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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947397
Clone id YMU02A01NGRL0015_M06
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_M06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTTCTTCGCAATTGTGACTCCGGCAAGCTCTGCGTTCCCTCTCTAGAAGGTTTGCAGCAT
CAAGCTTGGATGTGGTGCTGCTAATGCTAAGCATAGTTTATTTGAGGCAAATGGTGTAGC
CTACTGGTGCTTCTACGATCTCTTGAGTCATGAAATAGTTCTTACGTAAGGTAGAAACAG
GTTTTCTTCATATTTCTCGCATCAATGGCGGAACCCAAAGATGACGAAAGAGATGAGGAA
TGGTTTAAGGAGGTTTATGGAAAAGAGTACACAGGACCCGTTAGGCCTGGCAGTGACAAT
GCTCGGGATAATTTGAGCACCAAGAAAAGGTCAATGACAGAAGCAATTAGCAATGAACCT
GATGAGGACGAGGCCCCTCCGGATCCTAATGCTGTGCCCACTGATTTCACAAGTAGGGAA
GCTAAAGTGTGGGAGGCGAAAGCCAAAGCCATAGAAAGGAATTAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q499Q5
Definition sp|Q499Q5|MKS1_RAT Meckel syndrome type 1 protein homolog OS=Rattus norvegicus
Align length 27
Score (bit) 30.8
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947397|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M06, 5'
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q499Q5|MKS1_RAT Meckel syndrome type 1 protein homolog OS=Rat...    31   3.1  
sp|Q5SW45|MKS1_MOUSE Meckel syndrome type 1 protein homolog OS=M...    31   3.1  
sp|Q63HN8|RN213_HUMAN RING finger protein 213 OS=Homo sapiens GN...    30   5.1  

>sp|Q499Q5|MKS1_RAT Meckel syndrome type 1 protein homolog OS=Rattus
           norvegicus GN=Mks1 PE=2 SV=2
          Length = 561

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 12/27 (44%), Positives = 23/27 (85%), Gaps = 2/27 (7%)
 Frame = +1

Query: 196 LASMAEPKDDERDEEWFKEVYG--KEY 270
           ++S+A+P+++ER++  FK++YG  KEY
Sbjct: 271 VSSLAQPEEEEREQRVFKDLYGRHKEY 297


>sp|Q5SW45|MKS1_MOUSE Meckel syndrome type 1 protein homolog OS=Mus
           musculus GN=Mks1 PE=2 SV=1
          Length = 561

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 12/27 (44%), Positives = 23/27 (85%), Gaps = 2/27 (7%)
 Frame = +1

Query: 196 LASMAEPKDDERDEEWFKEVYG--KEY 270
           ++S+A+P+++ER++  FK++YG  KEY
Sbjct: 271 VSSLAQPEEEEREQRVFKDLYGRHKEY 297


>sp|Q63HN8|RN213_HUMAN RING finger protein 213 OS=Homo sapiens
            GN=RNF213 PE=1 SV=2
          Length = 3280

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/56 (28%), Positives = 33/56 (58%)
 Frame = -3

Query: 178  VSTLRKNYFMTQEIVEAPVGYTICLK*TMLSISSTTSKLDAANLLERERRACRSHN 11
            ++ L+K  F+T++  E  + +  CL+ ++L  +S  S+ D  N LE E R  ++++
Sbjct: 2227 LTLLKKKAFITEDKTELYMLFINCLEDSILEKTSAYSRNDELNHLEEEGRFLKAYS 2282
tr_hit_id A9TLA8
Definition tr|A9TLA8|A9TLA8_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 88
Score (bit) 81.3
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947397|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0015_M06, 5'
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TLA8|A9TLA8_PHYPA Predicted protein (Fragment) OS=Physcomit...    81   2e-14
tr|Q5NBC3|Q5NBC3_ORYSJ cDNA clone:001-114-C08, full insert seque...    73   6e-12
tr|A2ZRC4|A2ZRC4_ORYSJ Putative uncharacterized protein OS=Oryza...    73   6e-12
tr|A2WMY2|A2WMY2_ORYSI Putative uncharacterized protein OS=Oryza...    73   6e-12
tr|B4FCC2|B4FCC2_MAIZE Putative uncharacterized protein OS=Zea m...    71   2e-11
tr|A7Q0Q5|A7Q0Q5_VITVI Chromosome chr7 scaffold_42, whole genome...    70   4e-11
tr|B6TIM5|B6TIM5_MAIZE Putative uncharacterized protein OS=Zea m...    70   7e-11
tr|Q9LZQ7|Q9LZQ7_ARATH Putative uncharacterized protein T12C14_3...    57   6e-07
tr|B7FKP4|B7FKP4_MEDTR Putative uncharacterized protein OS=Medic...    53   7e-06
tr|A8WKH1|A8WKH1_CAEBR Putative uncharacterized protein OS=Caeno...    33   7.2  

