365
Clone id YMU02A01NGRL0015_K14
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_K14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACGCCTCTCTCGGTTGTAATGAAAAGAGAACGAAGATAAGGAGAACGACACCTACCTGCA
CTTTCAGTTCACCATGGCGAGCGTAGCCGTGGCCACTATACCTCCCTCGTGTTCGGCTCA
TCGCTCCCCGTCCGTATCGCCCAGCCCTTCGTCTGTCCTGCGCCAAGCTTCGCTGCAACC
CTTATGCTCAAAGGCTAAGATGGACGCTTTGAGGGAAGCTACTATGCCTTCATGCTTGTC
ATCTGGACTCGTAGCTGTGCTGTCACGAAAGGAGTGCAACTTGATCGTTACCCATGCGGT
TGCAGAAGCATTGAGGGAAGAATCTTCTGGAAAAGCAGAAGAGGGTGCTCCTGTGAATGA
GTTGTCCAAGTTACAGCTTGAGTCTGACCTTTTGAAAAAGAAGGCAAAACGTGCAGAGTT
GCGAAGAAAGAGGCTTGTAAGGAAACGTCACTTACGGAAGAAGGGTAGGTGGCCTCCTTC
AAAGATGGCAAAGCTAAAGAATGTTTGACTATTCATCTGGCTGCTCAATGGACTGTAACA
TCATTACACTTAAAAACAAAGTGAGATACTCACTG
■■Homology search results ■■ -
sp_hit_id P55101
Definition sp|P55101|INHA_HORSE Inhibin alpha chain OS=Equus caballus
Align length 73
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947365|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_K14, 5'
         (575 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55101|INHA_HORSE Inhibin alpha chain OS=Equus caballus GN=IN...    32   1.7  
sp|Q86V24|ADR2_HUMAN Adiponectin receptor protein 2 OS=Homo sapi...    32   1.7  
sp|Q5GWE6|RRMT_XANOR Putative RNA 2'-O-ribose methyltransferase ...    32   2.3  
sp|Q2NZK8|RRMT_XANOM Putative RNA 2'-O-ribose methyltransferase ...    32   2.3  
sp|Q8PCB8|RRMT_XANCP Putative RNA 2'-O-ribose methyltransferase ...    32   2.3  
sp|Q4UR65|RRMT_XANC8 Putative RNA 2'-O-ribose methyltransferase ...    32   2.3  
sp|Q3BX58|RRMT_XANC5 Putative RNA 2'-O-ribose methyltransferase ...    32   2.3  
sp|Q8PNZ9|RRMT_XANAC Putative RNA 2'-O-ribose methyltransferase ...    32   2.3  
sp|O84418|PMPB_CHLTR Probable outer membrane protein pmpB OS=Chl...    32   3.0  
sp|P04087|INHA_PIG Inhibin alpha chain OS=Sus scrofa GN=INHA PE=...    31   5.1  
sp|Q04997|INHA_MOUSE Inhibin alpha chain OS=Mus musculus GN=Inha...    31   5.1  
sp|A6H0U4|PURA_FLAPJ Adenylosuccinate synthetase OS=Flavobacteri...    30   8.6  

>sp|P55101|INHA_HORSE Inhibin alpha chain OS=Equus caballus GN=INHA
           PE=2 SV=1
          Length = 367

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
 Frame = +3

Query: 33  KIRRTTPTCTFSSPWRA*PWPLYLPRVRLIAPRPYRPALRLSCAKLRCNPYAQRL---RW 203
           + RR+TP           PWP     +RL+   P  PA   +C +   N   Q L   RW
Sbjct: 230 RTRRSTPPL---------PWPWSPAALRLLQRPPEEPAAHANCHRAALNISFQELGWDRW 280

Query: 204 TL*GKLLCLHACH 242
            +  +    H CH
Sbjct: 281 IVHPRSFIFHYCH 293


>sp|Q86V24|ADR2_HUMAN Adiponectin receptor protein 2 OS=Homo sapiens
           GN=ADIPOR2 PE=1 SV=1
          Length = 386

