DK947384 |
Clone id |
YMU02A01NGRL0015_L14 |
Library |
YMU02 |
Length |
575 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_L14. 5' end sequence. |
Accession |
DK947384 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL708Contig1 |
Sequence |
CCCTGCATCTTGTGCACCAGTAAAGTTCGTGGCTATGGCGGCAACTCTCTCGTCTTCTTC CATGTCTGTCTCAGTACCATCGAGGAGTTCATTCCTGGGAAGTAAAGATCAGTTTTGCTG CTCTCCTTCCATCTCCGTATCTTCCAGTAAGGTATCCGTCCCGGTCATCAGAGCCACATC ACGAGTTGACAAATTCTCAAAGTCTGACATTATCGTCTCCCCCTCTATCTTGTCTGCAAA TTTTTCCAAATTGGGAGAGCAGGTCAAGGCAGTGGATGAAGCAGGATGTGACTGGATTCA TGTAGATGTGATGGACGGTAGGTTTGTACCAAACATCACAATTGGACCACTGGTGGTAGA TGCATTAAGGCCTGTCACTGACTTACCTCTTGATGTGCGTCTGATGATTGTTGAGCCTGA ACAAAGAGTGCCGGACTTTGTGAAAGCTGGTGCGGATATTGTTAGTGTGCATTGTGAACA GTCTTCCACGATCCATTTGCATAGGACTTTAAATCAGATCAAGAGTTTGGGTGCTAAAGC TGGAGTAGTGCTAAAACCTGGTACCCCATTGACTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q43843 |
Definition |
sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum |
Align length |
134 |
Score (bit) |
254.0 |
E-value |
3.0e-67 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947384|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_L14, 5' (575 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplasti... 254 3e-67 sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplasti... 253 4e-67 sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplasti... 250 3e-66 sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocys... 185 2e-46 sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus s... 157 4e-38 sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal... 129 1e-29 sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=... 125 1e-28 sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex ae... 121 3e-27 sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacte... 118 2e-26 sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera a... 118 2e-26 sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera a... 117 3e-26 sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia m... 115 2e-25 sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacter... 114 3e-25 sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacter... 114 3e-25 sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella f... 113 8e-25 sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichi... 113 8e-25 sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichi... 113 8e-25 sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichi... 113 8e-25 sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema ... 112 2e-24 sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyc... 111 2e-24 sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilu... 108 2e-23 sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospiri... 107 3e-23 sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacter... 107 6e-23 sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia ... 105 2e-22 sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia ... 104 4e-22 sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia ... 103 5e-22 sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomy... 97 8e-20 sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobact... 97 8e-20 sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera a... 97 8e-20 sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic... 96 1e-19
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1 Length = 280
Score = 254 bits (648), Expect = 3e-67 Identities = 123/134 (91%), Positives = 132/134 (98%) Frame = +2
Query: 173 ATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPL 352 A+SRVDKFSKSDIIVSPSILSANFSKLGEQVKA+++AGCDWIHVDVMDGRFVPNITIGPL Sbjct: 45 ASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPL 104
Query: 353 VVDALRPVTDLPLDVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLG 532 VVD+LRP+TDLPLDV LMIVEP+QRVPDF+KAGADIVSVHCEQSSTIHLHRT+NQIKSLG Sbjct: 105 VVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLG 164
Query: 533 AKAGVVLKPGTPLT 574 AKAGVVL PGTPLT Sbjct: 165 AKAGVVLNPGTPLT 178
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2 Length = 274
Score = 253 bits (647), Expect = 4e-67 Identities = 126/135 (93%), Positives = 131/135 (97%) Frame = +2
Query: 170 RATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGP 349 RA+SRVDKFSK+DIIVSPSILSANFSKLGEQVKAV+ AGCDWIHVDVMDGRFVPNITIGP Sbjct: 38 RASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGP 97
Query: 350 LVVDALRPVTDLPLDVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSL 529 LVVDALRPVTDLPLDV LMIVEPEQRVPDF+KAGADIVSVHCEQSSTIHLHRT+NQIKSL Sbjct: 98 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSL 157
Query: 530 GAKAGVVLKPGTPLT 574 GAKAGVVL P TPLT Sbjct: 158 GAKAGVVLNPATPLT 172
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1 Length = 285
Score = 250 bits (639), Expect = 3e-66 Identities = 124/135 (91%), Positives = 131/135 (97%) Frame = +2