>tr|A9TLA8|A9TLA8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_223358 PE=4 SV=1
          Length = 197

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 45/88 (51%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
 Frame = +1

Query: 205 MAEPKDDERDEEWFKEVYGKEYTGPVRP--GSDNARDNLSTKKRSMTEAISXXXXXXXXX 378
           MAE  DD+RDEEWFKEVYG EYT P R    +  A +    K  +               
Sbjct: 1   MAEELDDDRDEEWFKEVYGTEYTAPARATGATRRAVEPAPPKVANKRAPNPSDSEEDEEQ 60

Query: 379 XXXXXVPTDFTSREAKVWEAKAKAIERN 462
                VPTDFTSREAKVWEAKAKA+ERN
Sbjct: 61  RDPTAVPTDFTSREAKVWEAKAKAVERN 88


>tr|Q5NBC3|Q5NBC3_ORYSJ cDNA clone:001-114-C08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0434D08.42 PE=2 SV=1
          Length = 275

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 41/86 (47%), Positives = 49/86 (56%)
 Frame = +1

Query: 205 MAEPKDDERDEEWFKEVYGKEYTGPVRPGSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 384
           MA     E D+E F EVYGK Y+GPV   ++N    ++ +KR +    S           
Sbjct: 1   MAREPSPEIDDELFNEVYGKAYSGPVATTTNNVTPRVNDEKRPLEREKSDEEDGPPDPNA 60

Query: 385 XXXVPTDFTSREAKVWEAKAKAIERN 462
              VPTDFTSREAKVWEAKAKA ERN
Sbjct: 61  ---VPTDFTSREAKVWEAKAKATERN 83


>tr|A2ZRC4|A2ZRC4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001096 PE=4 SV=1
          Length = 385

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 41/86 (47%), Positives = 49/86 (56%)
 Frame = +1

Query: 205 MAEPKDDERDEEWFKEVYGKEYTGPVRPGSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 384
           MA     E D+E F EVYGK Y+GPV   ++N    ++ +KR +    S           
Sbjct: 1   MAREPSPEIDDELFNEVYGKAYSGPVATTTNNVTPRVNDEKRPLEREKSDEEDGPPDPNA 60

Query: 385 XXXVPTDFTSREAKVWEAKAKAIERN 462
              VPTDFTSREAKVWEAKAKA ERN
Sbjct: 61  ---VPTDFTSREAKVWEAKAKATERN 83


>tr|A2WMY2|A2WMY2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01205 PE=4 SV=1
          Length = 106

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 41/86 (47%), Positives = 49/86 (56%)
 Frame = +1

Query: 205 MAEPKDDERDEEWFKEVYGKEYTGPVRPGSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 384
           MA     E D+E F EVYGK Y+GPV   ++N    ++ +KR +    S           
Sbjct: 1   MAREPSPEIDDELFNEVYGKAYSGPVATTTNNVMPRVNDEKRPLEREKSDEEDGPPDPNA 60

Query: 385 XXXVPTDFTSREAKVWEAKAKAIERN 462
              VPTDFTSREAKVWEAKAKA ERN
Sbjct: 61  ---VPTDFTSREAKVWEAKAKATERN 83


>tr|B4FCC2|B4FCC2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 467

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 40/86 (46%), Positives = 49/86 (56%)
 Frame = +1

Query: 205 MAEPKDDERDEEWFKEVYGKEYTGPVRPGSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 384
           MA     E D+E + EVYGK Y+GPV   +++     + +KR +T   S           
Sbjct: 1   MAREPSPEIDDELYNEVYGKAYSGPVASATNSVTPKGNAEKRPLTRDKSDDEDEAPDPNA 60