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -3

Query: 330 PEDSSLNASATAWVTIKLHSFR--DSTATSPDDKHEG-IVASLKASILAFEHKGCSEAWR 160
           P ++ L  S T    I+L      D T    +D H+G +   L+AS+L+  HK  SE   
Sbjct: 4   PTENRLGCSRTPEPDIRLRKGHQLDGTRRGDNDSHQGDLEPILEASVLSSHHKKSSEEHE 63

Query: 159 RTDEGLGDTDG 127
            +DE   + +G
Sbjct: 64  YSDEAPQEDEG 74


>sp|Q5GWE6|RRMT_XANOR Putative RNA 2'-O-ribose methyltransferase
           XOO3721 OS=Xanthomonas oryzae pv. oryzae GN=XOO3721 PE=3
           SV=2
          Length = 347

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 87  PWPLYLPRVRLIAPRPYRPALRLSCAKL 170
           PWPL +PR++L+   P R AL+L  A L
Sbjct: 166 PWPLGIPRLKLLPEAPSRSALKLDEALL 193


>sp|Q2NZK8|RRMT_XANOM Putative RNA 2'-O-ribose methyltransferase
           XOO3514 OS=Xanthomonas oryzae pv. oryzae (strain MAFF
           311018) GN=XOO3514 PE=3 SV=1
          Length = 347

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 87  PWPLYLPRVRLIAPRPYRPALRLSCAKL 170
           PWPL +PR++L+   P R AL+L  A L
Sbjct: 166 PWPLGIPRLKLLPEAPSRSALKLDEALL 193


>sp|Q8PCB8|RRMT_XANCP Putative RNA 2'-O-ribose methyltransferase
           XCC0816 OS=Xanthomonas campestris pv. campestris
           GN=XCC0816 PE=3 SV=1
          Length = 347

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 87  PWPLYLPRVRLIAPRPYRPALRLSCAKL 170
           PWPL +PR++L+   P R AL+L  A L
Sbjct: 166 PWPLGIPRLKLLPEAPSRSALKLDEALL 193


>sp|Q4UR65|RRMT_XANC8 Putative RNA 2'-O-ribose methyltransferase
           XC_3414 OS=Xanthomonas campestris pv. campestris (strain
           8004) GN=XC_3414 PE=3 SV=1
          Length = 347

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 87  PWPLYLPRVRLIAPRPYRPALRLSCAKL 170
           PWPL +PR++L+   P R AL+L  A L
Sbjct: 166 PWPLGIPRLKLLPEAPSRSALKLDEALL 193


>sp|Q3BX58|RRMT_XANC5 Putative RNA 2'-O-ribose methyltransferase
           XCV0924 OS=Xanthomonas campestris pv. vesicatoria
           (strain 85-10) GN=XCV0924 PE=3 SV=1
          Length = 347

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 87  PWPLYLPRVRLIAPRPYRPALRLSCAKL 170
           PWPL +PR++L+   P R AL+L  A L
Sbjct: 166 PWPLGIPRLKLLPEAPSRSALKLDEALL 193


>sp|Q8PNZ9|RRMT_XANAC Putative RNA 2'-O-ribose methyltransferase
           XAC0889 OS=Xanthomonas axonopodis pv. citri GN=XAC0889
           PE=3 SV=1
          Length = 347

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 87  PWPLYLPRVRLIAPRPYRPALRLSCAKL 170
           PWPL +PR++L+   P R AL+L  A L
Sbjct: 166 PWPLGIPRLKLLPEAPSRSALKLDEALL 193


>sp|O84418|PMPB_CHLTR Probable outer membrane protein pmpB
           OS=Chlamydia trachomatis GN=pmpB PE=2 SV=2
          Length = 1754

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -3

Query: 357 FTGAPSSAFPEDSSLNASATAWVTIKLHSFRDSTATSPDDKHEGIVASLKASILAFEHKG 178
           FT  P++     ++ N+S++   T  +    DST T+PD K  G   +  + +L+F  + 
Sbjct: 66  FTNIPTTDTTTPTNSNSSSSNGETASVSEDSDSTTTTPDPKGGGAFYNAHSGVLSFMTRS 125