Query: 170 RATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGP 349 +ATSRVDKFSKSDIIVSPSILSANF+KLGEQVKAV+ AGCDWIHVDVMDGRFVPNITIGP Sbjct: 49 KATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP 108
Query: 350 LVVDALRPVTDLPLDVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSL 529 LVVDALRPVTDLPLDV LMIVEPEQRVPDF+KAGADIVSVHCE +STIHLHRT+NQIKSL Sbjct: 109 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSL 168
Query: 530 GAKAGVVLKPGTPLT 574 GAKAGVVL PGTPL+ Sbjct: 169 GAKAGVVLNPGTPLS 183
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3 Length = 230
Score = 185 bits (469), Expect = 2e-46 Identities = 89/122 (72%), Positives = 105/122 (86%) Frame = +2
Query: 206 DIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 385 +I+V+PSILSA+FS+LGE++KAVDEAG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T Sbjct: 4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 63
Query: 386 PLDVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLKPGT 565 LDV LMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI+ LG KAG VL P T Sbjct: 64 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 123
Query: 566 PL 571 PL Sbjct: 124 PL 125
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1 Length = 217
Score = 157 bits (397), Expect = 4e-38 Identities = 78/121 (64%), Positives = 96/121 (79%) Frame = +2
Query: 209 IIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 388 I V+PSILSA+F+ LG ++K V++ G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLP Sbjct: 2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLP 61
Query: 389 LDVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLKPGTP 568 LDV LMI EP++ +P F KAGADI+SVH E + HLHRT+ IK G KAGVVL P TP Sbjct: 62 LDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTP 119
Query: 569 L 571 + Sbjct: 120 V 120
>sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1 Length = 241
Score = 129 bits (323), Expect = 1e-29 Identities = 63/125 (50%), Positives = 89/125 (71%) Frame = +2
Query: 197 SKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 376 S+ I ++PSILSA+F++LGE+V A++ G D +H DVMD +VPN+TIGPLV +A+RP+ Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPL 71
Query: 377 TDLPLDVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLK 556 +P+DV LM+ + +P F KAGA+I+S H E S H+ RT+ I+ G KAG+VL Sbjct: 72 VSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 557 PGTPL 571 P TPL Sbjct: 130 PATPL 134
>sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1 Length = 241
Score = 125 bits (315), Expect = 1e-28 Identities = 61/126 (48%), Positives = 89/126 (70%) Frame = +2
Query: 197 SKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 376 S+ I ++PSILSA+F++LGE+V A++ G D +H DVMD +V N+TIGPLV +A+RP+ Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPL 71
Query: 377 TDLPLDVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLK 556 +P+DV LM+ + +P F KAGA+++S H E S H+ RT+ I+ G KAG+VL Sbjct: 72 VSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 557 PGTPLT 574 P TPL+ Sbjct: 130 PATPLS 135
>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1 Length = 222
Score = 121 bits (303), Expect = 3e-27 Identities = 60/121 (49%), Positives = 84/121 (69%) Frame = +2
Query: 212 IVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 391 +++PSIL+ ++ +GEQ++A G D +H DVMDG FVPNIT G ++ +R LP+ Sbjct: 3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPI 62
Query: 392 DVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLKPGTPL 571 D LMI P++ +P FV+AGA+ +SVH E + H+HRTL IK LGAKAGVV+ PGT L Sbjct: 63 DAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSL 120
Query: 572 T 574 + Sbjct: 121 S 121
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2 Length = 228
Score = 118 bits (296), Expect = 2e-26 Identities = 55/120 (45%), Positives = 79/120 (65%) Frame = +2
Query: 209 IIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 388 I ++PSILSA+F+ G +++A++ G DW+HVDVMDG FVPN+T GP V A R Sbjct: 7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTV 66
Query: 389 LDVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLKPGTP 568 +DV LMI + + + +AGAD+++ H E H+HRTL I++ G K+GV + PGTP Sbjct: 67 MDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTP 124
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1 Length = 228
Score = 118 bits (296), Expect = 2e-26 Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 1/120 (0%) Frame = +2
Query: 215 VSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPL 391 ++ SILSA+F++LGE K +AG DWIH DVMD +VPN+T+GP+++ ALR +P+ Sbjct: 6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPI 65
Query: 392 DVRLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLKPGTPL 571 DV LM+ + +P F +AGAD ++ H E ST H+ RTLN IK G KAG+ L P T L Sbjct: 66 DVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSL 123
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q10R77 |
Definition |
tr|Q10R77|Q10R77_ORYSJ Os03g0169100 protein OS=Oryza sativa subsp. japonica |
Align length |
135 |
Score (bit) |
253.0 |
E-value |
4.0e-66 |
Report |
|