Query: 385 XXXVPTDFTSREAKVWEAKAKAIERN 462
              VPTDFTSREAKVWEAKAKA ERN
Sbjct: 61  ---VPTDFTSREAKVWEAKAKATERN 83


>tr|A7Q0Q5|A7Q0Q5_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028140001
           PE=4 SV=1
          Length = 464

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 42/89 (47%), Positives = 49/89 (55%)
 Frame = +1

Query: 196 LASMAEPKDDERDEEWFKEVYGKEYTGPVRPGSDNARDNLSTKKRSMTEAISXXXXXXXX 375
           +A   EP DD+     F E+Y KEYTGP R  + N +D   T KRS   +          
Sbjct: 1   MAKRPEPDDDD-----FSEIY-KEYTGPPRSTTSNVQDKAKTSKRSHASS-----DEEEE 49

Query: 376 XXXXXXVPTDFTSREAKVWEAKAKAIERN 462
                 VPTDFTSREAKVWEAK+KA ERN
Sbjct: 50  PRDPNAVPTDFTSREAKVWEAKSKATERN 78


>tr|B6TIM5|B6TIM5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 467

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 39/86 (45%), Positives = 49/86 (56%)
 Frame = +1

Query: 205 MAEPKDDERDEEWFKEVYGKEYTGPVRPGSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 384
           MA     E D+E + EVYGK Y+GPV   +++     + +KR +T   S           
Sbjct: 1   MAREPSPEIDDELYNEVYGKAYSGPVASATNSVTPKGNAEKRPLTRDKSDDEDEAPDPNA 60

Query: 385 XXXVPTDFTSREAKVWEAKAKAIERN 462
              VPTDFTSREAKVWEAKAKA +RN
Sbjct: 61  ---VPTDFTSREAKVWEAKAKATKRN 83


>tr|Q9LZQ7|Q9LZQ7_ARATH Putative uncharacterized protein T12C14_30
           (At3g62330) OS=Arabidopsis thaliana GN=T12C14_30 PE=2
           SV=1
          Length = 479

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +1

Query: 220 DDERDEEWFKEVYGKEYTGPVRPGSDNARDNLSTKKRSMTE-AISXXXXXXXXXXXXXXV 396
           D E D++ F E+Y KEYTGP    ++N   N+  K + + + +                V
Sbjct: 7   DPELDDD-FSEIY-KEYTGPASAVTNN---NIQDKDKPVKQRSEERCDEEEEQLPDPNSV 61

Query: 397 PTDFTSREAKVWEAKAKAIERN 462
           PTDFTSREAKVWEAK+KA ERN
Sbjct: 62  PTDFTSREAKVWEAKSKATERN 83


>tr|B7FKP4|B7FKP4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 361

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 34/86 (39%), Positives = 48/86 (55%)
 Frame = +1

Query: 205 MAEPKDDERDEEWFKEVYGKEYTGPVRPGSDNARDNLSTKKRSMTEAISXXXXXXXXXXX 384
           MA   D + D++ F+++Y KEYTGP   GS + ++   + KRS     +           
Sbjct: 1   MANIPDPDIDDD-FRDLY-KEYTGPA--GSGSVQERAKSNKRS-----NAGSDEEDEVRD 51

Query: 385 XXXVPTDFTSREAKVWEAKAKAIERN 462
              +PT F SR+AKVWEAK+KA ERN
Sbjct: 52  PNAIPTGFISRDAKVWEAKSKATERN 77


>tr|A8WKH1|A8WKH1_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG24330 PE=4 SV=2
          Length = 328

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = -1

Query: 390 IRIRRGLVLIRFIANCFCH*PFLGA--QIIPSIVTARPNGSCVLFSINLLKPFLISFVIF 217
           IRI  G V +R IAN FC    LG+  ++ PS V   P     LF++  L   +ISF +F
Sbjct: 109 IRICFGFVFLRNIANRFCLMFRLGSATRLSPSCVRFIP-----LFAVIFL--LVISFTVF 161

Query: 216 GFRH*CEKYEENLFLPYV 163
                 EKY+E    PYV
Sbjct: 162 KSSG-IEKYQERTNAPYV 178