Query: 177 CSE 169
            +E
Sbjct: 126 GTE 128


>sp|P04087|INHA_PIG Inhibin alpha chain OS=Sus scrofa GN=INHA PE=1
           SV=2
          Length = 364

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = +3

Query: 87  PWPLYLPRVRLIAPRPYRPALRLSCAKLRCNPYAQRL---RWTL*GKLLCLHACH 242
           PWP     +RL+   P  PA+   C +   N   Q L   RW +       H CH
Sbjct: 236 PWPWSPAALRLLQRPPEEPAVHADCHRASLNISFQELGWDRWIVHPPSFIFHYCH 290
tr_hit_id B0DQH2
Definition tr|B0DQH2|B0DQH2_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 76
Score (bit) 35.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947365|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_K14, 5'
         (575 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0DQH2|B0DQH2_LACBS Predicted protein OS=Laccaria bicolor (st...    35   2.9  
tr|A8NGA9|A8NGA9_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.9  
tr|B1G5G9|B1G5G9_9BURK Putative non-ribosomal peptide synthetase...    33   8.6  
tr|B0D650|B0D650_LACBS Predicted protein OS=Laccaria bicolor (st...    33   8.6  

>tr|B0DQH2|B0DQH2_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_295321 PE=4 SV=1
          Length = 512

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 27/76 (35%), Positives = 36/76 (47%)
 Frame = -3

Query: 471 HLPFFRK*RFLTSLFLRNSARFAFFFKRSDSSCNLDNSFTGAPSSAFPEDSSLNASATAW 292
           HLP     R + SL + +  R+   F R+DSS    NSF    SS+    S+  AS TA 
Sbjct: 34  HLP-----RQVVSLNITSGTRYTTNFYRADSSSAPSNSFLELSSSSLTPSSTSEASNTAS 88

Query: 291 VTIKLHSFRDSTATSP 244
            T +L +   ST   P
Sbjct: 89  STFQLLTDTVSTTQIP 104


>tr|A8NGA9|A8NGA9_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_05092 PE=4
           SV=1
          Length = 333

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 363 NSFTGAPSSAFPEDSSLNASATAWVTIKLHSFRDSTATSPDDKHEGIVASLKA 205
           + FTG+ S       S   SAT  V I L  +RD T T P D ++G+   +++
Sbjct: 248 SQFTGSASQHSYIPGSGTRSATGGVNIALRKYRDPTYTGPSDVYDGVKVQVRS 300


>tr|B1G5G9|B1G5G9_9BURK Putative non-ribosomal peptide synthetase
           OS=Burkholderia graminis C4D1M GN=BgramDRAFT_4606 PE=4
           SV=1
          Length = 478

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 29/116 (25%), Positives = 47/116 (40%)
 Frame = -3

Query: 423 RNSARFAFFFKRSDSSCNLDNSFTGAPSSAFPEDSSLNASATAWVTIKLHSFRDSTATSP 244
           R  A + F+   S + CNL  +    P  AF    +  A+   W+   L   R      P
Sbjct: 239 RQHAYWQFYLPTSTAKCNLLYALARRPDRAFGLIGAAFAAEAEWLAFGLALERACAHLQP 298

Query: 243 DDKHEGIVASLKASILAFEHKGCSEAWRRTDEGLGDTDGER*AEHEGGIVATATLA 76
             ++     +LK+++     + C+ A RR  +  G       A++  GIVA   LA
Sbjct: 299 AGRNHTDAEALKSAL----EQRCARALRRVADNFG---AAARAQYVQGIVAGERLA 347


>tr|B0D650|B0D650_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_318163 PE=4 SV=1
          Length = 568

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 30  TKIRRTTPTCTFSSPWRA*PWPLYLPRVRLIAPRPYRPALRLSCAKLRCNPYAQ-RLRWT 206
           T  R +T TC     W   P+PL LP   ++ P   RP   LSCA  + + +   ++ WT
Sbjct: 495 TSSRISTNTCDNRQSW---PYPLQLPTHLILCPLTIRPFEILSCAPHQLDQHIPGKVFWT 551

Query: 207 L*GKLLCLHACHLDS*LC 260
                LCL +  + S  C
Sbjct: 552 -----LCLFSFFMRSDRC 564