DK947398 |
Clone id |
YMU02A01NGRL0015_M08 |
Library |
YMU02 |
Length |
639 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0015_M08. 5' end sequence. |
Accession |
DK947398 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL24Contig2 |
Sequence |
ACTGTTCTAGCGTAACATATGACTTTCTATCTCCCCCTACACTGACGGTCTTTCTCCTTC TCCCGTGTAGTCTGTGAACCTGAAAAGAGCAATGGCGTCCTTGACCACAGCTTCTGCTCT CTCAGCAGCGAAGGTTGCTCCCGCCTCCCTTTCATGGAAGCAAACAGGAGCCGCGGGGCA GCAAGTGAAGATTCCGCAGCAGGCAGCGATGGCCAGCTCGGGGAGGGTTGTTATGTCAAC GGCCAAATCTTTTGAAGCTTGCGAGGAAGGAGCAGTGCCTTGCCCTTGGCACCAAGCTGC GTTCCAAGTTTAAAATTAATTACCAGTTCTACCGAGTGTTTCCTAATGGCGAGGTGCAGT ACCTTCATCCCAAGGACGGAGTATACCCCGAGAAAGTGAACCCCGGCCGCAAGGGTGTTG GCGTGAACTTGCGCTCTATTGGAGAGAATGTAAACCCCGCCACAGTCAAGTTCACTGGCA AGAACGCTTACGATTTGTGAGGAGCATGTTGCTGACCCCTTTATGATTCTTTCTGTAAGT GGTCTGTGGCAAGCTCATGTCTTCTATCTTTCATGATTGTAAAGTTTTTCTGTAATAGAC TACTTCTTTCCTACAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SA56 |
Definition |
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana |
Align length |
90 |
Score (bit) |
157.0 |
E-value |
3.0e-38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK947398|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0015_M08, 5' (614 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 157 3e-38 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 157 3e-38 sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 157 5e-38 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 156 7e-38 sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 154 3e-37 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 151 2e-36 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 149 1e-35 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 121 2e-27 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 120 4e-27 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 120 6e-27 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 120 7e-27 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 119 9e-27 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 116 1e-25 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 115 2e-25 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 114 5e-25 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 113 7e-25 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 107 6e-23 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 106 8e-23 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 105 1e-22 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 102 1e-21 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 100 8e-21 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 100 8e-21 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 100 8e-21 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 100 1e-20 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 94 4e-19 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 89 1e-17 sp|Q5HW65|GLYA_CAMJR Serine hydroxymethyltransferase OS=Campylob... 33 1.5 sp|A1VYC2|GLYA_CAMJJ Serine hydroxymethyltransferase OS=Campylob... 33 1.5 sp|P24531|GLYA_CAMJE Serine hydroxymethyltransferase OS=Campylob... 33 1.5 sp|A7H4X6|GLYA_CAMJD Serine hydroxymethyltransferase OS=Campylob... 33 1.5
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 157 bits (398), Expect = 3e-38 Identities = 72/90 (80%), Positives = 83/90 (92%) Frame = +3
Query: 228 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 407 ++ + PNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPG Sbjct: 115 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 174
Query: 408 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 497 R+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 175 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 157 bits (398), Expect = 3e-38 Identities = 72/90 (80%), Positives = 83/90 (92%) Frame = +3
Query: 228 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 407 ++ + PNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPG Sbjct: 119 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 178
Query: 408 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 497 R+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 179 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 157 bits (396), Expect = 5e-38 Identities = 73/90 (81%), Positives = 81/90 (90%) Frame = +3
Query: 228 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 407 ++ + PNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG Sbjct: 118 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 177
Query: 408 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 497 R+GVG N RSIG+NV+P VKFTGK YDL Sbjct: 178 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 156 bits (395), Expect = 7e-38 Identities = 72/90 (80%), Positives = 83/90 (92%) Frame = +3
Query: 228 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 407 ++ + PNLLKLARKEQCLALGT+LRSK+KI YQFYRVFP+GEVQYLHPKDGVYPEKVNPG Sbjct: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPG 182
Query: 408 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 497 R+GVG+N+RSIG+NV+P VKFTGK YDL Sbjct: 183 RQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 154 bits (389), Expect = 3e-37 Identities = 72/90 (80%), Positives = 80/90 (88%) Frame = +3
Query: 228 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 407 ++ Q PNLLKLARKEQCLALGT+LRSK+KINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG Sbjct: 119 IMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 178
Query: 408 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 497 R+GVG N RSIG+N + VKFTGK YD+ Sbjct: 179 REGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 151 bits (382), Expect = 2e-36 Identities = 70/90 (77%), Positives = 81/90 (90%) Frame = +3
Query: 228 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 407 ++ + PNLLKLARKEQCLALG +LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVN G Sbjct: 116 IMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAG 175
Query: 408 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 497 R+GVG N RSIG+NV+P VKFTGKN++D+ Sbjct: 176 RQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 149 bits (376), Expect = 1e-35 Identities = 70/84 (83%), Positives = 76/84 (90%) Frame = +3
Query: 246 NLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGV 425 NLLKLARKEQCLALGT+LRSK+KINY+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVG Sbjct: 121 NLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQ 180
Query: 426 NLRSIGENVNPATVKFTGKNAYDL 497 N RSIG+N +P VKFTGK YDL Sbjct: 181 NFRSIGKNKSPIEVKFTGKQVYDL 204
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 121 bits (304), Expect = 2e-27 Identities = 60/96 (62%), Positives = 76/96 (79%), Gaps = 2/96 (2%) Frame = +3
Query: 213 PARGGLLCQR-PNLLKLARKEQCLALGTKLRSKFKI-NYQFYRVFPNGEVQYLHPKDGVY 386 P G + ++ NLL LARKEQCLALGT++++ FKI +Y+ YR+FP+GEVQYLHPKDGV+ Sbjct: 46 PTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVF 105
Query: 387 PEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYD 494 PEKVNPGR GVG SIG+N+NPA +KFT K+ D Sbjct: 106 PEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1 Length = 196
Score = 120 bits (302), Expect = 4e-27 Identities = 56/85 (65%), Positives = 68/85 (80%) Frame = +3
Query: 228 LLCQRPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 407 ++ Q PNLLK +KEQCLAL T+LR+KFK+ FYRVFP+G+VQYLHP DGVYPEKVN G Sbjct: 105 IMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAG 164
Query: 408 RKGVGVNLRSIGENVNPATVKFTGK 482 R G N+R IG+NVNP VKF+G+ Sbjct: 165 RVGANQNMRRIGQNVNPIKVKFSGR 189
>sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1 Length = 141
Score = 120 bits (301), Expect = 6e-27 Identities = 59/84 (70%), Positives = 67/84 (79%), Gaps = 1/84 (1%) Frame = +3
Query: 246 NLLKLARKEQCLALGTKLRSKFKIN-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVG 422 NLL LA+KEQCLALGT+L+ KFKI+ Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR + Sbjct: 58 NLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASIN 117
Query: 423 VNLRSIGENVNPATVKFTGKNAYD 494 SIG+NVNP VKFT K YD Sbjct: 118 SVDHSIGKNVNPINVKFTNKATYD 141
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5AEB4 |
Definition |
tr|A5AEB4|A5AEB4_VITVI Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgun sequence) OS=Vitis vinifera |
Align length |
90 |
Score (bit) |
164.0 |
E-value |
5.0e-39 |
Report |
|